FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8441, 160 aa
  1>>>pF1KB8441 160 - 160 aa - 160 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4098+/-0.00031; mu= 17.3543+/- 0.019
 mean_var=58.8715+/-11.512, 0's: 0 Z-trim(116.5): 2  B-trim: 147 in 1/51
 Lambda= 0.167156
 statistics sampled from 27724 (27725) to 27724 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.325), width:  16
 Scan time:  5.030

The best scores are:                                      opt bits E(85289)
NP_001188 (OMIM: 603392) bcl-2-interacting killer  ( 160) 1045 259.5 1.6e-69


>>NP_001188 (OMIM: 603392) bcl-2-interacting killer [Hom  (160 aa)
 initn: 1045 init1: 1045 opt: 1045  Z-score: 1368.9  bits: 259.5 E(85289): 1.6e-69
Smith-Waterman score: 1045; 100.0% identity (100.0% similar) in 160 aa overlap (1-160:1-160)

               10        20        30        40        50        60
pF1KB8 MSEVRPLSRDILMETLLYEQLLEPPTMEVLGMTDSEEDLDPMEDFDSLECMEGSDALALR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSEVRPLSRDILMETLLYEQLLEPPTMEVLGMTDSEEDLDPMEDFDSLECMEGSDALALR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LACIGDEMDVSLRAPRLAQLSEVAMHSLGLAFIYDQTEDIRDVLRSFMDGFTTLKENIMR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LACIGDEMDVSLRAPRLAQLSEVAMHSLGLAFIYDQTEDIRDVLRSFMDGFTTLKENIMR
               70        80        90       100       110       120

              130       140       150       160
pF1KB8 FWRSPNPGSWVSCEQVLLALLLLLALLLPLLSGGLHLLLK
       ::::::::::::::::::::::::::::::::::::::::
NP_001 FWRSPNPGSWVSCEQVLLALLLLLALLLPLLSGGLHLLLK
              130       140       150       160




160 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:55:12 2016 done: Fri Nov  4 12:55:13 2016
 Total Scan time:  5.030 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]