GENSCAN 1.0	Date run:  4-Nov-116	Time: 12:48:47

Sequence gi568815597f:229186485_229402974 : 216490 bp : 43.46% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.04 PlyA -     73     68    6                               1.05
 1.03 Term -   2128   2064   65  2  2  125   43   121 0.920   9.35
 1.02 Intr -  11320  11214  107  0  2  101   67    46 0.501   3.66
 1.01 Init -  13010  12961   50  2  2   65   94    43 0.547   1.67
 1.00 Prom -  13389  13350   40                              -5.56

 2.02 PlyA -  17488  17483    6                               1.05
 2.01 Sngl -  18274  17927  348  1  0   51   53   184 0.609   7.25
 2.00 Prom -  23352  23313   40                              -0.36

 3.06 PlyA -  30710  30705    6                               1.05
 3.05 Term -  33245  33181   65  0  2   94   42    47 0.313  -1.25
 3.04 Intr -  35020  34967   54  2  0  118   84     8 0.493   2.35
 3.03 Intr -  39226  39131   96  2  0   63   93    27 0.409   0.68
 3.02 Intr -  43797  43666  132  1  0   73   65    41 0.521   0.92
 3.01 Init -  48002  47942   61  2  1   76   63    79 0.944   5.61
 3.00 Prom -  48725  48686   40                              -5.26

 4.04 PlyA -  48949  48944    6                               1.05
 4.03 Term -  58050  57898  153  0  0   52   47    94 0.007  -0.38
 4.02 Intr -  81949  81759  191  2  2   53   91    64 0.406   2.50
 4.01 Init -  84872  84476  397  2  1   93   75   188 0.444  12.87
 4.00 Prom -  87384  87345   40                              -2.36

 5.00 Prom +  95342  95381   40                              -6.06
 5.01 Init + 108924 109033  110  2  2   69   81   100 0.741   7.09
 5.02 Intr + 110998 111107  110  1  2   50  -21   151 0.010   0.33
 5.03 Intr + 112493 112588   96  0  0   95   98    42 0.015   5.88
 5.04 Intr + 124932 125047  116  1  2   25   84   113 0.003   4.77
 5.05 Intr + 139962 140024   63  2  0  104   28    77 0.028   2.21
 5.06 Intr + 140412 140449   38  2  2  106   68    11 0.052  -2.04
 5.07 Term + 143720 144011  292  2  1   75   43   210 0.113  10.02
 5.08 PlyA + 144411 144416    6                               1.05

 6.06 PlyA - 145308 145303    6                               1.05
 6.05 Term - 155007 154856  152  1  2  102   42    95 0.898   4.37
 6.04 Intr - 156029 155615  415  2  1   70   80   691 0.869  60.18
 6.03 Intr - 156314 156179  136  1  1   86   76   -17 0.511  -2.53
 6.02 Intr - 156561 156428  134  0  2   75   94    65 0.912   5.24
 6.01 Init - 158893 158795   99  1  0   63   64    61 0.559   1.46
 6.00 Prom - 167962 167923   40                              -5.56

 7.00 Prom + 179881 179920   40                              -2.86
 7.01 Init + 181737 181794   58  2  1   74   88    27 0.598   2.85
 7.02 Intr + 190201 190240   40  2  1  104  101     4 0.292   0.58
 7.03 Intr + 191013 191224  212  0  2  101   42    59 0.150   1.16
 7.04 Term + 192440 192558  119  0  2   73   44   124 0.213   5.20
 7.05 PlyA + 192606 192611    6                              -3.94

 8.03 PlyA - 192662 192657    6                               1.05
 8.02 Term - 194552 194437  116  0  2   73   51   152 0.942   8.73
 8.01 Intr - 211565 211407  159  0  0  132   57    -3 0.065   0.96

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 101902 101999   98  2  2   75   39   116 0.864   3.53
S.002 Term + 110998 111160  163  1  1   50   43   193 0.984   8.41
S.003 Term - 138927 138751  177  0  0   71   43   126 0.809   4.09
S.004 Init - 141807 141735   73  0  1   67   49    37 0.868  -1.07


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597f:229186485_229402974|GENSCAN_predicted_peptide_1|73_aa
MVLAGPVLAWHYCYVLRKPVKHNACCGSHLLQLTPPDPSFQLTPRSVKEAAPATQCEDDE
DEDFDDDLLPLNQ

>gi568815597f:229186485_229402974|GENSCAN_predicted_CDS_1|222_bp
atggtcctggctggaccagtccttgcttggcactactgctatgtcctcaggaaacctgtc
aagcacaatgcctgctgtgggagccaccttctccaactgacaccgcctgaccccagcttc
cagctcactccccgctctgtgaaggaagcagctccagctactcaatgtgaagacgatgag
gatgaagactttgatgatgatctgcttccacttaatcaatag

>gi568815597f:229186485_229402974|GENSCAN_predicted_peptide_2|115_aa
MSPVPQAADSVKFWLAHCLDGKQCVPHTTFVRSVTPTLVGPHCPGETYDVHMGNSESVFL
DKWSSALPEASTRKPPRHSLLQALSAVLLWTGGTLSTPEEHLSGTDTTLKPVAVY

>gi568815597f:229186485_229402974|GENSCAN_predicted_CDS_2|348_bp
atgtctccagttccccaggccgctgactcagtgaagttctggctggcacattgcttggat
ggaaaacagtgtgttccacatacaacctttgtaagaagtgtgacccccacgctggtgggg
ccccactgtcctggagaaacttatgacgttcacatgggcaattctgagtctgtgttcttg
gataagtggtcctccgctctgcccgaggccagcaccaggaagccacctcgccacagtctc
ctgcaggcactctctgctgtcctgttatggactggaggaaccctcagcacccctgaagag
catttgtctgggacagacaccaccctgaagccagttgctgtttattga

>gi568815597f:229186485_229402974|GENSCAN_predicted_peptide_3|135_aa
MGDENFRVLENALNNNCQRKACRSGQLGFRWSFGLHPLTAELQNPCSTLGLGFWLLEGFG
FDSGGAPPRTQIPQQEGTRALAHTPSIPDRLQHALPGECGVEEGGHEQEHGCRGVPDNHH
STLNLYEFDYSRYLM

>gi568815597f:229186485_229402974|GENSCAN_predicted_CDS_3|408_bp
atgggggatgaaaacttcagggtgctggaaaatgctcttaacaacaactgccagagaaaa
gcttgcagatctgggcagttgggttttcgctggagctttgggcttcacccactgactgca
gagctgcagaatccttgcagcacattggggcttgggttctggcttttggagggatttggc
tttgacagtggtggagctcctccccgcacccagatcccacagcaggagggcactagagcc
ttggcccacaccccatccatccccgacaggctgcagcatgccctgcctggtgagtgtggg
gtggaggagggtgggcatgagcaggaacatggctgtcgtggggtccctgacaaccaccat
tctactttgaatctctatgaatttgactactctaggtacctcatgtaa

>gi568815597f:229186485_229402974|GENSCAN_predicted_peptide_4|246_aa
MAVCDILGAAPPLAGSPAALARGPPARLGGEGPGAGDRRREGPDRSPRQPPVSQRLRPSR
TPAPRRRRALHPPSGRDREEEEEMGYARPGPPRVRACARGGRGGAREDFGARRKHVRGLG
ALAVCAEVGRAAGNIQSEWARLTAVMQISQPIYDLRSKVPRSDYLSTPTSRDLLMGPPRP
RLTECVLSKCISTITQCCEPLKGTEIVHSRSSDFKAVACQCSQLNKALPSTTWCLTGFVC
GSSCYN

>gi568815597f:229186485_229402974|GENSCAN_predicted_CDS_4|741_bp
atggccgtctgcgacatcttgggagcggcgccgcctctcgccgggtcaccggctgcactc
gcccgcggtccgccggcgcgtctcggtggggaaggacctggggcgggggaccggaggagg
gaggggcccgaccggtccccacggcaaccgccggtctcccagcggctgcggcccagccgg
actccagctccgcgcaggcgcagggccctccaccctccgtccggccgcgaccgcgaggag
gaagaggagatgggctacgcgaggcccggcccaccccgcgttcgcgcgtgcgcacgggga
ggccggggcggggcgcgtgaggacttcggcgcgcgccggaagcacgtgcgcgggctgggc
gctctggcggtgtgcgctgaggtgggcagagcggcagggaatattcagtcagaatgggct
agattaactgcagtaatgcagatctctcaacccatttatgacttacgcagcaaagttcct
cgctcagactacctgtccactcccacgagcagagacttgctcatgggccctcctagaccc
aggctgaccgagtgtgttttatctaaatgcatctccacaatcactcagtgttgtgagccc
ttaaaagggacagaaattgtgcactcgagaagctcggattttaaggcagtagcttgccaa
tgctcccagctgaataaagcccttccttctacaacttggtgtctgacaggttttgtctgc
ggctcgtcctgctacaattga

>gi568815597f:229186485_229402974|GENSCAN_predicted_peptide_5|274_aa
MDSCGDYGFHRAERWRELEEMEKIVPGSGVDEELAENRETYNALTNWLTDARMLASQNIV
IILCGNKKDLDADQLMFLETSALTGENVEEAFVQCARKILNKIESGLFHGWVTLHGKGIL
ELGFKETFSYVVIVESTDDKRGLSELVNPNSIYIFAWLGVTKLFWQIRHLVAVEAQYWCS
EWMVMLSSDIGPLKDEERVLVTLDARHSWSRQPDLQLELRREDGMEMKATAPGVDQVTQK
KHRAGRQEVQTGPGTPSFNAQAKKGEPEMGAEEG

>gi568815597f:229186485_229402974|GENSCAN_predicted_CDS_5|825_bp
atggattcctgtggtgactatggattccaccgcgccgagaggtggcgagaactggaagag
atggagaaaattgtgccagggagtggggtagatgaggagctcgcagagaaccgagaaacc
tacaatgcgcttactaattggttaacagatgcccgaatgctagcgagccagaacattgtg
atcatcctttgtggaaacaagaaggacctggatgcagatcagctgatgtttttggaaaca
agtgcgctcacaggggagaatgtagaagaggcttttgtacagtgtgcaagaaaaatactt
aacaaaatcgaatcaggtttgttccatggctgggtgacactacacggcaaaggaatactt
gagctgggcttcaaggaaacatttagctatgtggtcattgtagaaagcacagatgacaaa
cgggggctgagtgaacttgtgaaccccaactccatctacatctttgcctggcttggtgtc
actaaactcttctggcaaataaggcacttggttgctgtcgaggctcagtactggtgttct
gagtggatggtcatgctgtcctctgacataggccccctaaaggatgaggaaagggtgctt
gtcacgttggatgcaagacactcctggtcccggcagccagaccttcaactggagctcagg
agagaagatggcatggagatgaaagccacggctcctggtgtggaccaagtcacccagaag
aaacacagagccggaagacaggaggtgcaaacaggcccggggacaccgtcatttaatgca
caggcaaagaaaggagaacccgagatgggagcagaggaagggtag

>gi568815597f:229186485_229402974|GENSCAN_predicted_peptide_6|311_aa
MQQEMYMTLRCQSRLLEDVTKTAQPTAHPTASYLERGPPRRHLAQEESARESELRFSCCA
TRASGLGAEDRPGAAGRSPSLLRSPRPSPQPPCLPPTEQPSSAARPSTPAAPVPASALGP
GRRAAGSEERLALEAADGTMSPGSGVKSEYMKRYQEPRWEEYGPCYRELLHYRLGRRLLE
QAHAPWLWDDWGPAGSSEDSASSESSGAGGPAPRCAPPSPPPPVEPATQEEAERRARGAP
EEQDAEAGDAEAEDAEDAALPDPKAPVALRVFSRHGPFTFFPAQRLAGLGTQLNASVQPG
VTNGSFQITGF

>gi568815597f:229186485_229402974|GENSCAN_predicted_CDS_6|936_bp
atgcagcaggagatgtatatgaccttgagatgccagtccaggcttctggaggatgtgacc
aagacggcccagcccacagcccaccccactgccagttatctggagcgcgggccgccgcgg
cgacatcttgctcaggaggaaagcgcgcgggagagcgagctgcgctttagctgctgcgcc
acgcgcgcctcgggcctgggcgcagaggatcggccgggcgcggcgggaaggagccccagt
ctcctgcggtcccctcgccccagcccgcagcctccctgccttccgcccactgagcagccc
tcctcggcggcgcgcccctcgaccccagcagccccggtccccgcctctgctcttggtccc
ggccgccgggctgcgggcagcgaggagcggctggcgctcgaggcggcggacggcaccatg
tccccggggagcggggtgaagagcgagtacatgaagcgctaccaggagccgcgctgggag
gagtacgggccgtgctaccgcgagctgctgcactaccgcctaggccgccggctgctggag
caggcgcacgcgccctggctctgggacgactggggcccggccggctcctcggaggactcg
gcgtcgtcagagtcgtcgggcgccgggggccccgcaccccggtgcgccccgccctcgccc
ccgccgcccgtagagccggcgacccaggaggaggcggaacggcgggcgcgcggggccccg
gaggagcaggacgcggaggccggggacgcggaggccgaggacgcggaggacgcggctctg
ccagatccgaaagcgccggtggcgctgcgcgtgttttcaaggcatggccccttcaccttc
tttcctgcccagaggcttgcagggctggggacccagttgaacgcctcagtacagcctgga
gtaaccaatggttccttccagatcactggattttaa

>gi568815597f:229186485_229402974|GENSCAN_predicted_peptide_7|142_aa
MVPGSASGEGFRLLLFVVRGQKDKEEPPSRPLREKGSLSLTHGGALSGHLCTGPLQGQMR
QPEQNPLPAWPTKEPTTLHLAQPQPKAAPTRCAFRDLPGPLECESGITVIFPCHFKTYEY
MPPVATQQYIIEHKQYLTDPSC

>gi568815597f:229186485_229402974|GENSCAN_predicted_CDS_7|429_bp
atggtgccaggatctgcttctggggagggcttcaggctgctgctattcgtggtgagaggg
cagaaagataaagaggagcctccctccaggcctctgcgggagaagggaagtctctccctc
acccatgggggagcactgagtggccacctctgcacaggccctctgcaggggcagatgagg
cagcccgaacagaaccctctgcccgcctggccaaccaaagagcccacgacactccatctg
gcccaaccgcagccgaaggcggcaccaactcgctgcgccttcagggacttgccagggcca
cttgagtgtgaatctggcatcacagtcattttcccatgtcacttcaaaacctatgagtat
atgcctccagtggccacacagcagtacatcatagagcacaagcagtacctcacagaccca
tcatgctag

>gi568815597f:229186485_229402974|GENSCAN_predicted_peptide_8|91_aa
XVQFGEERSRISVLSPIADVISRELHFPQWRLHTSQLNPPRRLGCGILMKNAIAFGKEKS
LMQDAGGKAAAPAELAGRTLDANPGCSIDVL

>gi568815597f:229186485_229402974|GENSCAN_predicted_CDS_8|276_bp
naagtgcagtttggagaggaaagaagccgtatctcagtcctttcaccaatagctgatgta
atctcaagagagttgcatttcccacagtggagacttcacacatcacagctaaatcctcca
agacgactcggctgtggaatcctaatgaagaatgcaatagcattcggcaaagagaagtca
ctcatgcaggatgcgggcggcaaggcggcggcccctgcagagctagcaggcaggaccctg
gatgctaacccaggatgcagcattgatgtcctctga