GENSCAN 1.0	Date run:  4-Nov-116	Time: 13:06:56

Sequence gi568815576f:45068178_45284652 : 216475 bp : 48.89% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   1151   1234   84  1  0   68  115    62 0.804   7.72
 1.02 Term +  12071  12343  273  1  0   58   37  1025 0.999  89.87
 1.03 PlyA +  14579  14584    6                               1.05

 2.05 PlyA -  14982  14977    6                               1.05
 2.04 Term -  15768  15677   92  1  2   69   51    85 0.161   0.78
 2.03 Intr -  40277  40219   59  1  2   95   85    83 0.748   7.23
 2.02 Intr -  41200  41067  134  1  2   82   90    49 0.698   3.94
 2.01 Init -  58139  58041   99  2  0   83   42    59 0.094   1.06
 2.00 Prom -  69849  69810   40                              -5.56

 3.03 PlyA -  72014  72009    6                               1.05
 3.02 Term -  73292  73273   20  0  2  125   36    33 0.934   0.28
 3.01 Init -  74382  74244  139  0  1   24   94   123 0.871   4.80
 3.00 Prom -  77952  77913   40                              -4.36

 4.00 Prom +  86019  86058   40                              -2.96
 4.01 Init +  91969  91988   20  0  2   98  103     6 0.506   1.74
 4.02 Intr +  95435  95626  192  2  0   28   63   173 0.386   7.41
 4.03 Intr +  95918  96119  202  2  1   47   78   173 0.349  11.49
 4.04 Intr + 103423 103506   84  0  0   98   81    49 0.973   5.22
 4.05 Intr + 107717 107903  187  1  1   79  111   118 0.741  12.46
 4.06 Intr + 110061 110723  663  1  0   60  115   271 0.987  18.74
 4.07 Intr + 113109 113190   82  1  1   36   69   104 0.998   2.00
 4.08 Intr + 115225 115343  119  1  2  112   80    67 0.991   8.41
 4.09 Term + 116276 116478  203  0  2   60   47   241 0.856  14.75
 4.10 PlyA + 116622 116627    6                               1.05

 5.00 Prom + 117222 117261   40                              -6.06
 5.01 Init + 117568 117613   46  0  1   93   93    28 0.758   4.65
 5.02 Term + 123117 123403  287  1  2   19   38   200 0.773   3.67
 5.03 PlyA + 124199 124204    6                               1.05

 6.22 PlyA - 126458 126453    6                               1.05
 6.21 Term - 128470 128254  217  0  1   75   55   188 0.931  10.82
 6.20 Intr - 129460 129361  100  2  1   61   89   -23 0.901  -5.73
 6.19 Intr - 129771 129613  159  1  0   88   95   131 0.950  13.76
 6.18 Intr - 131858 131696  163  2  1   99   45   277 0.978  24.05
 6.17 Intr - 135007 134813  195  1  0   99   90   305 0.996  31.41
 6.16 Intr - 135808 135668  141  1  0   87  100   307 0.998  32.35
 6.15 Intr - 137141 137040  102  2  0   89   83   188 0.999  18.77
 6.14 Intr - 137530 137453   78  1  0  119   99    62 0.997  10.15
 6.13 Intr - 137735 137616  120  2  0  103   86   215 0.999  23.49
 6.12 Intr - 143930 143779  152  0  2  121  113   269 0.915  32.58
 6.11 Intr - 144426 144335   92  2  2   88   77    30 0.457   1.54
 6.10 Intr - 149762 149477  286  0  1   73   55    81 0.014  -0.30
 6.09 Intr - 155713 155390  324  2  0   60   21   211 0.005   7.35
 6.08 Intr - 158206 158134   73  1  1  117   49    67 0.038   4.68
 6.07 Intr - 164850 164774   77  1  2   69   35    80 0.008   0.03
 6.06 Intr - 172648 172463  186  2  0  -20  109   190 0.872   9.96
 6.05 Intr - 174534 174499   36  1  0   97   66    33 0.421   0.23
 6.04 Intr - 183144 183060   85  0  1   54  105    35 0.036   1.19
 6.03 Intr - 183368 183235  134  0  2   48   64    73 0.027   1.26
 6.02 Intr - 186830 186611  220  2  1   60   57   131 0.216   5.07
 6.01 Init - 188219 188169   51  2  0   47  110    62 0.945   5.46
 6.00 Prom - 191237 191198   40                              -5.56

 7.00 Prom + 192672 192711   40                              -9.36
 7.01 Init + 194778 194872   95  2  2   60   35   121 0.432   1.95
 7.02 Intr + 194896 195116  221  1  2   34   89   102 0.361   2.85
 7.03 Intr + 200242 200262   21  2  0  140   81     2 0.790   2.22
 7.04 Intr + 200513 200689  177  0  0   98   53    98 0.480   7.19
 7.05 Intr + 207393 207659  267  1  0   80   47   149 0.253   7.50
 7.06 Term + 211890 211894    5  1  2  127   52     0 0.373  -2.63
 7.07 PlyA + 213235 213240    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 100001 100069   69  1  0   99   83    86 0.955  10.25
S.002 Intr + 157831 157937  107  2  2   72   82    71 0.838   4.83


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815576f:45068178_45284652|GENSCAN_predicted_peptide_1|118_aa
MIQEYAGIPAKELAKVWDLCSAIQALCMTQTITIIIITIIIIIIITILITITIIITIITI
IIIIIITIIIITIIIITIITIIITVITIITIIIIIIIIIIIITIIIITIIIIIITIMK

>gi568815576f:45068178_45284652|GENSCAN_predicted_CDS_1|357_bp
atgattcaggaatatgctggaatacctgcaaaggagctggcaaaggtatgggacctgtgc
tcagctatccaggcactttgcatgacccaaaccatcaccatcatcatcatcaccatcatc
atcatcatcatcatcaccatcctcatcaccatcaccatcatcatcaccatcatcaccatc
atcatcatcattatcatcaccatcatcatcatcaccatcatcatcatcaccatcatcacc
atcatcatcaccgtcatcaccatcatcaccatcatcatcatcatcatcatcatcatcatc
atcatcaccatcatcatcatcaccatcatcatcatcatcataacaataatgaaataa

>gi568815576f:45068178_45284652|GENSCAN_predicted_peptide_2|127_aa
MAEGKKEQVTSHVDGSRQRVCAGKLCLRKPSDLGPAELLALGSAVGLSPIFLHGNVHVVL
TLMGYHQVSQEAPTPTHGRTTVINHNKLMSDDDKHHKVMENKERGITVKVLKSIALGIAV
DFRASTV

>gi568815576f:45068178_45284652|GENSCAN_predicted_CDS_2|384_bp
atggcagaaggcaagaaggagcaagtcacatctcacgtggatggcagcaggcaaagagtt
tgtgcagggaaactctgccttaggaagccgtcggatcttggacctgcggagcttctggct
cttggatcagctgtaggactttcaccaatatttctgcatgggaatgtccatgtggtcttg
acactaatgggataccatcaagtatcccaggaagcacccacacccacccacgggagaacc
acagtcatcaatcataacaagctcatgtcagacgatgataagcatcacaaagtcatggag
aataaagagcgaggcatcactgtcaaagttttgaagagcattgctttgggtattgctgtt
gactttcgtgcttctaccgtgtga

>gi568815576f:45068178_45284652|GENSCAN_predicted_peptide_3|52_aa
MRARARARVCVCVCVCVCENLACIFVFVVLPQTNMGSVFHVIPTQAEVTAVK

>gi568815576f:45068178_45284652|GENSCAN_predicted_CDS_3|159_bp
atgcgcgcgcgcgcgcgcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaaat
ctggcttgtatttttgtatttgtcgtgctgccccaaaccaatatgggcagcgtcttccat
gtgatacccacccaggcagaggtaactgctgtcaagtaa

>gi568815576f:45068178_45284652|GENSCAN_predicted_peptide_4|583_aa
MDSFGISPAAPTRGHRGPRPCPLTDLPRRNSSRIAGPSAATSARTSWKTRCRPHVSRRPK
ARLLAPATRSSVRSPPRDMVFESLGLPSTKSSEFRSAAPEAAERAQPGDPCGLQTPAPLR
PGFRRNQDPASAAAAAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKGFKGLV
VPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFASAKAAADPKVAFGSLAANGPTTLV
DKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQLAALNCSVRDWIVKHVNTNPLCDLTP
IFKDYEKYLANIEQQHGNSGRNSESESNKVAAETQSPSLFGSTKLQQESTFLFHGNKTED
TPDKKMEVASEKKTDPSSLGATSASFNFGKKVDSSVLGSLSSVPLTGFSFSPGNSSLFGK
DTTQSKPVSSPFPTKPLEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYSKKCKL
FYKKDNEFKEKGIGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNVL
IVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKDA

>gi568815576f:45068178_45284652|GENSCAN_predicted_CDS_4|1752_bp
atggactcatttggaatcagccctgcagctcccacacgcggacaccgcgggcctcggcca
tgtccactgaccgaccttcctcgccggaactcctcgcgcatcgccggcccctcagcggcg
actagcgcgcgaacatcctggaagacgcgttgccggccccacgtgagccgacgccccaaa
gcgcggctgctggcgccggctacgagatcaagcgtgaggagcccccccagggatatggtg
tttgagtctctgggcttgccgagcactaagtcctctgagttccgcagcgcagcaccggaa
gcggccgagcgcgctcagcccggcgacccctgcgggctccagacccctgcgccgctgcgc
cccgggtttcgccgcaaccaagacccagcgagtgcagcggcggccgccgaggaggtggga
acattctccatggccagtgaggaagtcttgaagaatagagccataaagaaagcaaagcgc
agaaatgttggatttgaatctgacactggaggagcctttaaaggttttaaaggtttggtg
gtaccttctggaggaggacgcttttctggatttggtagtggcgctggagggaagcctttg
gaaggactgtcgaatggaaacaacataaccagtgcccctcccttcgccagtgcaaaggca
gcggcagatcccaaggtagcctttggttctcttgctgcaaatggccctaccaccttggtt
gataaagtttcaaatcccaaaactaatggggacagtcagcagccctcctcctctggcctt
gcttccagtaaagcttgtgtcggaaatgcctatcacaagcagttggccgccttgaactgc
tccgtgcgggattggatagtgaagcacgtgaatacaaaccccctctgtgatctgacacct
atctttaaagactatgagaaatatttagcaaacattgaacagcaacacgggaacagtggc
aggaattctgaaagtgaatctaacaaagtggcagctgaaacacagtctccttcccttttt
ggctcaacaaaattacagcaagagtcaacgtttttgtttcatggcaacaaaactgaagat
acacctgacaagaagatggaggtggcatctgaaaagaaaacggacccatcatcactagga
gcgacaagtgcctcatttaatttcggcaagaaagttgatagctctgttttgggctcatta
agctctgtccccctgactggattttctttctcccctggaaactccagtttatttggcaaa
gatactacccagagtaaaccagtctcttcaccatttcccactaaaccattggagggccaa
gcagaaggtgacagtggtgaatgcaaaggtggagatgaagaagagaatgatgagccaccc
aaagtagtagttaccgaagtaaaagaagaagatgctttttactccaaaaagtgtaaactg
ttttacaagaaagacaatgagtttaaagagaaaggcataggtactctgcatttaaaacct
acagcaaatcagaagacacagcttttggtgcgggcagacaccaatttaggcaacatattg
ctgaacgttctgattccacccaatatgccatgtacgcgaacagggaagaataacgttctt
atcgtctgtgttccaaatccaccaattgacgagaagaatgccaccatgccagtcaccatg
ttgattcgggtaaaaaccagcgaggatgcagacgagttgcacaaaattttactggagaaa
aaggatgcctga

>gi568815576f:45068178_45284652|GENSCAN_predicted_peptide_5|110_aa
MVIHTNIPVTSPEVSGKAHSVKGDDEAAPTYEGPAVADSEGSAGKCESLLEVPSPAELQD
RRLLQTPHLPLDQPAYLEPAKPELGAPGLYSIFSISVRVKRFSEKAWEIL

>gi568815576f:45068178_45284652|GENSCAN_predicted_CDS_5|333_bp
atggttattcacacgaatatccctgtcacttctccagaggtgtcaggaaaagctcacagt
gtgaaaggcgacgatgaggctgctcccacctacgagggccctgcagtagcagactcggaa
ggatcagccggaaaatgcgagagcctgctcgaggtcccctcacctgctgagctgcaagac
agacgcctgctgcaaacacctcatcttccgttagatcagccagcttacctggagcctgca
aaacctgaacttggggctcctggcctctattccattttttccatttctgtgagggttaag
aggttctctgaaaaagcctgggaaattttatag

>gi568815576f:45068178_45284652|GENSCAN_predicted_peptide_6|996_aa
MSSANNYMIWEKGSKSQTSTQDEGPKLYATMRHGLVHFVNRTAWPEGKKMSASSGSRISR
AVMGGCRQDILGFSRKTVPADSQPTLGEGPRLKVYTTAWGFQMCPNFPIQPLSVAPMMHH
CSIAHVGKGGTGWEQRLPRAQPPGFVALSKPLGISTPCKMLSKDRDAGPLEKRNTQADCG
FLGARGGLRAGPPALPAAAAPEPAGGAEAEERSLQHMLRAIAEERGRLSLRREVCGLATC
PWIHLSPNSMNLNVIDIDTWRGWDLMQRLGQSRPTELDTKPNPTSLPVLTLGAYLVLILG
AHLVLILGAHLVLILGAVSVLTLGAYLVLILGAVSVLTLGAHLVLFLGASLVLTLGAGLM
LTLGAGLVLTLGAYLVLILVAGSVLTLGAYLVLILVPGVTHLERALPVLEFEESDLQKQV
TRLRQGRQLDHQNSWQISVFLVQAIVIIHGFTYSLKFICNPKISTHGTFGLMTDIHAVSK
NSLPDTGFQLSLGWLEGGCPFKSGSRWDCRSQGEWVGVRDVGCFKDDRIVFWTWMFSTYF
MEKWAPRQDDMLFYVRRKLAYSGSESGADGRKAAEPEVEVEVYRRDSKKLPGLGDPDIDW
EESVCLNLILQKLDYMVTCAVCTRADGGDIHIHKKKSQQVFASPSKHPMDSKGEESKISY
PNIFFMIDSFEEVFSDMTVGEGEMVCVELVASDKTNTFQGVIFQGSIRYEALKKVYDNRV
SVAARMAQKMSFGFYKYSNMEFVRMKGPQGKGHAEMAVSRVSTGDTSPCGTEEDSSPASP
MHERVTSFSTPPTPERNNRPAFFSPSLKRKVPRNRIAEMKKSHSANDSEEFFREDDGGAD
LHNATNLRSRSLSGTGRSLVGSWLKLNRADGNFLLYAHLTYVTLPLHRILTDFGWSRSFP
RAEVLPLFTFLAHLLSPLEWPQMPRRWEHEKFDGFALGWEYLTHAQFQKGLQLSRRPRSR
QNGLLLPAKEHRQHAHLQPGTSHAGPRTEEPAEFGF

>gi568815576f:45068178_45284652|GENSCAN_predicted_CDS_6|2991_bp
atgagttctgccaacaactacatgatctgggaaaagggctccaagtctcagacttctact
caggatgaagggcccaagctctatgccacgatgaggcatggattggtgcacttcgtgaac
agaacagcatggccagaagggaagaaaatgtcagcaagcagcggcagcagaatcagcagg
gctgttatgggggggtgcagacaggacatattgggcttcagcaggaagacagtgcctgct
gacagccagcccaccctcggagagggcccacgattgaaggtctatacaacagcctggggc
ttccagatgtgcccaaactttcccatccagcccttatccgtggctcccatgatgcaccac
tgctccatcgcccacgtaggaaagggcggcactgggtgggaacagcgcttaccacgggca
caaccccctggcttcgtggccttgagtaagccactcggcatctccactccctgcaaaatg
ttgtcaaaagacagggatgcaggcccactggagaagagaaatacacaggcggactgtggc
ttccttggtgctcgcggcgggctgcgggccgggccgcccgccctccccgccgccgccgcc
cccgagcctgcgggcggcgccgaggccgaggagcgctcgctgcagcacatgctgcgtgcc
atagcggaggagcgcggccgtcttagcctgcgccgcgaggtctgcggcctcgccacctgt
ccttggatccacctgagccccaacagcatgaaccttaatgtcatcgacattgacacctgg
cgggggtgggacctcatgcagcgcctggggcagagcaggcccacagaactggatacgaag
cccaaccccacgagcttgccagtgctgaccctgggtgcttatctggtgctgatcctgggt
gctcatctggtgctgatcctgggtgctcatctggtgctgatcctgggtgctgtctcagtg
ctgaccctgggtgcttatctggtgctgatcctgggtgctgtctcagtgctgaccctgggt
gctcatctggtgctgttcctgggtgctagcttagtgctgaccctgggtgctggcttaatg
ctgaccctgggtgctggcttagtgctgaccttgggtgcttatctggtgctgatcctagtt
gctggctcagtgctgaccctgggtgcttatctggtgctgatcctagtccctggagtcact
cacctggaaagggctcttccagttctggagttcgaagagagtgacttacagaagcaggtc
actcgcttgaggcaggggagacagctggatcaccagaactcctggcaaatatcagttttc
ctggtccaggccattgtcattattcacggattcacctactcactgaaatttatttgtaac
cctaaaatcagtactcatggcactttcgggttaatgactgacattcatgcagtgtcgaaa
aattccttacctgacacaggtttccagctgagccttggctggctggagggcggctgtccc
tttaagtcgggttcccgctgggactgccgcagccagggggagtgggtgggggtgagagat
gttgggtgcttcaaggatgaccgcatcgtcttctggacttggatgttctccacctacttc
atggagaaatgggctccccggcaggacgacatgcttttctatgtgcgccggaagctggcg
tactccggcagcgaaagcggtgcagacgggaggaaggcagctgagcctgaggtggaggtg
gaggtgtaccggcgggactccaagaagctgccaggcctgggagaccctgacatcgactgg
gaggagagcgtctgcctgaatctcatcctgcagaagctggactacatggtgacctgtgcg
gtgtgcacacgtgctgacggcggggacattcacatccataagaagaaatctcagcaagtg
ttcgcgtcccccagtaaacaccccatggacagcaagggggaggagtccaagatcagctac
cccaacatcttcttcatgattgacagcttcgaggaggtgttcagcgacatgaccgtaggg
gaaggagagatggtctgtgtggagctggtggctagtgacaaaaccaacacgttccagggg
gtcatctttcagggctccatccgctacgaggcgctcaagaaggtgtatgacaaccgggtg
agcgtggccgcccgcatggcacagaagatgtcgtttggcttctacaagtacagcaacatg
gagtttgtgcgcatgaagggcccccagggcaagggccacgccgagatggcggtcagccga
gtgtctacaggtgacacatccccctgtgggactgaagaggactccagcccagcttcgccc
atgcacgagcgggtgacctccttcagcacaccccccaccccagaacggaacaaccggcct
gccttcttctccccatccctcaagaggaaggtgccccggaaccggatcgctgagatgaag
aagtcgcactcggccaacgacagcgaggagttcttccgggaggacgacggtggagccgat
ctgcacaatgcaaccaacctgcggtctcggtccctgtcgggcacaggacggtccctggtc
gggtcctggctgaagctgaacagagcagatggaaacttccttctctatgcacacttaacc
tacgtcacgttgccgctgcatcggattttaacagactttgggtggagccgtagctttccc
agagctgaagtcctccctttgttcacctttctggcgcacctgctgtcccctcttgagtgg
ccacagatgcccaggagatgggaacacgagaagtttgatggctttgccctgggctgggaa
tacctcacccacgcccagttccagaaaggcctccagctgagcagacggccccgatcccgc
cagaacggccttttgcttccagccaaagaacaccgccaacacgcacacctccaacctggg
acatcccacgctgggcctcgcacggaggaacctgcagaatttggattctga

>gi568815576f:45068178_45284652|GENSCAN_predicted_peptide_7|261_aa
MWDVGQDSSLLRGAGGPGLQLWFGRLQLHLGGLREHRDAWVHSRGLGSCSGMQGAATPTQ
NGRGSCLSPAPASSMEHAAPAVPPCCSWCDSSSRSRWPATATTETGPRTVPSAQESAVGL
LTASLLKGDSGSTGFCPLLMSLAAPGTQQCSLGFCCTFERKRSSVSPAAPGTAAPELAAA
LMLMPRKNQIAVYELLFKQGVMVAKEGVHLPRHPELADKNVPNLHIMKAMQSLKSQGHRE
EQFAWRHFYWHLTREGIQSIQ

>gi568815576f:45068178_45284652|GENSCAN_predicted_CDS_7|786_bp
atgtgggatgtggggcaggactccagcctgctccgtggagcgggaggccccggtctgcag
ctgtggtttgggcggctgcagctgcacctgggagggctccgagagcacagggatgcctgg
gtccacagccgtggcttgggcagctgcagcggcatgcagggagctgccaccccgactcag
aatgggagaggctcctgcctgtccccagctcctgccagttccatggaacatgcagcccca
gccgtgcctccctgctgcagctggtgtgacagcagcagccgctccagatggcctgccact
gccaccactgagacaggtccccgcacagtcccttctgcacaggagagcgccgtgggtttg
ctgaccgcgtccctgctgaaaggcgactccgggagcacaggcttctgccctctcctgatg
tccctagcagcgccgggcacgcagcagtgctcgctgggtttttgttgcacctttgagagg
aaaaggagctcggtgtcccctgcagcccctggaactgcggccccggaacttgcagctgca
ttgatgttgatgcctaggaagaaccagattgccgtttatgaactcctttttaagcaggga
gtcatggtggctaaggagggtgtccacctgcctaggcacccggagctggcagacaagaat
gtgcccaaccttcacatcatgaaggccatgcagtccctcaagtcccaaggccacagggag
gaacagtttgcctggagacatttctactggcaccttacccgtgagggtatccagagtatc
caatga