Result of FASTA (omim) for pF1KB8467
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8467, 449 aa
  1>>>pF1KB8467 449 - 449 aa - 449 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6494+/-0.000411; mu= 21.0081+/- 0.026
 mean_var=58.2429+/-11.545, 0's: 0 Z-trim(110.6): 67  B-trim: 311 in 1/50
 Lambda= 0.168056
 statistics sampled from 18949 (19023) to 18949 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.606), E-opt: 0.2 (0.223), width:  16
 Scan time:  6.580

The best scores are:                                      opt bits E(85289)
NP_061816 (OMIM: 605742,613180) tubulin alpha-8 ch ( 449) 3014 739.4 4.5e-213
NP_005991 (OMIM: 191110,616208) tubulin alpha-4A c ( 448) 2782 683.1 3.9e-196
NP_005992 (OMIM: 602528) tubulin alpha-3C/D chain  ( 450) 2781 682.9 4.6e-196
NP_006073 (OMIM: 602530) tubulin alpha-1B chain [H ( 451) 2774 681.2 1.5e-195
NP_001257328 (OMIM: 602529,611603) tubulin alpha-1 ( 451) 2772 680.7 2.1e-195
NP_006000 (OMIM: 602529,611603) tubulin alpha-1A c ( 451) 2772 680.7 2.1e-195
NP_001265481 (OMIM: 191110,616208) tubulin alpha-4 ( 433) 2679 658.2 1.2e-188
NP_001180343 (OMIM: 605742,613180) tubulin alpha-8 ( 383) 2553 627.6 1.8e-179
NP_001257329 (OMIM: 602529,611603) tubulin alpha-1 ( 416) 2541 624.7 1.4e-178
XP_016860313 (OMIM: 191110,616208) PREDICTED: tubu ( 295) 1905 470.4 2.8e-132
NP_821133 (OMIM: 156610,191130,615771) tubulin bet ( 444) 1262 314.6 3.3e-85
NP_006079 (OMIM: 602660) tubulin beta-4B chain [Ho ( 445) 1251 311.9 2.1e-84
NP_001060 (OMIM: 615101,615763) tubulin beta-2A ch ( 445) 1240 309.3 1.3e-83
NP_006077 (OMIM: 600638,602661,614039) tubulin bet ( 450) 1239 309.0 1.6e-83
NP_001276058 (OMIM: 602662) tubulin beta-4A chain  ( 444) 1238 308.8 1.9e-83
NP_006078 (OMIM: 602662) tubulin beta-4A chain iso ( 444) 1238 308.8 1.9e-83
NP_821080 (OMIM: 610031,612850) tubulin beta-2B ch ( 445) 1238 308.8 1.9e-83
NP_001276056 (OMIM: 602662) tubulin beta-4A chain  ( 489) 1238 308.8   2e-83
NP_001276052 (OMIM: 602662) tubulin beta-4A chain  ( 495) 1238 308.8   2e-83
NP_001290453 (OMIM: 615103) tubulin beta-6 chain i ( 446) 1235 308.1 3.1e-83
NP_115914 (OMIM: 615103) tubulin beta-6 chain isof ( 446) 1235 308.1 3.1e-83
NP_817124 (OMIM: 616768,616780) tubulin beta-8 cha ( 444) 1220 304.4 3.9e-82
NP_001280141 (OMIM: 156610,191130,615771) tubulin  ( 464) 1201 299.8 9.8e-81
NP_110400 (OMIM: 612901,613112) tubulin beta-1 cha ( 451) 1186 296.2 1.2e-79
NP_001280143 (OMIM: 156610,191130,615771) tubulin  ( 400) 1139 284.8 2.9e-76
XP_016883574 (OMIM: 612901,613112) PREDICTED: tubu ( 429) 1103 276.1 1.3e-73
NP_001280145 (OMIM: 156610,191130,615771) tubulin  ( 372) 1058 265.1 2.2e-70
NP_001280144 (OMIM: 156610,191130,615771) tubulin  ( 372) 1058 265.1 2.2e-70
NP_001290456 (OMIM: 615103) tubulin beta-6 chain i ( 374) 1057 264.9 2.7e-70
NP_001184110 (OMIM: 600638,602661,614039) tubulin  ( 378) 1053 263.9 5.3e-70
NP_001276060 (OMIM: 602662) tubulin beta-4A chain  ( 372) 1045 261.9   2e-69
NP_001276059 (OMIM: 602662) tubulin beta-4A chain  ( 372) 1045 261.9   2e-69
XP_011517761 (OMIM: 616768,616780) PREDICTED: tubu ( 372) 1034 259.3 1.3e-68
NP_001290457 (OMIM: 615103) tubulin beta-6 chain i ( 381)  997 250.3 6.5e-66
NP_001297244 (OMIM: 615101,615763) tubulin beta-2A ( 360)  989 248.4 2.4e-65
NP_001290455 (OMIM: 615103) tubulin beta-6 chain i ( 409)  984 247.2 6.1e-65
XP_016871681 (OMIM: 616768,616780) PREDICTED: tubu ( 332)  900 226.8   7e-59
XP_016871682 (OMIM: 616768,616780) PREDICTED: tubu ( 332)  900 226.8   7e-59
NP_001061 (OMIM: 191135,615412) tubulin gamma-1 ch ( 451)  799 202.4 2.1e-51
NP_057521 (OMIM: 605785) tubulin gamma-2 chain iso ( 451)  792 200.7 6.8e-51
NP_001290458 (OMIM: 615103) tubulin beta-6 chain i ( 300)  779 197.4 4.4e-50
NP_001290459 (OMIM: 615103) tubulin beta-6 chain i ( 300)  779 197.4 4.4e-50
XP_011517762 (OMIM: 616768,616780) PREDICTED: tubu ( 291)  726 184.5 3.2e-46
NP_001307438 (OMIM: 605785) tubulin gamma-2 chain  ( 460)  534 138.1 4.7e-32
NP_057346 (OMIM: 607345) tubulin epsilon chain [Ho ( 475)  456 119.2 2.4e-26
XP_011522916 (OMIM: 605785) PREDICTED: tubulin gam ( 298)  433 113.5 7.8e-25
XP_016879942 (OMIM: 605785) PREDICTED: tubulin gam ( 298)  433 113.5 7.8e-25
XP_016879944 (OMIM: 605785) PREDICTED: tubulin gam ( 274)  410 107.9 3.5e-23
XP_016879946 (OMIM: 605785) PREDICTED: tubulin gam ( 274)  410 107.9 3.5e-23
XP_016879943 (OMIM: 605785) PREDICTED: tubulin gam ( 274)  410 107.9 3.5e-23


>>NP_061816 (OMIM: 605742,613180) tubulin alpha-8 chain   (449 aa)
 initn: 3014 init1: 3014 opt: 3014  Z-score: 3946.3  bits: 739.4 E(85289): 4.5e-213
Smith-Waterman score: 3014; 100.0% identity (100.0% similar) in 449 aa overlap (1-449:1-449)

               10        20        30        40        50        60
pF1KB8 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
              370       380       390       400       410       420

              430       440         
pF1KB8 AREDLAALEKDYEEVGTDSFEEENEGEEF
       :::::::::::::::::::::::::::::
NP_061 AREDLAALEKDYEEVGTDSFEEENEGEEF
              430       440         

>>NP_005991 (OMIM: 191110,616208) tubulin alpha-4A chain  (448 aa)
 initn: 2782 init1: 2782 opt: 2782  Z-score: 3642.3  bits: 683.1 E(85289): 3.9e-196
Smith-Waterman score: 2782; 90.0% identity (96.4% similar) in 448 aa overlap (1-448:1-448)

               10        20        30        40        50        60
pF1KB8 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
       :::::::::::::::.:::::::.::::::: :: . .. .  . :::::::: ::: ::
NP_005 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
       ::::::..::::::.::.: : :::::::::::::::::::::::::::.::: :: :::
NP_005 HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
       :::::.: :.::::::.:::::::::::::::::::::.::::::::::.::::::::::
NP_005 RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
       :::::::::::::::::::::::::::::.::::.:::::::::::::::::..:::: .
NP_005 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
       ::::::::::::::::.::::::::::::.:::::::::.::::::::::::::::::::
NP_005 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
              370       380       390       400       410       420

              430       440         
pF1KB8 AREDLAALEKDYEEVGTDSFEEENEGEEF
       ::::.::::::::::: ::.:.:.:::: 
NP_005 AREDMAALEKDYEEVGIDSYEDEDEGEE 
              430       440         

>>NP_005992 (OMIM: 602528) tubulin alpha-3C/D chain [Hom  (450 aa)
 initn: 2768 init1: 2768 opt: 2781  Z-score: 3641.0  bits: 682.9 E(85289): 4.6e-196
Smith-Waterman score: 2781; 90.7% identity (96.9% similar) in 450 aa overlap (1-449:1-450)

               10        20        30        40        50        60
pF1KB8 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
       ::::::.::::::::::::::::.::::::: :: . .. .  . ::::.::::::: ::
NP_005 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
       ::::::..:::::::::::.:::::::::::::::::::::::::::::.::: .:::::
NP_005 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
       :::::.: :.:::::::::::::::::::.::::::::.:::::::::::::::::::::
NP_005 RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_005 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
       :::::::::::::::::::::::::::::.::::.:::::::::::::::::..:::: .
NP_005 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
       :::::::::::::::::::::::::::::.:::.::::::::::::::::::::::::::
NP_005 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
              370       380       390       400       410       420

              430       440          
pF1KB8 AREDLAALEKDYEEVGTDSFEEE-NEGEEF
       ::::::::::::::::.:: : : .::::.
NP_005 AREDLAALEKDYEEVGVDSVEAEAEEGEEY
              430       440       450

>>NP_006073 (OMIM: 602530) tubulin alpha-1B chain [Homo   (451 aa)
 initn: 2767 init1: 2767 opt: 2774  Z-score: 3631.8  bits: 681.2 E(85289): 1.5e-195
Smith-Waterman score: 2774; 89.8% identity (96.7% similar) in 451 aa overlap (1-449:1-451)

               10        20        30        40        50        60
pF1KB8 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
       ::::::.::::::::::::::::.::::::: :: . .. .  . ::::.::::::: ::
NP_006 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
       ::::::..::::::.::::.:::::::::::::::::::::::::::::.::: ::::::
NP_006 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
       :::::.: :.::::::.:::::::::::::::::::::.::::::::::.::::::::::
NP_006 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
       :::::::::::::::::::::::::::::.::::.:::::::::::::::::..:::: .
NP_006 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
       ::::::::::::::::.::::::::::::.:::.:::::.::::::::::::::::::::
NP_006 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
              370       380       390       400       410       420

              430       440           
pF1KB8 AREDLAALEKDYEEVGTDSFEEENE--GEEF
       ::::.:::::::::::.:: : :.:  :::.
NP_006 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
              430       440       450 

>>NP_001257328 (OMIM: 602529,611603) tubulin alpha-1A ch  (451 aa)
 initn: 2765 init1: 2765 opt: 2772  Z-score: 3629.2  bits: 680.7 E(85289): 2.1e-195
Smith-Waterman score: 2772; 89.8% identity (96.7% similar) in 451 aa overlap (1-449:1-451)

               10        20        30        40        50        60
pF1KB8 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
       ::::::.::::::::::::::::.::::::: :: . .. .  . ::::.::::::: ::
NP_001 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
       ::::::..::::::.::::.:::::::::::::::::::::::::::::.::: ::::::
NP_001 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
       :::::.: :.::::::.:::::::::::::::::::::.::::::::::.::::::::::
NP_001 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_001 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
       :::::::::::::::::::::::::::::.::::.:::::::::::::::::..:::: .
NP_001 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
       ::::::::::::::::.::::::::::::.:::.::::::::::::::::::::::::::
NP_001 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
              370       380       390       400       410       420

              430       440           
pF1KB8 AREDLAALEKDYEEVGTDSFEEENE--GEEF
       ::::.:::::::::::.:: : :.:  :::.
NP_001 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
              430       440       450 

>>NP_006000 (OMIM: 602529,611603) tubulin alpha-1A chain  (451 aa)
 initn: 2765 init1: 2765 opt: 2772  Z-score: 3629.2  bits: 680.7 E(85289): 2.1e-195
Smith-Waterman score: 2772; 89.8% identity (96.7% similar) in 451 aa overlap (1-449:1-451)

               10        20        30        40        50        60
pF1KB8 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
       ::::::.::::::::::::::::.::::::: :: . .. .  . ::::.::::::: ::
NP_006 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
       ::::::..::::::.::::.:::::::::::::::::::::::::::::.::: ::::::
NP_006 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
       :::::.: :.::::::.:::::::::::::::::::::.::::::::::.::::::::::
NP_006 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_006 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
       :::::::::::::::::::::::::::::.::::.:::::::::::::::::..:::: .
NP_006 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
       ::::::::::::::::.::::::::::::.:::.::::::::::::::::::::::::::
NP_006 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
              370       380       390       400       410       420

              430       440           
pF1KB8 AREDLAALEKDYEEVGTDSFEEENE--GEEF
       ::::.:::::::::::.:: : :.:  :::.
NP_006 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
              430       440       450 

>>NP_001265481 (OMIM: 191110,616208) tubulin alpha-4A ch  (433 aa)
 initn: 2679 init1: 2679 opt: 2679  Z-score: 3507.5  bits: 658.2 E(85289): 1.2e-188
Smith-Waterman score: 2679; 89.6% identity (96.3% similar) in 433 aa overlap (16-448:1-433)

               10        20        30        40        50        60
pF1KB8 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
                      .:::::::.::::::: :: . .. .  . :::::::: ::: ::
NP_001                MGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK
                              10        20        30        40     

               70        80        90       100       110       120
pF1KB8 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
       ::::::..::::::.::.: : :::::::::::::::::::::::::::.::: :: :::
NP_001 HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD
          50        60        70        80        90       100     

              130       140       150       160       170       180
pF1KB8 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
       :::::.: :.::::::.:::::::::::::::::::::.::::::::::.::::::::::
NP_001 RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
         110       120       130       140       150       160     

              190       200       210       220       230       240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
         170       180       190       200       210       220     

              250       260       270       280       290       300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
       :::::::::::::::::::::::::::::.::::.:::::::::::::::::..:::: .
NP_001 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
         230       240       250       260       270       280     

              310       320       330       340       350       360
pF1KB8 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
       ::::::::::::::::.::::::::::::.:::::::::.::::::::::::::::::::
NP_001 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP
         290       300       310       320       330       340     

              370       380       390       400       410       420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
         350       360       370       380       390       400     

              430       440         
pF1KB8 AREDLAALEKDYEEVGTDSFEEENEGEEF
       ::::.::::::::::: ::.:.:.:::: 
NP_001 AREDMAALEKDYEEVGIDSYEDEDEGEE 
         410       420       430    

>>NP_001180343 (OMIM: 605742,613180) tubulin alpha-8 cha  (383 aa)
 initn: 2553 init1: 2553 opt: 2553  Z-score: 3343.2  bits: 627.6 E(85289): 1.8e-179
Smith-Waterman score: 2553; 100.0% identity (100.0% similar) in 383 aa overlap (67-449:1-383)

         40        50        60        70        80        90      
pF1KB8 DAQASKINDDDSFTTFFSETGNGKHVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGK
                                     ::::::::::::::::::::::::::::::
NP_001                               MIDLEPTVVDEVRAGTYRQLFHPEQLITGK
                                             10        20        30

        100       110       120       130       140       150      
pF1KB8 EDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMER
               40        50        60        70        80        90

        160       170       180       190       200       210      
pF1KB8 LSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRN
              100       110       120       130       140       150

        220       230       240       250       260       270      
pF1KB8 LDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPII
              160       170       180       190       200       210

        280       290       300       310       320       330      
pF1KB8 SAEKAYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAEKAYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIK
              220       230       240       250       260       270

        340       350       360       370       380       390      
pF1KB8 TKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFD
              280       290       300       310       320       330

        400       410       420       430       440         
pF1KB8 LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGTDSFEEENEGEEF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGTDSFEEENEGEEF
              340       350       360       370       380   

>>NP_001257329 (OMIM: 602529,611603) tubulin alpha-1A ch  (416 aa)
 initn: 2534 init1: 2534 opt: 2541  Z-score: 3327.0  bits: 624.7 E(85289): 1.4e-178
Smith-Waterman score: 2541; 92.1% identity (98.0% similar) in 406 aa overlap (46-449:11-416)

          20        30        40        50        60        70     
pF1KB8 IGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGKHVPRAVMIDLEPTVV
                                     ::::.::::::: ::::::::..::::::.
NP_001                     MPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVI
                                   10        20        30        40

          80        90       100       110       120       130     
pF1KB8 DEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGF
       ::::.:::::::::::::::::::::::::::::.::: :::::::::::.: :.:::::
NP_001 DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGF
               50        60        70        80        90       100

         140       150       160       170       180       190     
pF1KB8 LIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTL
       :.:::::::::::::::::::::.::::::::::.:::::::::::::::::::::::::
NP_001 LVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTL
              110       120       130       140       150       160

         200       210       220       230       240       250     
pF1KB8 EHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEF
       ::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::
NP_001 EHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEF
              170       180       190       200       210       220

         260       270       280       290       300       310     
pF1KB8 QTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMAC
       ::::::::::::::.::::.:::::::::::::::::..:::: .:::::::::::::::
NP_001 QTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMAC
              230       240       250       260       270       280

         320       330       340       350       360       370     
pF1KB8 CMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV
       :.::::::::::::.:::.:::::::::::::::::::::::::::::::::::::::::
NP_001 CLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAV
              290       300       310       320       330       340

         380       390       400       410       420       430     
pF1KB8 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV
       :::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
NP_001 CMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEV
              350       360       370       380       390       400

         440           
pF1KB8 GTDSFEEENE--GEEF
       :.:: : :.:  :::.
NP_001 GVDSVEGEGEEEGEEY
              410      

>>XP_016860313 (OMIM: 191110,616208) PREDICTED: tubulin   (295 aa)
 initn: 1905 init1: 1905 opt: 1905  Z-score: 2495.7  bits: 470.4 E(85289): 2.8e-132
Smith-Waterman score: 1905; 94.6% identity (99.3% similar) in 295 aa overlap (154-448:1-295)

           130       140       150       160       170       180   
pF1KB8 KLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVE
                                     :::::.::::::::::.:::::::::::::
XP_016                               MERLSVDYGKKSKLEFSIYPAPQVSTAVVE
                                             10        20        30

           190       200       210       220       230       240   
pF1KB8 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLR
               40        50        60        70        80        90

           250       260       270       280       290       300   
pF1KB8 FDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQMV
       ::::::::::::::::::::::::::.::::.:::::::::::::::::..:::: .:::
XP_016 FDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMV
              100       110       120       130       140       150

           310       320       330       340       350       360   
pF1KB8 KCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVV
       :::::::::::::.::::::::::::.:::::::::.:::::::::::::::::::::::
XP_016 KCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVV
              160       170       180       190       200       210

           370       380       390       400       410       420   
pF1KB8 PGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARE
              220       230       240       250       260       270

           430       440         
pF1KB8 DLAALEKDYEEVGTDSFEEENEGEEF
       :.::::::::::: ::.:.:.:::: 
XP_016 DMAALEKDYEEVGIDSYEDEDEGEE 
              280       290      




449 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:11:55 2016 done: Fri Nov  4 13:11:56 2016
 Total Scan time:  6.580 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]
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