Result of FASTA (ccds) for pF1KB8425
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8425, 688 aa
  1>>>pF1KB8425 688 - 688 aa - 688 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5774+/-0.000975; mu= 13.9734+/- 0.058
 mean_var=99.4171+/-20.187, 0's: 0 Z-trim(107.6): 34  B-trim: 335 in 1/50
 Lambda= 0.128630
 statistics sampled from 9692 (9709) to 9692 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.298), width:  16
 Scan time:  4.100

The best scores are:                                      opt bits E(32554)
CCDS1286.1 SCYL3 gene_id:57147|Hs108|chr1          ( 688) 4542 853.7       0
CCDS1287.1 SCYL3 gene_id:57147|Hs108|chr1          ( 742) 2827 535.5  1e-151
CCDS44646.1 SCYL1 gene_id:57410|Hs108|chr11        ( 791)  428 90.3 1.1e-17
CCDS41672.1 SCYL1 gene_id:57410|Hs108|chr11        ( 808)  428 90.3 1.2e-17


>>CCDS1286.1 SCYL3 gene_id:57147|Hs108|chr1               (688 aa)
 initn: 4542 init1: 4542 opt: 4542  Z-score: 4557.6  bits: 853.7 E(32554):    0
Smith-Waterman score: 4542; 99.7% identity (99.9% similar) in 688 aa overlap (1-688:1-688)

               10        20        30        40        50        60
pF1KB8 MGSENSALKSYTLREPPFTLPSGLAVYPAVLQDGKFASVFVYKRENEDKVNKAAKHLKTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MGSENSALKSYTLREPPFTLPSGLAVYPAVLQDGKFASVFVYKRENEDKVNKAAKHLKTL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RHPCLLRFLSCTVEADGIHLVTERVQPLEVALETLSSAEVCAGIYDILLALIFLHDRGHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RHPCLLRFLSCTVEADGIHLVTERVQPLEVALETLSSAEVCAGIYDILLALIFLHDRGHL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 THNNVCLSSVFVSEDEHWKLGGMETVCKVSQATPEFLRSIQSIRDPASIPPEEMSPEFTT
       ::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::
CCDS12 THNNVCLSSVFVSEDGHWKLGGMETVCKVSQATPEFLRSIQSIRDPASIPPEEMSPEFTT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LPECHGHARDAFSFGTLVESLLTILNEQVSADVLSSFQQTLHSTLLNPIPKCRPALCTLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LPECHGHARDAFSFGTLVESLLTILNEQVSADVLSSFQQTLHSTLLNPIPKCRPALCTLL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SHDFFRNDFLEVVNFLKSLTLKSEEEKTEFFKFLLDRVSCLSEELIASRLVPLLLNQLVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SHDFFRNDFLEVVNFLKSLTLKSEEEKTEFFKFLLDRVSCLSEELIASRLVPLLLNQLVF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 AEPVAVKSFLPYLLGPKKDHAQGETPCLLSPALFQSRVIPVLLQLFEVHEEHVRMVLLSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AEPVAVKSFLPYLLGPKKDHAQGETPCLLSPALFQSRVIPVLLQLFEVHEEHVRMVLLSH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 IEAYVEHFTQEQLKKVILPQVLLGLRDTSDSIVAITLHSLAVLVSLLGPEVVVGGERTKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IEAYVEHFTQEQLKKVILPQVLLGLRDTSDSIVAITLHSLAVLVSLLGPEVVVGGERTKI
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 FKRTAPSFTKNTDLSLEGDPFSQPIKFPINGLSDVKNTSEDSENFPSSSKKSEEWPDWSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FKRTAPSFTKNTDLSLEGDPFSQPIKFPINGLSDVKNTSEDSENFPSSSKKSEEWPDWSE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 PEEPENQTVNIQIWPREPCDDVKSQCTTLDVEESSWDDCEPSSLDTKVNPGGGITATKPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PEEPENQTVNIQIWPREPCDDVKSQCTTLDVEESSWDDCEPSSLDTKVNPGGGITATKPV
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 TSAEQKPIPALLSLTEESMPWKSSLPQKISLVQRGDDADQIEPPKVSSQERPLKVPSELG
       ::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TSGEQKPIPALLSLTEESMPWKSSLPQKISLVQRGDDADQIEPPKVSSQERPLKVPSELG
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB8 LGEEFTIQVKKKPVKDPEMDWFADMIPEIKPSAAFLILPELRTEMVPKKDDVSPVMQFSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LGEEFTIQVKKKPVKDPEMDWFADMIPEIKPSAAFLILPELRTEMVPKKDDVSPVMQFSS
              610       620       630       640       650       660

              670       680        
pF1KB8 KFAAAEITEGEAEGWEEEGELNWEDNNW
       ::::::::::::::::::::::::::::
CCDS12 KFAAAEITEGEAEGWEEEGELNWEDNNW
              670       680        

>>CCDS1287.1 SCYL3 gene_id:57147|Hs108|chr1               (742 aa)
 initn: 2827 init1: 2827 opt: 2827  Z-score: 2837.1  bits: 535.5 E(32554): 1e-151
Smith-Waterman score: 4258; 92.2% identity (92.4% similar) in 720 aa overlap (1-666:1-720)

               10        20        30        40        50        60
pF1KB8 MGSENSALKSYTLREPPFTLPSGLAVYPAVLQDGKFASVFVYKRENEDKVNKAAKHLKTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MGSENSALKSYTLREPPFTLPSGLAVYPAVLQDGKFASVFVYKRENEDKVNKAAKHLKTL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RHPCLLRFLSCTVEADGIHLVTERVQPLEVALETLSSAEVCAGIYDILLALIFLHDRGHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RHPCLLRFLSCTVEADGIHLVTERVQPLEVALETLSSAEVCAGIYDILLALIFLHDRGHL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 THNNVCLSSVFVSEDEHWKLGGMETVCKVSQATPEFLRSIQSIRDPASIPPEEMSPEFTT
       ::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::
CCDS12 THNNVCLSSVFVSEDGHWKLGGMETVCKVSQATPEFLRSIQSIRDPASIPPEEMSPEFTT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LPECHGHARDAFSFGTLVESLLTILNEQVSADVLSSFQQTLHSTLLNPIPKCRPALCTLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LPECHGHARDAFSFGTLVESLLTILNEQVSADVLSSFQQTLHSTLLNPIPKCRPALCTLL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SHDFFRNDFLEVVNFLKSLTLKSEEEKTEFFKFLLDRVSCLSEELIASRLVPLLLNQLVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SHDFFRNDFLEVVNFLKSLTLKSEEEKTEFFKFLLDRVSCLSEELIASRLVPLLLNQLVF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 AEPVAVKSFLPYLLGPKKDHAQGETPCLLSPALFQSRVIPVLLQLFEVHEEHVRMVLLSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AEPVAVKSFLPYLLGPKKDHAQGETPCLLSPALFQSRVIPVLLQLFEVHEEHVRMVLLSH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 IEAYVEHFTQEQLKKVILPQVLLGLRDTSDSIVAITLHSLAVLVSLLGPEVVVGGERTKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IEAYVEHFTQEQLKKVILPQVLLGLRDTSDSIVAITLHSLAVLVSLLGPEVVVGGERTKI
              370       380       390       400       410       420

              430                                                  
pF1KB8 FKRTAPSFTKNTDLSLE-------------------------------------------
       :::::::::::::::::                                           
CCDS12 FKRTAPSFTKNTDLSLEDSPMCVVCSHHSQISPILENPFSSIFPKCFFSGSTPINSKKHI
              430       440       450       460       470       480

                  440       450       460       470       480      
pF1KB8 -----------GDPFSQPIKFPINGLSDVKNTSEDSENFPSSSKKSEEWPDWSEPEEPEN
                  :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QRDYYNTLLQTGDPFSQPIKFPINGLSDVKNTSEDSENFPSSSKKSEEWPDWSEPEEPEN
              490       500       510       520       530       540

        490       500       510       520       530       540      
pF1KB8 QTVNIQIWPREPCDDVKSQCTTLDVEESSWDDCEPSSLDTKVNPGGGITATKPVTSAEQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS12 QTVNIQIWPREPCDDVKSQCTTLDVEESSWDDCEPSSLDTKVNPGGGITATKPVTSGEQK
              550       560       570       580       590       600

        550       560       570       580       590       600      
pF1KB8 PIPALLSLTEESMPWKSSLPQKISLVQRGDDADQIEPPKVSSQERPLKVPSELGLGEEFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PIPALLSLTEESMPWKSSLPQKISLVQRGDDADQIEPPKVSSQERPLKVPSELGLGEEFT
              610       620       630       640       650       660

        610       620       630       640       650       660      
pF1KB8 IQVKKKPVKDPEMDWFADMIPEIKPSAAFLILPELRTEMVPKKDDVSPVMQFSSKFAAAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IQVKKKPVKDPEMDWFADMIPEIKPSAAFLILPELRTEMVPKKDDVSPVMQFSSKFAAAE
              670       680       690       700       710       720

        670       680        
pF1KB8 ITEGEAEGWEEEGELNWEDNNW
                             
CCDS12 ITEGEAEGWEEEGELNWEDNNW
              730       740  

>>CCDS44646.1 SCYL1 gene_id:57410|Hs108|chr11             (791 aa)
 initn: 309 init1: 123 opt: 428  Z-score: 430.7  bits: 90.3 E(32554): 1.1e-17
Smith-Waterman score: 449; 28.1% identity (57.8% similar) in 431 aa overlap (15-423:19-434)

                   10         20        30         40            50
pF1KB8     MGSENSALKSYTLREPPFT-LPSGLAVYPAVLQ-DGKFASVFVYK----RENEDKV
                         :::   ::.  :.. .  .  :. .:.:::      :.. .:
CCDS44 MWFFARDPVRDFPFELIPEPPEGGLPGPWALHRGRKKATGSPVSIFVYDVKPGAEEQTQV
               10        20        30        40        50        60

                60        70        80        90             100   
pF1KB8 NKAA-KHLKTLRHPCLLRFLSCTVEADGIHLVTERVQPLEVALET------LSSAEVCAG
        ::: :..:::::: .: ...       .:.::: : :: . :..      :.  :.  :
CCDS44 AKAAFKRFKTLRHPNILAYIDGLETEKCLHVVTEAVTPLGIYLKARVEAGGLKELEISWG
               70        80        90       100       110       120

           110       120       130       140       150       160   
pF1KB8 IYDILLALIFLHDRGHLTHNNVCLSSVFVSEDEHWKLGGMETVCKVSQATPEFLRSIQSI
       ...:. :: :: .   : :::::...:::..  .:::::.. . ...       :  ..:
CCDS44 LHQIVKALSFLVNDCSLIHNNVCMAAVFVDRAGEWKLGGLDYMYSAQGNGGGPPR--KGI
              130       140       150       160       170          

           170       180       190        200       210       220  
pF1KB8 RDPASIPPEEMSPEFTTLPECHGHARDAFSFGTLV-ESLLTILNEQVSADVLSSFQQTL-
        .  .  : :..     . . .  : : . .: :. : .   : . ..    ... .:: 
CCDS44 PELEQYDPPELADSSGRVVREKWSA-DMWRLGCLIWEVFNGPLPRAAALRNPGKIPKTLV
      180       190       200        210       220       230       

               230       240            250       260       270    
pF1KB8 --HSTLLNPIPKCRPALCTLLSH-----DFFRNDFLEVVNFLKSLTLKSEEEKTEFFKFL
         .  :..  :: ::    .:..      :. : :.:.  ::. . .:   :: .::. :
CCDS44 PHYCELVGANPKVRPNPARFLQNCRAPGGFMSNRFVETNLFLEEIQIKEPAEKQKFFQEL
       240       250       260       270       280       290       

          280       290       300       310       320       330    
pF1KB8 LDRVSCLSEELIASRLVPLLLNQLVFAEPVAVKSFLPYLLGPKKDHAQGETPCLLSPALF
          .. . :..   ...: ::. . :..  ::      .: :      :.   .::   .
CCDS44 SKSLDAFPEDFCRHKVLPQLLTAFEFGNAGAV------VLTPL--FKVGK---FLSAEEY
       300       310       320             330            340      

          340       350       360       370       380       390    
pF1KB8 QSRVIPVLLQLFEVHEEHVRMVLLSHIEAYVEHFTQEQLKKVILPQVLLGLRDTSDSIVA
       :...:::....:   .. .:. ::...: ..... .  ..  :.:.:. :. ::. .:  
CCDS44 QQKIIPVVVKMFSSTDRAMRIRLLQQMEQFIQYLDEPTVNTQIFPHVVHGFLDTNPAIRE
        350       360       370       380       390       400      

          400       410       420       430       440       450    
pF1KB8 ITLHSLAVLVSLLGPEVVVGGERTKIFKRTAPSFTKNTDLSLEGDPFSQPIKFPINGLSD
        :..:. .:.  :. :. .. :  : : :                               
CCDS44 QTVKSMLLLAPKLN-EANLNVELMKHFARLQAKDEQGPIRCNTTVCLGKIGSYLSASTRH
        410       420        430       440       450       460     

>>CCDS41672.1 SCYL1 gene_id:57410|Hs108|chr11             (808 aa)
 initn: 309 init1: 123 opt: 428  Z-score: 430.5  bits: 90.3 E(32554): 1.2e-17
Smith-Waterman score: 449; 28.1% identity (57.8% similar) in 431 aa overlap (15-423:19-434)

                   10         20        30         40            50
pF1KB8     MGSENSALKSYTLREPPFT-LPSGLAVYPAVLQ-DGKFASVFVYK----RENEDKV
                         :::   ::.  :.. .  .  :. .:.:::      :.. .:
CCDS41 MWFFARDPVRDFPFELIPEPPEGGLPGPWALHRGRKKATGSPVSIFVYDVKPGAEEQTQV
               10        20        30        40        50        60

                60        70        80        90             100   
pF1KB8 NKAA-KHLKTLRHPCLLRFLSCTVEADGIHLVTERVQPLEVALET------LSSAEVCAG
        ::: :..:::::: .: ...       .:.::: : :: . :..      :.  :.  :
CCDS41 AKAAFKRFKTLRHPNILAYIDGLETEKCLHVVTEAVTPLGIYLKARVEAGGLKELEISWG
               70        80        90       100       110       120

           110       120       130       140       150       160   
pF1KB8 IYDILLALIFLHDRGHLTHNNVCLSSVFVSEDEHWKLGGMETVCKVSQATPEFLRSIQSI
       ...:. :: :: .   : :::::...:::..  .:::::.. . ...       :  ..:
CCDS41 LHQIVKALSFLVNDCSLIHNNVCMAAVFVDRAGEWKLGGLDYMYSAQGNGGGPPR--KGI
              130       140       150       160       170          

           170       180       190        200       210       220  
pF1KB8 RDPASIPPEEMSPEFTTLPECHGHARDAFSFGTLV-ESLLTILNEQVSADVLSSFQQTL-
        .  .  : :..     . . .  : : . .: :. : .   : . ..    ... .:: 
CCDS41 PELEQYDPPELADSSGRVVREKWSA-DMWRLGCLIWEVFNGPLPRAAALRNPGKIPKTLV
      180       190       200        210       220       230       

               230       240            250       260       270    
pF1KB8 --HSTLLNPIPKCRPALCTLLSH-----DFFRNDFLEVVNFLKSLTLKSEEEKTEFFKFL
         .  :..  :: ::    .:..      :. : :.:.  ::. . .:   :: .::. :
CCDS41 PHYCELVGANPKVRPNPARFLQNCRAPGGFMSNRFVETNLFLEEIQIKEPAEKQKFFQEL
       240       250       260       270       280       290       

          280       290       300       310       320       330    
pF1KB8 LDRVSCLSEELIASRLVPLLLNQLVFAEPVAVKSFLPYLLGPKKDHAQGETPCLLSPALF
          .. . :..   ...: ::. . :..  ::      .: :      :.   .::   .
CCDS41 SKSLDAFPEDFCRHKVLPQLLTAFEFGNAGAV------VLTPL--FKVGK---FLSAEEY
       300       310       320             330            340      

          340       350       360       370       380       390    
pF1KB8 QSRVIPVLLQLFEVHEEHVRMVLLSHIEAYVEHFTQEQLKKVILPQVLLGLRDTSDSIVA
       :...:::....:   .. .:. ::...: ..... .  ..  :.:.:. :. ::. .:  
CCDS41 QQKIIPVVVKMFSSTDRAMRIRLLQQMEQFIQYLDEPTVNTQIFPHVVHGFLDTNPAIRE
        350       360       370       380       390       400      

          400       410       420       430       440       450    
pF1KB8 ITLHSLAVLVSLLGPEVVVGGERTKIFKRTAPSFTKNTDLSLEGDPFSQPIKFPINGLSD
        :..:. .:.  :. :. .. :  : : :                               
CCDS41 QTVKSMLLLAPKLN-EANLNVELMKHFARLQAKDEQGPIRCNTTVCLGKIGSYLSASTRH
        410       420        430       440       450       460     




688 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:47:32 2016 done: Fri Nov  4 12:47:33 2016
 Total Scan time:  4.100 Total Display time:  0.080

Function used was FASTA [36.3.4 Apr, 2011]
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