GENSCAN 1.0	Date run:  4-Nov-116	Time: 13:34:19

Sequence gi568815597r:53760067_53983278 : 223212 bp : 42.35% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.07 Intr -    511    481   31  0  1   89   74    45 0.002   0.41
 1.06 Intr -  12423  12263  161  0  2   88  100   140 0.765  13.06
 1.05 Intr -  36738  36623  116  1  2   40   91    47 0.061  -0.55
 1.04 Intr -  37078  36833  246  2  0   83   85    52 0.079   0.91
 1.03 Intr -  40782  40627  156  1  0   54   89    96 0.275   5.36
 1.02 Intr -  43943  43862   82  2  1   75   72    32 0.246  -1.41
 1.01 Init -  44376  44257  120  0  0   33   73    97 0.703   2.94
 1.00 Prom -  45446  45407   40                              -4.05

 2.00 Prom +  49183  49222   40                              -7.65
 2.01 Init +  55540  55925  386  0  2   54   26   235 0.064  10.26
 2.02 Intr +  78148  78233   86  1  2   35   20   196 0.008   6.04
 2.03 Intr +  78256  78486  231  2  0   61   43   228 0.130  12.42
 2.04 Intr +  88259  88419  161  0  2   82   49    59 0.000   0.19
 2.05 Intr +  95097  95283  187  2  1   52   92   166 0.978  11.74
 2.06 Term +  96932  97071  140  0  2   37   41   178 0.910   5.14
 2.07 PlyA +  97610  97615    6                               1.05

 3.12 PlyA -  98399  98394    6                               1.05
 3.11 Term - 100087  99998   90  1  0  143   39    87 0.970   6.04
 3.10 Intr - 106316 106134  183  2  0  125   52   147 0.525  13.86
 3.09 Intr - 106858 106692  167  2  2   79   92    71 0.098   5.36
 3.08 Intr - 107881 107828   54  2  0   70   77    51 0.058   0.23
 3.07 Intr - 111422 111306  117  0  0  118   81    82 0.480  10.02
 3.06 Intr - 113184 113068  117  1  0   94   34   103 0.265   5.02
 3.05 Intr - 118336 118204  133  1  1   55   92    33 0.132  -0.30
 3.04 Intr - 123210 123047  164  1  2   45   20   201 0.314   7.77
 3.03 Intr - 129788 129647  142  2  1   43   78   171 0.450  10.61
 3.02 Intr - 134387 134130  258  2  0   54   63   260 0.927  16.84
 3.01 Init - 135830 135681  150  2  0   62   60   154 0.887  10.09
 3.00 Prom - 140015 139976   40                              -6.75

 4.00 Prom + 144226 144265   40                              -0.95
 4.01 Init + 144650 144743   94  1  1   -8   92    80 0.280  -0.61
 4.02 Intr + 146029 146228  200  2  2   92   36   171 0.497  10.45
 4.03 Intr + 150421 150554  134  0  2   -8   92   131 0.072   2.42
 4.04 Intr + 152871 152964   94  0  1   51   68    51 0.097  -1.55
 4.05 Term + 153028 153198  171  0  0   50   54   159 0.278   5.54
 4.06 PlyA + 153293 153298    6                               1.05

 5.00 Prom + 155816 155855   40                              -4.15
 5.01 Init + 157576 157578    3  0  0  117   81     0 0.145   2.25
 5.02 Intr + 186383 186483  101  1  2  107   96    40 0.746   4.69
 5.03 Intr + 187722 187759   38  0  2  117   72    29 0.128   1.19
 5.04 Intr + 191920 192406  487  2  1   85   94   438 0.110  35.24
 5.05 Intr + 198083 198214  132  2  0   84   52   129 0.991   7.74
 5.06 Intr + 200290 200408  119  1  2   86  103    48 0.988   5.29
 5.07 Intr + 201968 202056   89  0  2   55  116    37 0.987   1.97
 5.08 Intr + 202230 202343  114  2  0   82   78   104 0.991   8.52
 5.09 Intr + 203078 203143   66  1  0   68  115    14 0.101   0.28
 5.10 Intr + 206230 206314   85  0  1   48   28   132 0.110   1.67
 5.11 Term + 207599 207873  275  0  2  109   38   285 0.863  20.25
 5.12 PlyA + 208079 208084    6                               1.05

 6.04 PlyA - 208388 208383    6                               1.05
 6.03 Term - 215398 215000  399  1  0   10   48   439 0.377  26.23
 6.02 Intr - 216001 215840  162  1  0   38   40   166 0.205   6.05
 6.01 Init - 216033 216028    6  0  0   89   83     0 0.466   0.53
 6.00 Prom - 216484 216445   40                             -10.45

 7.00 Prom + 216803 216842   40                              -1.95
 7.01 Sngl + 219789 220139  351  2  0   67   42   233 0.995  12.40
 7.02 PlyA + 221275 221280    6                               1.05

 8.00 Prom + 221773 221812   40                              -9.15
 8.01 Sngl + 222540 222743  204  2  0   98   53   238 0.573  14.89
 8.02 PlyA + 222970 222975    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  16092  16090    3  0  0  113   81     0 0.811   1.85
S.002 Sngl +  55540  55929  390  0  0   54   32   233 0.839  10.27
S.003 Init +  78149  78233   85  1  1   37   20   196 0.851   8.96
S.004 Term +  78256  78515  260  2  2   61   34   247 0.826  11.33
S.005 Init +  93686  93755   70  1  1   61   97    67 0.973   6.17
S.006 Intr +  93839  93903   65  0  2  120   96   -18 0.962  -0.28
S.007 Init + 191856 192406  551  2  2   84   94   454 0.836  40.04


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:53760067_53983278|GENSCAN_predicted_peptide_1|304_aa
MVASKIFRFLVGRTVWWVESDGTSKHSITIHDVSAIVESYYLALQDLMLLSQYSPSRRQE
VFSLSQPGGHPHNWTAISRECLNLLNGMTQKLILYQEAAATNGRVSSSYPVEPKKLNSPE
ETAFQTPKSSQMPRPSVPPLVKTSLFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVNTC
YGSPQSPQLIRRGPRLWTSASDQQMTEFSNPSPSTSISAEGKTMRQPSVIYSWIQNKREQ
AVDKYFKLPHASSKPPRISGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLKIVRLPQ
RHGT

>gi568815597r:53760067_53983278|GENSCAN_predicted_CDS_1|912_bp
atggtagcaagtaagattttccgttttcttgtgggccgcacagtttggtgggtggaatca
gatgggacaagtaaacattcaattacaatacatgatgttagtgccattgttgagagctat
tatttagccttgcaggacctgatgttgctttctcaatattctccttcacgaagacaagaa
gttttcagcctcagccaaccaggtggacatccccacaattggacagccatttcaagggag
tgtttgaatcttttaaatggtatgactcagaaactgattctctatcaagaagctgctgct
acgaatgggagagtgtcttcatcttacccagtggaacctaagaaattaaattctccagaa
gaaactgcttttcagacaccaaaatctagccagatgcctcggccttcagtgccaccatta
gttaaaacatcactgttttcttcaaaattatctacacctgatgttgtgagcccatttggg
accccatttggctctagtgtaatgaatcggatggctggaatttttgatgtaaacacctgc
tatgggtcaccgcaaagtcctcagctaataagaagggggccaagattgtggacatcagct
tctgatcagcaaatgactgaattttctaatccttctccatctacctctattagtgctgag
ggtaagacaatgagacaacccagtgtgatttattcatggattcagaataaacgtgaacag
gcagtcgacaagtactttaagcttcctcatgcttccagtaaaccaccccggatttcagga
agccttgtggacacttcatataaaacattaagatttgcattcagagcatcactgaaaact
gccatctatcgaataactactacatttggtgaacatctgaagattgtgaggctcccccag
cgacatggaact

>gi568815597r:53760067_53983278|GENSCAN_predicted_peptide_2|396_aa
MRQEKEFKGIQISKKEVKLSLFADDMIVYLKNPKGSSRKFLELIKEFSKVSSYKINAHKS
VALLYTNSDQVENQIKNSNPFRIAAKKIKYLRVYLTKESKDLYKENYKTLLKEIRQRKQM
ETHPMLMDGMSRDLPAQGRLTAVAMEMAAPSLGRTGDLQRQEGPRRTLLGLPQTLPERSP
AQAPTHPCEASSGQAQQARTAAQTRPANAAVTPGTALWRPNGPFEAGSSGAPEADTLLLS
CGSFHKNADTMSVLALPEDSLCLNFWVCGDTFSPFVVDADLFLILLSQEDLMTKDSPEAL
SASLIKALITLRYDYLLMALLRTAPPVTAPGKLTPIWMRSQALKPKQGFPDSIASLSLYG
FDEVSDHTERPTWQATEGGLQMTVSKKALILRSHRN

>gi568815597r:53760067_53983278|GENSCAN_predicted_CDS_2|1191_bp
atgagacaagagaaagaatttaaaggcatccaaatcagtaaaaaggaagtcaaactgtca
ctgtttgctgatgatatgatcgtttaccttaaaaaccctaagggctcctccagaaagttc
ctagaactgataaaagaattcagcaaagtttccagctacaagattaatgcacacaaatca
gtagctcttctatacaccaacagtgaccaagtggagaatcaaatcaagaactcaaaccct
tttagaatagctgcaaaaaaaataaaatacttaagagtatacctaaccaaggagtcgaaa
gatctctacaaggaaaactacaaaacattgctgaaagaaatcaggcaacgcaaacaaatg
gaaacacatcccatgctcatggatggtatgtcccgcgacctgccggcgcagggccggctc
acggccgtggccatggagatggcggcccctagtctagggcgtacaggagaccttcaaagg
caggaaggccccaggaggaccctgctgggtctgcctcaaacgctgcctgagcgaagcccg
gcccaggctccaacccatccctgcgaggcttcgtctggacaagctcaacaggccaggact
gccgcgcagacacgtcccgcaaacgcggctgtaactccaggaaccgccctctggcgacca
aacggtcccttcgaagcagggtccagcggggcgccagaagcagataccctgttgctttcc
tgtggttctttccataaaaatgctgataccatgtcagtcttggcgctgccagaagattcc
ctctgcttgaatttttgggtttgtggggataccttttcaccttttgttgtagatgccgat
ttgtttttgattttgctatcccaggaggatttaatgacaaaggactctccagaagccctc
tctgcatcattaattaaagccctgatcacactgcgatatgattatctgctgatggccctc
ctccggacagccccacctgtcactgcccctggaaagctcaccccaatctggatgcggtct
caagccctcaagccaaagcagggcttcccagactcgattgcctctctctccctttatggc
tttgatgaagtgagtgatcatacagagaggcccacgtggcaagcaactgagggtggtctc
caaatgaccgtcagcaagaaggccctcattctacgaagccacaggaattga

>gi568815597r:53760067_53983278|GENSCAN_predicted_peptide_3|524_aa
MNEGDIDDDGEGKGILDQPMSAKAKTRESTRDVQGPTVCPKEMSVAGSSESLPTDLQDEP
EILGAEKGWYPVVVAEMGVPGHTRLLAHGQDVPLDSVWKQYQKHFTHDHMHSHLQEHPEP
LQPQPWLGQPHLGKAREAGLFPEEAERFRPPDLRLPATGLDRNRRGATEARAFSGPGGRL
TPREFGNAATSLTANPDATTVNIEDPGETPKHQPGSPRGSGREEDDELLGNDDSDKTEVF
DRIKGSLLPIPGKNFVRLYIRSNPDLYGMFSTDLFTVFQLNLGTLYYLLRLDILLIVSPE
CMGALEAVTVSLLPIIVSPAEGPFWICATLVFAIAISGNLSNFLIHLGEKTYHYVPEFRK
EEGKGILQGVLLLEEEERVSIAATIIYAYAWLVPLALWGFLMWRNSKVMNIVSYSFLEIV
CVYGYSLFIYIPTAILWIIPQKAVRWILVMIALGISGSLLAMTFWPAVREDNRRVALATI
VTIVLLHMLLSVGCLAYFFDAPEMDHLPTTTATPNQTVAAAKSS

>gi568815597r:53760067_53983278|GENSCAN_predicted_CDS_3|1575_bp
atgaatgagggggatatagacgacgatggagaggggaagggcattcttgaccagccgatg
tcagcaaaggcaaagacaagggaaagtacaagagatgtacaaggcccaacagtttgtccg
aaagaaatgagtgtggcggggagctcagagtcgctgccaacggaccttcaagacgaacca
gaaatactgggtgctgaaaaaggttggtatccagttgtcgtggctgaaatgggggttcct
ggtcatacccgtcttctcgcccatggccaggatgttccgcttgactctgtctggaaacaa
tatcagaagcactttacccacgaccacatgcacagccacctccaagagcacccagagcct
cttcagccacagccctggctggggcagccccatctcggcaaagccagagaggcggggctc
ttcccggaggaggcggagaggttccgccccccggatctccggcttccggcaactgggctg
gaccgaaaccggcgcggagcaactgaggcccgagccttctcgggacccgggggacgccta
accccgcgagaatttggcaatgcagccacttctctgacagcaaacccagatgccaccaca
gtaaacattgaggatcctggtgaaaccccaaaacatcagccaggatccccaagaggctca
ggaagagaagaagatgatgagttactgggaaatgatgactctgacaaaactgaggtcttt
gacagaattaaaggatctcttttgccaatacccgggaaaaactttgtgaggttatatatc
cgcagcaatccagatctctatggtatgtttagtactgatttgtttaccgtatttcagttg
aacttgggcaccctgtactaccttctgagattagatattttattgatcgtctccccggag
tgcatgggtgcactagaggcagtgactgtgtctctgttgcccatcatcgtgtccccagca
gagggccccttttggatatgtgccacgttggtctttgccatagcaattagtgggaatctt
tccaacttcttgatccatctgggagagaagacgtaccattatgtgcccgaattccgaaaa
gaagagggaaagggaatcctccagggcgtgctgctactagaggaagaggagagagtgtcc
atagcagctaccatcatctatgcctatgcctggctggttcctcttgcactctggggtttc
ctcatgtggagaaacagcaaagttatgaacatcgtctcctattcatttctggagattgtg
tgtgtctatggatattccctcttcatttatatccccaccgcaatactgtggattatcccc
cagaaagctgttcgttggattctagtcatgattgccctgggcatctcaggatctctcttg
gcaatgacattttggccagctgttcgtgaggataaccgacgcgttgcattggccacaatt
gtgacaattgtgttgctccatatgctgctttctgtgggctgcttggcatacttttttgat
gcaccagagatggaccatctcccaacaactacagctactccaaaccaaacagttgctgca
gccaagtccagctaa

>gi568815597r:53760067_53983278|GENSCAN_predicted_peptide_4|230_aa
MFKFDQFKRLIEDFSSIADFLVIYIEEAHASDGWAFKNNMDIRNHQNLQDRLQAAHLLLA
RSPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYKNQLWEEFQLLGRDEELEEEGLE
TGGGSHPLLAKRFKPVHIGGDDGNHTLRTAAIVGVVGALPRCLLPSHCTHEPAAELSYPE
IPVKLCPSPECGPQPVTDGFEIPKPFPLLQGGAVYFSGASHASELPMGSD

>gi568815597r:53760067_53983278|GENSCAN_predicted_CDS_4|693_bp
atgttcaaatttgaccagttcaagaggcttattgaagactttagttccatagcagatttt
cttgtcatttacattgaagaagcacatgcatcagatggctgggcttttaagaacaacatg
gacatcagaaatcaccagaaccttcaggatcgcctgcaggcagcccatctactgctggcc
aggagcccccagtgccctgtggtggtggacaccatgcagaaccagagcagccagctctac
gcagcactgcctgagaggctctacataatccaggagggcaggatcctctacaagaaccaa
ttatgggaagaattccagttgttaggaagagatgaggagttggaagaggagggattagaa
acaggaggaggcagtcatcctctccttgccaaaagatttaaacctgtccacattggtggt
gatgatgggaaccacactttgagaaccgctgctatagtaggtgttgttggtgctctgccc
agatgccttttaccaagccattgtactcatgagccagctgctgagctatcttacccagaa
atacctgtgaaattatgtccttcacctgagtgtggcccacagccagtgactgatggattt
gaaattccaaagccttttcccttgctgcaaggtggggcagtctacttctccggtgccagt
catgcttcagagctccctatgggatcagactga

>gi568815597r:53760067_53983278|GENSCAN_predicted_peptide_5|502_aa
MLCARGAEPFPVSRAAGGGSRHRGAAARCPGQGHRLHPVNTRGIEQVVATKAMSYYLSSE
NHLDPGPIYMRENGQLHMVNLALDGVRSSLQKPRPFRLFPKGFSVELCMNREDDTARKEK
TDHFIFTYTREGNLRYSAKSLFSLVLGFISDNVDHIDSLIGFPEQIAEKLFSAAEARQKF
TEPGAGLRALQKFTEAYGSLVLCSLCLRNRYLVISEKLEEIKSFRELTCLDLSCCKLGDE
HELLEHLTNEALSSVTQLHLKDNCLSDAGVRKMTAPVRVMKRGLENLTLLDLSCNPEITD
AGIGYLFSFRKLNCLDISGTGLKDIKTVKHKLQTHIGLVHSKVPLKEFDHSNCKTEGWAD
QLQAIMQDGRTIHLLDCSVTSPQIVLQWERVTAEAVKPRETSEPRAAAQRFYGKRSRAEA
PLKCPLADTHMNSSEKLQFYKEKAPDCHGPVLKHEAISSQESKKSKKRPFEESETEQNNS
SQPSKQKYVCLAVEDWDLLNSY

>gi568815597r:53760067_53983278|GENSCAN_predicted_CDS_5|1509_bp
atgctttgtgcccggggtgctgagcccttccccgtcagccgggccgcgggaggagggagc
cgtcaccgaggagctgccgctcgctgccccgggcaggggcacaggcttcatccagtgaat
actagagggatcgaacaggtggttgcaaccaaggcaatgtcttactacctcagctcagaa
aaccacctggacccagggcccatctacatgcgagaaaatgggcagctgcacatggtcaat
ctggctctggatggtgtcaggagtagcctgcagaagccaaggcctttcagactgttcccc
aaaggcttttctgtggagctttgcatgaacagggaagacgacactgcacggaaagagaag
actgatcatttcatcttcacatacacccgagaggggaatcttcggtactccgccaaatcc
ctcttcagccttgtcctgggtttcatctccgacaatgtggatcacattgattcccttatt
ggctttcctgagcagattgctgaaaagctgttctctgctgctgaagccagacagaaattc
actgagccaggtgcagggctgagggctttacagaaattcactgaggcctatggaagtttg
gtgctttgctccctgtgtttgcgaaacaggtatctcgtgatttcagaaaagcttgaggag
attaagtctttccgggagctgacctgcctggatctttcctgttgcaagcttggagatgag
catgaacttctagaacatctcaccaatgaagccctgtctagtgtaactcagctccacctg
aaggataattgtttatctgatgctggggtgcggaagatgacagcaccagttcgagtgatg
aaaagaggccttgagaatctaacattattagacttatcatgtaaccctgagatcacagat
gcaggcattggatacctcttttcttttaggaaactaaactgcttagatatctctgggaca
gggctcaaggacatcaaaaccgtcaagcacaagctccagacccacataggccttgttcac
tccaaagtgcctttgaaggaatttgatcatagtaactgcaagacagagggctgggctgac
cagctccaagccataatgcaggatggtagaactatccacctgctggattgtagcgtcacc
tctccacagatcgttctgcagtgggagcgtgtgactgcggaagctgtgaagccacgggag
acctcggagcctagagcagcagctcagcgcttctatgggaagcggtctcgagcagaagcc
ccactgaagtgtcccctggcagacacccacatgaactcttccgagaaactccagttctat
aaagagaaagccccagattgccatgggccagtgttgaaacacgaagctatctcaagccag
gagtcaaagaagagcaagaagagaccttttgaggagtcagagacagaacagaataactct
tcacaaccttcaaagcagaaatatgtatgtcttgctgtggaagactgggacttgttaaat
tcctattga

>gi568815597r:53760067_53983278|GENSCAN_predicted_peptide_6|188_aa
MEPGSGHRRCCQGEEGHDPKEREQLRKPFIGGLSFETTDDGLREHFEKWVTLTDCVRGCG
DGSGNFIVEKTLEVVEVILAVVETLVEEEAMVVEVVAAEIVMEEVMVDIMDLEVMVATMA
AVLVIVVEGAMVVVDQDVETKVVDMVAVVEDMMVTMKEEILAVVTMVVVGTIMILEIIMD
NSNQIKDS

>gi568815597r:53760067_53983278|GENSCAN_predicted_CDS_6|567_bp
atggagcccggctccggccatcgccgttgctgccagggggaggagggccatgatccaaag
gaacgagagcagttgagaaaaccgtttattggtggtctgagctttgaaactacagatgat
ggtttaagagaacattttgagaaatgggtcacactcacagattgtgtgagaggttgtgga
gatggatctggcaattttattgtggaaaaaactttggaggtggtggaggtaattttggct
gtggtggaaactttggtggaggaggaggctatggtggtggaggtggtggcagcagagata
gttatggaggaggtgatggtggatataatggatttggaggtgatggtggcaactatggcg
gcggtcctggttatagtagtagagggggctatggtcgtggtggaccaggatgtggaaacc
aaggtggtggatatggtggcggtggtggaggatatgatggttacaatgaaggaggaaatt
ttggccgtggtaactatggtggtggtgggaactataatgattttggaaattataatggac
aacagcaatcaaattaaggactcatga

>gi568815597r:53760067_53983278|GENSCAN_predicted_peptide_7|116_aa
MVKERGNRTVQPYGNLERGESQEAKDCSAPPPGPEQVKETGRHQPFDLELRRWAEKNLPE
KKAILYQEARSTTHVHMLQGASQENESGLWPPSSRLHHSLPFGKAVAPKEQKETKR

>gi568815597r:53760067_53983278|GENSCAN_predicted_CDS_7|351_bp
atggtcaaagaaagaggaaacaggacagtgcagccttatggaaacctagagaggggagag
tcccaagaagccaaggactgctcagcgccgcctcctggtccagagcaggtaaaggagaca
ggcagacaccagccatttgatttggagttgaggaggtgggcagagaagaacctcccagag
aagaaagccattttatatcaggaagcccgtagcacaacacacgttcatatgctgcaagga
gcaagccaggagaatgagagcggtctctggccaccaagctccaggctgcatcattccttg
cccttcgggaaagcggtggcccccaaggagcaaaaggaaaccaagcgataa

>gi568815597r:53760067_53983278|GENSCAN_predicted_peptide_8|67_aa
MAPAACGGSFQAAAQGRGAEAEPNRIPELKQQELPGQHTGEEERHRDISGDNAQRENFSG
VLLSMCV

>gi568815597r:53760067_53983278|GENSCAN_predicted_CDS_8|204_bp
atggctccagctgcctgcgggggaagtttccaggctgcagcacagggaaggggagcagag
gcggagcccaacagaattcctgaattgaagcagcaggagctcccaggacagcatactgga
gaggaggagcggcacagagacatctccggagataatgcgcagagagagaacttcagcgga
gtgctgctcagcatgtgcgtgtga