GENSCAN 1.0	Date run:  4-Nov-116	Time: 13:31:10

Sequence gi568815583r:82918070_83167151 : 249082 bp : 43.36% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +    624    769  146  1  2   91   89    15 0.251   1.90
 1.02 Intr +   1234   1287   54  0  0  127   52     8 0.285   0.28
 1.03 Intr +   8068   8188  121  0  1   42   81    81 0.598   2.87
 1.04 Intr +  10027  10178  152  2  2   68   91    84 0.757   6.58
 1.05 Term +  24161  24367  207  1  0   85   37   147 0.310   6.64
 1.06 PlyA +  25969  25974    6                               1.05

 2.00 Prom +  26230  26269   40                              -3.96
 2.01 Init +  34551  34685  135  2  0   53   -9   148 0.021  -0.26
 2.02 Intr +  34812  35013  202  2  1   67  110    56 0.043   4.56
 2.03 Intr +  35384  35523  140  0  2   88   52    77 0.046   4.28
 2.04 Term +  45807  45914  108  2  0   72   37   107 0.302   2.51
 2.05 PlyA +  46278  46283    6                               1.05

 3.00 Prom +  48317  48356   40                              -2.16
 3.01 Init +  70950  71091  142  2  1   56   48   156 0.937   8.70
 3.02 Term +  71812  72020  209  2  2   63   39   201 0.992  10.20
 3.03 PlyA +  72298  72303    6                               1.05

 4.12 PlyA -  73012  73007    6                               1.05
 4.11 Term -  81973  81902   72  1  0   88   38    74 0.777   0.31
 4.10 Intr -  82262  82017  246  2  0   87   86    66 0.754   3.96
 4.09 Intr -  90606  90479  128  1  2   74  100    38 0.952   4.00
 4.08 Intr -  92294  92168  127  2  1   73   74    69 0.834   4.25
 4.07 Intr - 100784 100638  147  2  0   63   69   100 0.636   6.03
 4.06 Intr - 102693 102606   88  2  1   85   92    45 0.780   4.57
 4.05 Intr - 112259 112067  193  0  1  100   70    39 0.553   1.85
 4.04 Intr - 123856 123659  198  2  0   67  110   127 0.687  12.12
 4.03 Intr - 132109 132004  106  1  1   56   97    46 0.351   2.09
 4.02 Intr - 138476 138320  157  1  1   74  111    72 0.873   8.11
 4.01 Init - 149082 148682  401  0  2   71   83   839 0.883  75.84
 4.00 Prom - 153071 153032   40                              -5.16

 5.00 Prom + 159910 159949   40                              -3.36
 5.01 Init + 164764 164811   48  0  0   92   41    73 0.724   2.07
 5.02 Intr + 164817 164934  118  2  1   60   33   111 0.285   2.84
 5.03 Term + 175334 175461  128  0  2   79   43    99 0.642   2.94
 5.04 PlyA + 175755 175760    6                              -0.45

 6.00 Prom + 176788 176827   40                              -2.86
 6.01 Init + 189612 189703   92  2  2   70   61   219 0.268  17.39
 6.02 Intr + 194728 194831  104  1  2   97   88   104 0.279  11.12
 6.03 Intr + 197776 197873   98  2  2   92   64    74 0.240   5.13
 6.04 Intr + 201509 201612  104  1  2   63   83    87 0.631   4.67
 6.05 Term + 218450 218603  154  2  1   69   42    71 0.055  -2.01
 6.06 PlyA + 218832 218837    6                               1.05

 7.06 PlyA - 219112 219107    6                               1.05
 7.05 Term - 221206 221201    6  1  0  111   36     0 0.061  -5.03
 7.04 Intr - 233292 233146  147  0  0   41   74   187 0.856  13.03
 7.03 Intr - 239504 239346  159  2  0   85   27   123 0.939   6.08
 7.02 Intr - 239972 239834  139  1  1   77   95   121 0.964  12.17
 7.01 Intr - 246006 245930   77  0  2   69  111    43 0.861   3.01

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815583r:82918070_83167151|GENSCAN_predicted_peptide_1|226_aa
XTHTTGSVTMAETWESHTQHTAGTSPSLSSPQQPRLSASYLVVSSNGPQALLREVTTGCS
SIQDQGQSTRAAITKYERLRIAYKQQKFISHSSDERSKVKVPVDLVSVLAVVSLLEMHCW
PKDQPEVHYWAKSIVCKGNLHLDCLDAALFPLAATATQEGRDSVLRPVFLVSSPEKVLNI
QVMVIGQRIKKGKRADELMKGDQKGIQIHTSKDGSPETYRDPETTD

>gi568815583r:82918070_83167151|GENSCAN_predicted_CDS_1|681_bp
ntgactcacaccactggatctgtcactatggcagaaacctgggaatctcacacccagcac
acagcaggaacatctccctcgctgtcctctcctcagcagcccaggctgtcagcctcctac
ctagtagtgtcctccaatgggccacaggccttactcagggaagtcacaacgggttgctcg
tccatacaggatcaaggacagtccacacgggctgctatcacaaaatacgagaggctgcgt
atagcttataaacaacagaaatttatttctcacagttctgatgagaggtccaaagtcaag
gtgccagtagatttggtgtctgtattggcagtggtttctctgctagaaatgcactgctgg
cctaaagaccagccagaagtacactactgggctaaatctattgtgtgcaagggtaacctc
cacctggactgcttggacgcagctctcttcccactggcggccaccgcaacacaggaaggc
agggactctgtcttacgacctgtcttcctggtgtctagcccagagaaggtactcaacatt
caggtgatggtcattggccaaaggatcaagaaaggtaaaagagctgacgaactgatgaag
ggtgatcagaaaggaattcagatccatacgagtaaggatgggagtccagagacatacagg
gaccctgaaactactgactag

>gi568815583r:82918070_83167151|GENSCAN_predicted_peptide_2|194_aa
MRRPVRARLSPGAAPFRGAARLPLLPLPPPPPGAGGRGLGGRAGAPRSRRFSPGPPSPRC
RPRVGAPPPHADPGPWRSAINILPDGLKVPFTPGGDFRATFTLQIREPRPGEGPEFLPKA
GTGTNLTFIPRDFHGIIFCWEHTAHISLASQDSKKVKGQGLLLPPLLPKALDDPKFWQPH
ALAASLQLSTDDEM

>gi568815583r:82918070_83167151|GENSCAN_predicted_CDS_2|585_bp
atgcggcggcccgtgcgcgcccggctcagccccggcgccgctccattccgcggggctgcg
cggctgccactgctgccactgccgccaccgccgccaggcgcgggcgggcgggggctgggc
ggccgcgctggggcgccgcgcagtcgccgcttttctcccgggccacccagtcctcggtgc
cggccccgcgttggcgcgcccccgccccacgccgacccggggccctggcgcagtgccatc
aacatcctgcctgatggacttaaagtcccattcacacctggcggggactttagggctacc
tttactttgcagataagggaaccgaggcctggggagggtcctgagtttctaccaaaggct
ggcactgggactaacctaaccttcatcccccgggacttccacgggatcatcttctgctgg
gaacacaccgcccacataagcctggcatctcaggacagtaaaaaagtcaagggacagggc
ctcttacttccacctctgctgccaaaagccttggatgatcccaagttctggcagccccat
gccctggctgcttccctacaactgagcactgacgatgagatgtag

>gi568815583r:82918070_83167151|GENSCAN_predicted_peptide_3|116_aa
MTDTAEAVPKFEEMFASRFTENDKEYQEYLKRPPESPPIVEEWNSRAGCKTTDSSEAGTT
DGGGQVTIDPISGMDDPGVTTTRNTDKNLTIPSNMDIMVTTSGLLTVTTDRNVGSF

>gi568815583r:82918070_83167151|GENSCAN_predicted_CDS_3|351_bp
atgactgacactgccgaagctgttccaaagtttgaagagatgtttgctagtagattcaca
gaaaatgacaaggagtatcaggaatacctgaaacgccctcctgagtctcctccaattgtt
gaggaatggaatagcagagctggttgcaagacaacagacagttcagaggcagggacaaca
gatgggggtggccaagtgacaatcgatccaatcagtggcatggacgatcctggggtaaca
actacccgcaacacagacaagaaccttactatccccagcaatatggacattatggttaca
accagcggcctccttacggttactactgatagaaatgttggcagcttttag

>gi568815583r:82918070_83167151|GENSCAN_predicted_peptide_4|620_aa
MASLGPAAAGEQASGAEAEPGPAGPPPPPSPSSLGPLLPLQREPLYNWQATKASLKERFA
FLFNSELLSDVRFVLGKGRGAAAAGGPQRIPAHRFVLAAGSAVFDAMFNGGMATTSAEIE
LPDVEPAAFLALLRFLYSDEVQIGPETVMTTLYTAKKYAVPALEAHCVEFLTKHLRADNA
FMLLTQARLFDEPQLASLCLDTIDKSTMDAISAEGFTDIDIDTLCAVLERDTLSIRESRL
FGAVVRWAEAECQRQQLPVTFGNKQKVLGKALSLIRFPLMTIEEFAAGPAQSGILSDREV
VNLFLHFTVNPKPRVEYIDRPRCCLRGKECCINRFQQVESRWGYSGTSDRIRFTVNRRIS
IVGFGLYGSIHGPTDYQVNIQIIEYEKKQTLGQNDTGFSCDGTANTFRVMFKEPIEILPN
VCYTACATLKGKSQSKEPERPLPPLGPVAVDPKGCVTIAIHAKPGSKQNAVTDLTAEAVN
VAIAAPPSEGEANAELCRYLSKVLELRKSDVVLDKVSEIHVASVSENGSRLGNWQGANFL
SRCQLINLSEEHNCQIDCIVGSASENILSLWEISLRESSFEGCLESLESEPGKLGARGWT
YGISQPQKVFWDNTGDNDPS

>gi568815583r:82918070_83167151|GENSCAN_predicted_CDS_4|1863_bp
atggcctcactcgggcctgccgcagctggggagcaggcgtcgggggctgaggcggagccg
ggccccgcggggccgccgccgccgccctcaccgtcctctctggggcccctgctccccctg
cagcgggaacctctctacaactggcaggcgaccaaggcgtcgctgaaggagcgcttcgcc
ttcctcttcaactcggagctgctgagcgatgtgcgcttcgtactgggcaagggtcgcggc
gccgccgccgctgggggcccgcagcgcatccccgcccaccgcttcgtgctggcggccggc
agcgccgtctttgacgccatgttcaacggcggcatggccaccacgtcggccgagatcgag
ctgccggacgtggagcccgcagccttcctggcgctgctgagatttctatattcagatgaa
gttcaaattggtccagaaacagttatgaccactctttatactgccaagaaatacgcagtc
ccagccttggaagcacactgtgtagaatttctcaccaaacatcttagggcagataatgcc
tttatgttacttactcaggctcgattatttgatgaacctcagcttgctagtctttgtcta
gatacaatagacaaaagcacaatggatgcaataagtgcagaagggtttactgatattgat
atagatacactctgtgcagttttagagagagacacactcagtattcgagaaagtcgactt
tttggagctgttgtacgctgggcagaagcagaatgtcagagacaacaattacctgtgact
tttgggaataaacaaaaagttctaggaaaagcactttccttaatccggttcccactgatg
acaattgaggaatttgcagcaggtcctgctcaatctggaattttgtcagatcgtgaagtg
gtaaacctctttcttcattttactgtcaaccctaaaccccgagttgaatacattgaccga
ccaagatgctgtctcaggggaaaggaatgctgcatcaatagattccagcaagtagaaagc
cgctggggttacagtgggacgagtgatcgaatcagattcacagttaatagaaggatctct
atagttggatttggcttgtatggatctattcatggccctacagattatcaagtgaatata
cagatcattgaatatgagaaaaagcaaaccctgggacagaatgataccggctttagttgt
gatgggacagctaacacattcagggtcatgttcaaggaacccatagagatcctgcccaat
gtgtgctacacagcatgtgcaacactcaaaggtaaaagccagagcaaggaaccagagaga
ccacttcctcccttaggtcctgtggcagttgatcctaaaggatgcgtcaccatagccatc
catgcaaaacctggctccaaacaaaatgctgtaacagatttgacagcagaggctgtaaat
gtagctattgcagcacctccatcagagggagaggctaatgctgagctctgtcggtatctt
tccaaggtcctagaactcaggaagagtgatgtggttttggataaggtttcagaaatccac
gtagccagtgtttctgaaaatggatctaggctgggcaattggcaaggagctaatttctta
tcaagatgccagcttattaacttgagtgaagaacacaactgccaaatagactgtatagtg
ggatctgctagtgagaacattctgtccctttgggaaatctctttaagagaatcatcattt
gaaggctgcttggagagcctggaatcagagccagggaaattaggggccaggggatggacc
tatggtatcagccagccacagaaggtcttttgggacaacactggagataatgatccttca
tag

>gi568815583r:82918070_83167151|GENSCAN_predicted_peptide_5|97_aa
MDLLGEGEVTLLLDLLGPDGQCGSDSVELMGSVKAKVRLSQLESGPLALTERNKAGLLYS
CHPINARGPLSLTPGLQLLFPEPHVFLCIVYCLVLVE

>gi568815583r:82918070_83167151|GENSCAN_predicted_CDS_5|294_bp
atggacctgctgggagagggtgaggtgaccctattgctcgacctcctggggccagatgga
caatgtggcagtgattcagtggagctcatggggtcagtgaaagccaaggtgaggctgagc
cagctggagagtggccctttggctctgaccgagaggaacaaagctggcttgctgtacagc
tgtcaccccatcaatgctaggggacccctcagcctcactcctgggctgcagctcctgttt
cctgaaccccacgtcttcctctgcatcgtgtactgcctggttttggtggagtaa

>gi568815583r:82918070_83167151|GENSCAN_predicted_peptide_6|183_aa
MSASAATGVFVLSLSAIPVTYVFNHLAAQHDSWTIVGVAALILFLVALLARVLVKRKPPR
DPLFYVYAVFGFTSVVNLIIGLEQDGIIDGFMTHYLREGEPYLNTAYGHMICYWDGSAHY
LMYLVMVAAIAWETAYVYRVPEEAKILFLALNIAYGVLPQLLAYRCIYKPEFFIKTKAEE
KVE

>gi568815583r:82918070_83167151|GENSCAN_predicted_CDS_6|552_bp
atgagtgcctctgcggccaccggggtcttcgtgctgtccctctcggccatcccggtcacc
tatgtcttcaaccacctggcggcccagcatgattcctggactattgtaggggttgctgcc
ctcatcctgttcctggtagcactgctggctcgtgtcctcgtcaaaagaaaaccaccccgg
gacccactgttctatgtgtatgcagtttttggatttaccagcgtggtgaacctcatcata
ggactggagcaagatggaatcattgacgggttcatgacacactacttgagagagggtgaa
ccgtatctgaacaccgcatatgggcacatgatctgctactgggatggctctgctcattat
ctgatgtacctggtgatggtggcagccatagcatgggaaactgcttatgtctacagagtc
cctgaagaagcaaaaatcctttttttagcattaaacatagcatatggagttcttcctcag
ctcttggcctatcgttgtatctacaaaccagagttcttcataaaaacaaaggcagaagaa
aaagtggaataa

>gi568815583r:82918070_83167151|GENSCAN_predicted_peptide_7|175_aa
IDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPYKEYKDKFGKSNKRKGFNEGLWEI
ENNPGVKFTGYQAIQQQSSSETEGEGGNTADASSEEEGDRVEEDGKGKRKNEKAGSKRKK
SYTSKKSSKQSRKSPGDEDDKDCKEEENKSSSEGGDAGNDTRNTTSDLQKTSEGT

>gi568815583r:82918070_83167151|GENSCAN_predicted_CDS_7|528_bp
attgatgaactcccagagggcgctgtgaagcctccagcaaacaagtatcctatcttcttt
tttggcacccatgaaactgcatttctaggtcccaaagacctttttccatataaggagtac
aaagacaagtttggaaagtcaaacaaacggaaaggatttaacgaaggattgtgggaaata
gaaaataacccaggagtaaagtttactggctaccaggcaattcagcaacagagctcttca
gaaactgagggagaaggtggaaatactgcagatgcaagcagtgaggaagaaggtgataga
gtagaagaagatggaaaaggcaaaagaaagaatgaaaaagcaggctcaaaacggaaaaag
tcatatacttcaaagaaatcctctaaacagtcccggaaatctccaggagatgaagatgac
aaagactgcaaagaagaggaaaacaaaagcagctctgagggtggagatgcgggcaacgac
acaagaaacacaacttcagacttgcagaaaaccagtgaagggacctaa