GENSCAN 1.0	Date run:  4-Nov-116	Time: 13:39:59

Sequence gi568815596r:237475022_237686102 : 211081 bp : 49.66% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   2768   2897  130  1  1   97   63    52 0.620   3.87
 1.02 Intr +   6057   6218  162  1  0   85   -7   107 0.439   0.85
 1.03 Intr +   8219   8356  138  0  0   75   77    42 0.667   2.24
 1.04 Intr +  11246  11288   43  0  1   89   82    56 0.829   2.40
 1.05 Intr +  11660  11804  145  2  1   74   50    56 0.495   0.68
 1.06 Intr +  12377  12416   40  1  1  141  117     8 0.624   6.80
 1.07 Intr +  22546  22723  178  2  1   61   27   160 0.176   6.18
 1.08 Intr +  26086  26102   17  1  2  122   81     9 0.020  -1.21
 1.09 Intr +  28768  28789   22  2  1  110   91    29 0.000   2.00
 1.10 Intr +  35553  35774  222  0  0   48   99   237 0.006  18.04
 1.11 Intr +  35968  36080  113  1  2   87   94   184 0.996  18.92
 1.12 Term +  37174  37313  140  2  2   70   41    72 0.642  -1.17
 1.13 PlyA +  38828  38833    6                               1.05

 2.03 PlyA -  39244  39239    6                               1.05
 2.02 Term -  40317  40088  230  1  2   46   39   180 0.561   5.69
 2.01 Init -  40940  40874   67  2  1   36   73    98 0.958   2.36
 2.00 Prom -  41648  41609   40                               1.34

 3.00 Prom +  42448  42487   40                             -14.38
 3.01 Init +  43499  43627  129  1  0   84  106   141 0.984  15.65
 3.02 Intr +  44889  45008  120  2  0   49   82   123 0.823   8.49
 3.03 Intr +  45047  45076   30  1  0   97   94    10 0.385   0.83
 3.04 Intr +  48282  48306   25  2  1   50   91   -10 0.201  -6.90
 3.05 Intr +  50590  50784  195  2  0   78   86    79 0.580   6.09
 3.06 Intr +  52356  52495  140  1  2   32   97   146 0.943  10.08
 3.07 Intr +  59543  59626   84  1  0  117   87    92 0.997  12.02
 3.08 Intr +  62805  62970  166  2  1   69   55    87 0.942   3.03
 3.09 Intr +  64620  64693   74  1  2  128   47    34 0.876   2.43
 3.10 Intr +  65327  65512  186  1  0   24   94   285 0.927  22.59
 3.11 Intr +  65781  65936  156  2  0  127   53   174 0.999  18.01
 3.12 Intr +  67546  67638   93  0  0  131  117    73 0.997  14.66
 3.13 Intr +  71585  71662   78  1  0  108   95    36 0.805   6.05
 3.14 Intr +  74200  74257   58  0  1   81  116    20 0.956   2.56
 3.15 Term +  77316  77440  125  1  2   97   55   128 0.758   8.95
 3.16 PlyA +  80270  80275    6                               1.05

 4.03 PlyA -  81034  81029    6                               1.05
 4.02 Term -  82650  82518  133  2  1   92   48    91 0.758   3.06
 4.01 Init -  84345  84266   80  0  2   78   69   115 0.683   7.13
 4.00 Prom -  88045  88006   40                              -5.06

 5.00 Prom +  88691  88730   40                              -5.16
 5.01 Init +  91553  91652  100  1  1   55   73   291 0.941  22.72
 5.02 Term +  91991  92154  164  0  2   94   48   157 0.967  10.40
 5.03 PlyA +  92238  92243    6                               1.05

 6.09 PlyA -  92599  92594    6                               1.05
 6.08 Term - 100107  99998  110  1  2  109   43    84 0.963   4.67
 6.07 Intr - 100610 100366  245  1  2   45   92   269 0.900  20.14
 6.06 Intr - 100887 100841   47  0  2   73   94    34 0.916  -0.29
 6.05 Intr - 102361 102236  126  1  0  134   86   200 0.980  25.28
 6.04 Intr - 103134 102983  152  1  2  113   97   194 0.990  22.68
 6.03 Intr - 111136 110977  160  1  1   85   87    64 0.191   5.56
 6.02 Intr - 116463 116389   75  0  0   91   96    53 0.739   6.11
 6.01 Init - 120470 120384   87  2  0   68   96    43 0.176   2.03
 6.00 Prom - 128082 128043   40                              -4.36

 7.00 Prom + 129245 129284   40                              -7.06
 7.01 Init + 131269 131578  310  0  1   67   79   120 0.625   6.48
 7.02 Intr + 136427 136559  133  0  1   91   87    24 0.194   2.30
 7.03 Intr + 138158 138232   75  2  0   94  107    20 0.403   3.13
 7.04 Intr + 152189 152336  148  2  1  100   19   116 0.364   6.14
 7.05 Intr + 152606 152719  114  1  0    2   83   197 0.199  11.24
 7.06 Intr + 164821 164963  143  0  2   69    7    78 0.134  -3.05
 7.07 Intr + 165417 165573  157  0  1   89   86   107 0.152  10.61
 7.08 Term + 169690 169752   63  0  0  117   49    24 0.064  -0.71
 7.09 PlyA + 171201 171206    6                              -0.45

 8.05 PlyA - 171245 171240    6                               1.05
 8.04 Term - 172759 172738   22  0  1  111   48    15 0.031  -2.42
 8.03 Intr - 173225 172969  257  2  2   68  108    49 0.532   1.14
 8.02 Intr - 177121 176865  257  2  2   84   22   192 0.257   9.36
 8.01 Init - 189430 189358   73  1  1   81   72    32 0.334   2.22
 8.00 Prom - 189644 189605   40                              -4.66

 9.00 Prom + 189723 189762   40                              -2.66
 9.01 Init + 195153 195237   85  2  1   61   74    50 0.071   1.90
 9.02 Term + 208126 208274  149  2  2   66   50   166 0.325   8.66
 9.03 PlyA + 210781 210786    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  18406  18515  110  0  2   90   70   160 0.979  14.09
S.002 Init -  32787  32595  193  0  1   66   85   160 0.844  12.63
S.003 Init +  35515  35774  260  0  2   75   99   217 0.953  18.11


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:237475022_237686102|GENSCAN_predicted_peptide_1|449_aa
FPEQLEKLALIPGPATEFSHALSVTQTCQPSKSLPKWIAAVFPTWAHEGGSGFEFLHLLF
TAFLLLAVPGPMNQSPLLWLLPAPGAVEIQAQSPLDLGSLSTCREEAKPKATPQWDLPDQ
LSLELGYAQAVKLKGASLKPIFGDRKTELQKRFLENRIRAARGCGTLLVLMPGRIEGVRV
RSLQQKALGLKSYLLFGVATYWSVALVLDQGLSVPRRGSGGVDAVQGHRGNKHRKKALVL
GTKIGSAEELAKIPEIHDETEDNSYNNEPPSLSFIIANLASPMPSCGDAYRWALKGKIKK
ESSKRELLSDTAHLNETHCARCLQPYQLLVNSKRQCLECGLFTCKSCGRVHPEEQGWICD
PCHLARVVKIGSLEWYYEHVKARFKRFGSAKVIRSLHGRLQGGGLPSGETPYSCLSLKAS
SLIEEAEVGIDTFEHSSSRRACCRHFKAS

>gi568815596r:237475022_237686102|GENSCAN_predicted_CDS_1|1350_bp
ttccctgaacaactagagaagcttgcattaatacctggacctgctacagaattttctcac
gctctaagcgtcactcaaacctgccagccttccaaatcacttcccaaatggattgcagca
gtattcccaacatgggcccatgaggggggctctggttttgaatttctacatctgctcttc
acagctttcctgcttctggctgtgccaggccccatgaaccagtcacccctgctgtggctg
ttgcctgccccaggcgctgtggaaatccaggctcagagccccttagacctgggttcccta
tccacgtgcagagaggaggctaagcccaaggccacccctcagtgggacttgcctgaccag
ttatccttggaactggggtatgcccaggcagtgaaattaaagggtgcttctctgaagccc
atctttggtgataggaaaactgaattgcaaaagcggttcctggagaacagaatcagggct
gcccgcggctgcgggaccctcctggtcctgatgcctggcagaatcgaaggggtgagggta
cgctctctgcagcagaaagccctgggcttaaagtcctatttattatttggcgttgccact
tactggtcggtggctttggtgctggaccagggactgagcgtcccccggagagggtccggt
ggtgtggacgctgtgcaaggccacagaggaaacaagcatagaaaaaaggctctggttctt
ggcaccaaaattggttctgcagaggagctggcgaaaataccagaaatccatgatgaaacg
gaagataactcttacaataatgaacctccttccctgtctttcatcattgctaatctcgct
tctccaatgcccagctgtggggatgcttaccggtgggcgttgaagggcaagattaagaag
gaaagctccaagagggagctgctttccgacactgcccatctgaacgagacccactgcgcc
cgctgcctgcagccctaccagctgcttgtgaatagcaaaaggcagtgcctggaatgtggc
ctcttcacctgcaaaagctgtggccgcgtccacccggaggagcagggctggatctgtgac
ccctgccatctggccagagtcgtgaagatcggctcactggagtggtactatgagcatgtg
aaagcccgcttcaagaggttcggaagtgccaaggtcatccggtccctccacgggcggctg
cagggtggaggccttccttctggagagacaccttattcgtgcctgtctcttaaagcctca
agtttgattgaagaagcagaagttggcatagacacctttgagcattcaagctctcgccgg
gcctgctgcaggcatttcaaggcatcttag

>gi568815596r:237475022_237686102|GENSCAN_predicted_peptide_2|98_aa
MWELALHTTPLPCLLLCEGSARRQPRTRHLASIRRMYSINHRRIFQSLLRDGDLTVHLLS
SAPECRTPSSVMSTPAYNSTIDWALGSSGFSGSVLSQQ

>gi568815596r:237475022_237686102|GENSCAN_predicted_CDS_2|297_bp
atgtgggagctggccctgcacaccacacctctgccttgcctgctcctctgtgagggctcg
gctcgcagacagcccaggacccggcacctggcgagcattcggcggatgtactcaatcaat
caccgacgcatcttccaaagcctcctgcgagatggagacctcactgtgcacctcctttca
tccgcccccgagtgccgtacaccctcctccgtgatgtccacaccagcttacaattctacc
atcgactgggccttgggaagctctgggttctcaggctctgtcctgagccagcagtga

>gi568815596r:237475022_237686102|GENSCAN_predicted_peptide_3|552_aa
MQVSIAAGPELISEERSGDSDQTDEDGEPGSEAQAQAQPFGSKKKRLLSVHDFDFEGDSD
DSTQPQGHSLHLSSVPEARDSPQEPEWQVLRPQGLAKVTVIDESCSEKAAPHKAEGLEEA
DTGASGCHSHPEEQPTSISPSRHGALAELCPPGGSHRMALGTAAALGSNVIRNEQLPLQY
LADVDTSDEESIRAHVMASHHSKRRGRASSESQIFELNKHISAVECLLTYLENTVVPPLA
KPSSVSGGDGSQRKGPRTALKFPRWHLCAALASHFKVDFMGPGESPRNVGWMSERADKVA
SGTRPFKDFTEIIELSSYNLQGLGAGVRTEADVEEEALRRKLEELTSNVSDQETSSEEEE
AKDEKAEPNRDKSVGPLPQADPEVGTAAHQTNRQEKSPQDPGDPVQYNRTTDEELSELED
RVAVTASEVQQAESEVSDIESRIAALRAAGLTVKPSGKPRRKSNLPIFLPRVAGKLGKRP
EDPNADPSSEAKAMAVPYLLRRKFSNSLKSQGKDDDSFDRKSVYRGSLTQRNPNARKGMA
SHTFAVKFSLIL

>gi568815596r:237475022_237686102|GENSCAN_predicted_CDS_3|1659_bp
atgcaggtatctattgcagctgggcctgaactgatatctgaagagagaagtggagacagc
gaccagacagatgaggatggagaacctggctcagaggcccaggcccaggcccagcccttt
ggcagcaaaaaaaagcgcctcctctccgtccacgacttcgacttcgagggagactcagat
gactccactcagcctcaaggtcactccctgcacctgtcctcagtccctgaggccagggac
agcccacaggaacctgagtggcaggtgctcaggccccaggggttggctaaggtaacagta
attgatgagtcctgctcagagaaggcagcccctcacaaggctgagggcctggaggaggct
gatactggggcctctgggtgccactcccatccggaagagcagccgaccagcatctcacct
tccagacacggcgccctggctgagctctgcccgcctggaggctcccacaggatggccctg
gggactgctgctgcactcgggtcgaatgtcatcaggaatgagcagctgcccctgcagtac
ttggccgatgtggacacctctgatgaggaaagcatccgggctcacgtgatggcctcccac
cattccaagcggagaggccgggcgtcttctgagagtcagatctttgagctgaataagcat
atttcagctgtggaatgcctgctgacctacctggagaacacagttgtgcctcccttggcc
aagccctccagtgtcagtggaggtgatggctcccagaggaagggaccaaggacggcacta
aagttccccaggtggcatctctgcgcggccctcgcctcacacttcaaagtcgacttcatg
gggccaggggagagccctcggaatgtgggatggatgagtgaacgagcagacaaggtggcc
agtggaactagaccctttaaggactttacagagattattgaactgagttcttataacttg
cagggtctaggtgctggagtgcgcacggaggccgatgtagaggaggaggccctgaggagg
aagctggaggagctgaccagcaacgtcagtgaccaggagacctcgtccgaggaggaggaa
gccaaggacgaaaaggcagagcccaacagggacaaatcagttgggcctctcccccaggcg
gacccggaggtgggcacggctgcccatcaaaccaacagacaggaaaaaagcccccaggac
cctggggaccccgtccagtacaacaggaccacagatgaggagctgtcagagctggaggac
agagtggcagtgacggcctcagaagtccagcaggcagagagcgaggtttcagacattgaa
tccaggattgcagccctgagggccgcagggctcacggtgaagccctcgggaaagccccgg
aggaagtcaaacctcccgatatttctccctcgagtggctgggaaacttggcaagagacca
gaggacccaaatgcagacccttcaagtgaggccaaggcaatggctgtgccctatcttctg
agaagaaagttcagtaattccctgaaaagtcaaggtaaagatgatgattcttttgatcgg
aaatcagtgtaccgaggctcgctgacacagagaaaccccaacgcgaggaaaggaatggcc
agccacaccttcgcggtaaagttttctctcattctctga

>gi568815596r:237475022_237686102|GENSCAN_predicted_peptide_4|70_aa
MGRSWLWPSLPFAALGLGLQLANCCNRKTLHSLMGEVTLGIGSHRVAAVEQPRQEQYSVT
RKAVSAVDGF

>gi568815596r:237475022_237686102|GENSCAN_predicted_CDS_4|213_bp
atgggccgcagctggctttggcccagcctgccgtttgctgccctgggtctaggtctccag
ctggcaaactgttgcaacaggaagacactacacagcctgatgggagaggtaaccttggga
attggaagccatcgagttgcagctgtggaacagccacggcaagagcaatattcagtcacc
agaaaagctgtttctgctgtagatggcttctga

>gi568815596r:237475022_237686102|GENSCAN_predicted_peptide_5|87_aa
MKVLRAWLLCLLMLGLALRGAASRTHRHSMEIRTPDINPAWYASRGIRPVGRFGRRRATL
GDVPKPGLRPRLTCFPLEGGAMSSQDG

>gi568815596r:237475022_237686102|GENSCAN_predicted_CDS_5|264_bp
atgaaggtgctgagggcctggctcctgtgcctgctgatgctgggcctggccctgcgggga
gctgcaagtcgtacccatcggcactccatggagatccgcacccctgacatcaatcctgcc
tggtacgccagtcgcgggatcaggcctgtgggccgcttcggtcggaggagggcaaccctg
ggggacgtccccaagcctggcctgcgaccccggctgacctgcttccccctggaaggcggt
gctatgtcgtcccaggatggctga

>gi568815596r:237475022_237686102|GENSCAN_predicted_peptide_6|333_aa
MLSLFLAATWASRASSGRGPLDSSPASGQGGGTTVVAELISQQPRGMRPKREVRGMAQAH
RTPQPRAAPSQPRVFKLVLLGSGSVGKSSLALRYVKNDFKSILPTVGCAFFTKVVDVGAT
SLKLEIWDTAGQEKYHSVCHLYFRGANAALLVYDITRKDSFLKAQQWLKDLEEELHPGEV
LVMLVGNKTDLSQEREVTFQRRAVLENEGSPEEGPRSAKKHNLDTKRGGVRAPRLQLSRI
LLLEVNQVSLGNSLINSAGFCGCFLQEGKEFADSQKLLFMETSAKLNHQVSEVFNTVAQE
LLQRSDEEGQALRGDAAVALNKGPARQAKCCAH

>gi568815596r:237475022_237686102|GENSCAN_predicted_CDS_6|1002_bp
atgctctccctcttcttggctgccacgtgggcttctcgtgcctcctccgggagaggtcct
ctggattcttcccctgcctctgggcagggcggaggaaccactgtggtggcggagcttatt
tcccagcagccccgcgggatgagacccaaacgagaagttaggggcatggcacaggcacac
aggaccccccagcccagggctgcccccagccagccccgtgtgttcaagctggttctcctg
ggaagtggctccgtgggtaagtccagcttggctcttcggtacgtgaagaacgacttcaag
agtatcctgcctacggtgggctgtgcgttcttcacaaaggtggtggatgtgggtgccacc
tctctgaagcttgagatctgggacacagctggccaggagaagtaccacagcgtctgccac
ctctacttcaggggtgccaacgctgcgcttctggtgtacgacatcaccaggaaggattcc
ttcctcaaggctcagcagtggctgaaggacctggaggaggagctgcacccaggagaagtc
ctggtgatgctggtgggcaacaagacggacctcagccaggagcgggaggtgaccttccag
aggagagctgtgttggaaaatgagggttccccagaagaagggcccaggagtgccaagaaa
cacaacttggacacgaaacgtggaggagtgcgggctccacggctgcagctttctcggatc
ttactgttggaagtgaaccaggtgtccttaggaaactctcttataaacagcgctggattt
tgtggctgtttccttcaggaagggaaggagtttgccgacagccagaagttgctgttcatg
gaaacttcggccaaactgaaccaccaggtgtcggaggtgttcaatacagtggcccaagag
ctactgcagagaagcgacgaggagggccaggctctacggggggatgcagctgtggctctg
aacaaggggcccgcgaggcaggccaaatgctgcgcccactag

>gi568815596r:237475022_237686102|GENSCAN_predicted_peptide_7|380_aa
MRSSWIQVSPKSNDWLPHEKREIWTQKRTQREEAMGRQRQKLGDGPQAKQRPGPPGAPEA
RERPGMNSPSEPPEGATSADTLIQSSGLQDLSQYISVISHTACGKVERTKGLLKTHLTKL
SHQLKKDWTILLPLSLLRSQTCPQNAARWNPRHLLLVEASLGLTWHSTLQIARSPLNRCP
PPWRASLRDYRPAKQSPQSPPSGAPGPSGPACPALGIRSVPVLRATRSMDMGTQGSGRKR
LPNRERLTAEDDALNQIAREDFERHPWLLPSRRQELLAIPSCDHQTCFQTLSNGPWGTRY
PTEDLCVRLLKIQVWLQEKGQGRPSTLVSPVEVGLETQSSFTPQDHPPDEKGDWMLDNRK
DPSGIHIAFCHQFTLDSSNP

>gi568815596r:237475022_237686102|GENSCAN_predicted_CDS_7|1143_bp
atgaggtcatcctggattcaggtgagccctaaatccaatgactggcttcctcatgagaaa
agagagatttggacacagaaacgcacacagagggaagaggccatgggaaggcaaaggcag
aaattgggtgatggtccacaggccaagcagcgcccaggaccaccaggagcaccagaggcc
agagagaggccaggaatgaattcaccctcggagcctccagaaggagccacgtctgctgac
accttgattcagtcttctggcctgcaagacttgagccaatacatttctgttataagccac
acagcttgtggaaaagtagaacggactaaaggtcttttaaaaacacacctcaccaagctc
agccaccaacttaaaaaggactggacaatacttttaccactttcccttctcagaagtcag
acctgtcctcagaatgctgcaagatggaacccccggcatctgctcctagtagaggccagt
ctgggcctgacctggcattccaccctgcagatagcgaggtccccactcaaccggtgccca
ccgccctggcgcgcgtcgctccgcgattaccggcccgccaaacagtccccgcaaagtcca
ccctccggggctcccggtccctcaggtcccgcgtgcccggccctgggcatccgcagcgtc
cccgtgctgcgggcgacgcggtcgatggacatgggcacccagggatcggggcgcaagcgg
ctccccaaccgggagcggctcacggcggaggacgacgcgctcaaccagatcgcgcgggag
gattttgaacggcatccctggcttctgcccagtaggcgccaggagctcctcgctattccc
agctgtgaccaccaaacatgcttccagacattgtcaaatggcccatggggaacaagatac
ccaactgaggatctctgtgtcagattactcaaaatccaggtgtggctgcaggagaaggga
cagggaagaccctcaactttagtctcacctgtggaggtggggctggagacccagtcgtcc
ttcaccccccaggaccaccccccagatgagaagggggactggatgttggacaacagaaag
gatccatctgggatccacattgcattttgtcatcagttcaccttggactcctccaatcca
tga

>gi568815596r:237475022_237686102|GENSCAN_predicted_peptide_8|202_aa
MPAAEHTATPPRPRHLLMDLSPVRESGGATAFMMDKFMMERSAVTTCTYFSLNMGRPLRA
SQCHTTGSTQHHLGAKGTPESGGDAGAAQPNAATGSARACELKLRGYPCKNTGAELAARG
RARAQGCRVHSWLRSTKVIQMELNVETREWSVRIQVKQARQNQAKRLVDSYTASISGLEA
TAVGSCTDYLEYRRNNEWPATG

>gi568815596r:237475022_237686102|GENSCAN_predicted_CDS_8|609_bp
atgccagcagctgaacacactgccacaccgccgaggccccgtcatttgctgatggacctc
agtccagtcagagagagtgggggcgccactgctttcatgatggacaagtttatgatggaa
agatccgccgtcaccacctgcacctacttttcactaaacatgggacgaccactgagggcc
tcccagtgccacacaacaggaagcacacagcaccacctaggagcaaaaggtacgccagaa
tctggtggagacgctggagctgcacagcccaatgcagccacgggcagcgcccgagcctgt
gaactaaagctgagaggctacccgtgcaaaaacacgggtgctgagttggctgctagggga
agggctagggctcagggctgccgggtccacagctggctgagaagcaccaaagtcattcaa
atggaattgaatgtggaaacacgcgagtggagtgtcagaatccaagtaaagcaagcaagg
caaaaccaagcaaaaagactcgtggactcatacactgcctctatttcaggtttggaggcc
actgctgtcggaagctgtactgattatttagaatatcgaagaaacaatgagtggccggcc
acggggtga

>gi568815596r:237475022_237686102|GENSCAN_predicted_peptide_9|77_aa
MRTQLAGQKAVSINRRSSCTGTSVPRHLGFPKKPDSTFDTDATNGVETRGEGFSGISATK
IKPTVRSEKHLESLQCV

>gi568815596r:237475022_237686102|GENSCAN_predicted_CDS_9|234_bp
atgagaacacagctggcagggcagaaagcagtgtcgatcaacaggaggtcgtcctgcacc
gggacgtcagtgccccgacacctcgggtttcccaaaaagcccgacagcacatttgataca
gatgccaccaacggggtggagacaaggggcgagggcttcagtggaatctcagcaactaaa
atcaagccgacggtcaggtcagagaagcatttggaaagcctccagtgcgtttag