GENSCAN 1.0	Date run:  4-Nov-116	Time: 12:41:06

Sequence gi568815593f:176922739_177164596 : 241858 bp : 46.47% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.09 PlyA -   2739   2734    6                               1.05
 1.08 Term -  17265  17078  188  1  2   93   42   107 0.960   4.25
 1.07 Intr -  20750  20597  154  2  1  103  103   117 0.975  14.35
 1.06 Intr -  42171  42022  150  0  0   72   68    79 0.819   4.66
 1.05 Intr -  46517  45817  701  0  2   44  110   322 0.618  21.20
 1.04 Intr -  48128  47982  147  0  0  112  -23   111 0.529   2.61
 1.03 Intr -  52742  52658   85  2  1   97   60    32 0.919   0.69
 1.02 Intr -  59885  59731  155  0  2   58   88   162 0.546  12.99
 1.01 Init -  70278  70230   49  0  1   86   58    53 0.753   1.22
 1.00 Prom -  71955  71916   40                               0.74

 2.03 PlyA -  76119  76114    6                               1.05
 2.02 Term -  83217  83011  207  0  0   85   48   110 0.599   4.04
 2.01 Init -  84091  83801  291  1  0   52  102   130 0.739   5.95
 2.00 Prom -  92144  92105   40                              -5.76

 3.00 Prom +  97185  97224   40                              -4.16
 3.01 Init + 100001 100159  159  1  0   95   80   203 0.973  18.98
 3.02 Intr + 100422 100496   75  2  0   90  119    50 0.969   8.01
 3.03 Term + 100969 101127  159  0  0  119   42    91 0.899   5.54
 3.04 PlyA + 108019 108024    6                               1.05

 4.00 Prom + 108115 108154   40                              -5.36
 4.01 Init + 117142 117211   70  0  1   74   98    36 0.919   2.41
 4.02 Intr + 118388 118491  104  0  2  105   85    80 0.993   9.29
 4.03 Intr + 119040 119132   93  2  0   88   90    55 0.980   5.86
 4.04 Intr + 121582 121795  214  0  1   51   79   210 0.802  14.69
 4.05 Intr + 127965 128198  234  1  0   84   94   184 0.605  16.26
 4.06 Intr + 139320 139413   94  1  1   65  100   101 0.706   8.02
 4.07 Intr + 142768 142871  104  1  2   91   51    73 0.165   3.72
 4.08 Intr + 166812 166955  144  1  0   64   52   141 0.164   8.35
 4.09 Intr + 167652 167915  264  1  0  124   83   181 0.921  18.68
 4.10 Intr + 168007 168087   81  2  0   46   86    54 0.576   0.61
 4.11 Intr + 168200 168366  167  0  2   52  100   268 0.941  24.08
 4.12 Intr + 168947 169070  124  1  1   77   80   178 0.963  16.06
 4.13 Intr + 169583 169773  191  0  2   77   93   398 0.999  38.50
 4.14 Intr + 169908 170046  139  2  1   71   99   219 0.778  21.34
 4.15 Intr + 170400 170593  194  1  2   -7   84   228 0.846  12.11
 4.16 Intr + 170668 170813  146  0  2   20   85    63 0.972  -1.72
 4.17 Intr + 170916 171037  122  0  2   91  113   133 0.875  16.24
 4.18 Intr + 172592 172702  111  0  0   96   81   228 0.776  23.25
 4.19 Intr + 172795 172985  191  2  2  125   87   249 0.988  27.80
 4.20 Intr + 173319 173441  123  2  0   76   64   218 0.841  18.98
 4.21 Term + 173549 173623   75  1  0  120   47    81 0.999   5.04
 4.22 PlyA + 173652 173657    6                              -5.32

 5.06 PlyA - 173726 173721    6                              -8.24
 5.05 Term - 173953 173809  145  0  1   54   48    83 0.696  -1.72
 5.04 Intr - 174400 174105  296  1  2  -44    5   903 0.682  64.61
 5.03 Intr - 175336 175267   70  0  1  105   48    96 0.604   6.48
 5.02 Intr - 194341 194180  162  0  0   60   40   162 0.133   7.69
 5.01 Init - 209655 209339  317  0  2   31  -38   345 0.026  11.01
 5.00 Prom - 212208 212169   40                             -11.63

 6.00 Prom + 212281 212320   40                              -8.66
 6.01 Init + 212366 213292  927  1  0   81   52   555 0.661  45.09

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 156644 156766  123  1  0   97   48    75 0.820   2.78
S.002 Sngl - 209655 209122  534  0  0   31   42   332 0.967  16.97


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593f:176922739_177164596|GENSCAN_predicted_peptide_1|542_aa
MGFRHVGHAGLQLLISDKRMPRRKKKVKEVSESRNLEKKDVETTSSVSVKRKRRLEDAFI
VISDSDGEEPKEENGLQKTKTKQSNRAKCLAKRKIAQMTEEEQFALALKMSEQEAREVNS
QEEEEEELLRKAIAESLNVNMPCCKSSHISQGNEAEEREEPWDHTEKTEEEPVSGSSGSW
DQSSQPVFENVNVKSFDRCTGHSAEHTQCGKPQESTGRGSAFLKAVQGSGDTSRHCLPTL
ADAKGLQDTGGTVNYFWGIPFCPDGVDPNQYTKVILCQLEVYQKSLKMAQRQLLNKKGFG
EPVLPRPPSLIQNECGQGEQASEKNECISEDMGDEDKEERQESRASDWHSKTKDFQESSI
KSLKEKLLLEEEPTTSHGQERIYGPFGVSSPVSCGLMEVTCQIGCKPTANGNGRGEGQSS
VKADKADNLVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDT
GSVTPSNAVQLDLHSGYRRLSDMIDVNVLFDIIESPCILGIICLYSFDANTPDLHVKMSA
IS

>gi568815593f:176922739_177164596|GENSCAN_predicted_CDS_1|1629_bp
atggggtttcgccatgttggccatgctggtctccaactcctgatctcagacaaaaggatg
ccacggagaaagaaaaaagttaaagaagtctccgaatctcggaacctggagaagaaggat
gtggaaactaccagttctgtcagtgtgaagaggaagcgtagacttgaggatgcattcatt
gtgatatccgatagtgatggagaggaaccaaaggaggaaaatgggttgcagaaaacgaag
acaaaacagtcgaatagagcaaagtgtttggccaaaagaaaaatcgcacagatgacagaa
gaagaacagtttgctctggctctcaaaatgagtgagcaggaagctagggaggtgaacagc
caggaggaggaagaagaggagctcttgaggaaagccattgctgaaagcctgaatgtaaat
atgccatgttgcaaaagctcacatatcagtcagggaaacgaggctgaggaaagagaggag
ccttgggaccacactgaaaaaactgaagaggagccggtctctggcagctcaggaagctgg
gaccagtcaagccagccagtgtttgagaatgtgaacgttaaatcttttgacagatgtact
ggccactcggctgagcacacacagtgtgggaagccacaggaaagtactgggaggggttct
gcttttctcaaagctgtccagggtagcggggacacatctaggcactgtctacctacccta
gcagatgccaaaggtctccaggacactgggggcactgtgaactatttctggggtattcca
ttctgccctgatggagtagaccctaaccagtataccaaggtcattctctgccagttggag
gtttatcaaaagagcctgaaaatggctcagaggcagctccttaataaaaaaggttttggg
gaaccagtgttacctagacctccttctctgatccagaatgaatgtggccaaggagagcag
gctagtgagaaaaatgaatgcatctcagaagatatgggagatgaagacaaagaggagagg
caggagtctagggcatctgactggcactcaaaaaccaaggatttccaggaaagctcaatt
aaaagcttgaaagagaaacttttgttggaggaagaaccaacaaccagtcatggtcaggaa
aggatttatggcccatttggtgtcagtagcccagtcagctgtggcttgatggaggttact
tgtcaaattggctgtaagcccactgctaatgggaatgggaggggtgagggacagtcctca
gtgaaagcagacaaggcagacaacctagttggtaacaaggaagatgctgagaaggaagta
gctatttctaccttctcatccagtaaccaggtatcctgcccgctatgtgaccaatgcttt
ccacccacaaagattgaacgacatgccatgtactgcaatggtctgatggaggaagataca
ggatcagtgaccccgtctaatgctgttcagttggatttacactctggatatcgcagactt
tcagacatgatagatgtaaatgtgctttttgatataatagaaagtccctgtattctcggc
atcatatgtctttatagctttgatgcgaataccccagacctccatgtgaagatgtctgct
atatcctga

>gi568815593f:176922739_177164596|GENSCAN_predicted_peptide_2|165_aa
MAPPRRGLVKSPRAAPAPAPRACLWHRTRAPLPLPPRSQRVAARDPRQPGEGLQSGLRQR
VSTRRLRTAPPTPPCLLFFLSGSAARYSPGGALPDAKGRRVSRCLGSAAGFSSATAGGLV
PCRSVNGARVPGSSGAGFESQQLDSSVLSFNHYIAPRYRNDTRKK

>gi568815593f:176922739_177164596|GENSCAN_predicted_CDS_2|498_bp
atggctcccccgcggcgggggttggttaagtctccgcgcgctgcgcctgcgcccgccccg
agagcgtgtctctggcatcggacgcgcgcgcccctccccctccccccgcgctcccaacgt
gtggcggctcgcgacccccggcaacccggagaaggtctacagagcggcctgcgccagcga
gtgagtacccgccgcctgcgcacagctccgcccacccctccctgcctccttttcttcctc
agcgggtccgcggcccgctactctccgggaggggcgcttcccgacgccaagggccggcgc
gtttccaggtgcttaggcagcgccgcaggcttctcgagcgccacagccggcgggctggtg
ccctgccgctcagttaacggggcgcgagtcccgggcagtagtggagctggatttgaatcc
cagcagctggactccagtgttctttcatttaatcactacatcgcaccgagatatagaaat
gacacccggaaaaagtga

>gi568815593f:176922739_177164596|GENSCAN_predicted_peptide_3|130_aa
MEYPAPATVQAADGGAAGPYSSSELLEGQEPDGVRFDRERARRLWEAVSGAQPRSFSHIR
GLSSLYSSCRRPTVFAIPSQLLDANPDVQELYLGFSANLVRYLEGNQISPVICLLAEQTC
LRKFNMLFVN

>gi568815593f:176922739_177164596|GENSCAN_predicted_CDS_3|393_bp
atggagtatcccgcgccggccacggtgcaggccgcggacggcggagcggccgggccttac
agcagctcggagttgctggagggccaggagccggacggggtgcgctttgaccgcgagagg
gcgcgccgcctgtgggaagccgtgtccggtgcccagccgcgcagtttttcccacattcga
ggactgtcatccctatactcgtcctgtcggagacctacagtctttgccatcccgagccag
ctgcttgatgctaacccagatgtacaagaactctatctgggcttctctgctaaccttgtc
aggtatctggagggaaatcagatttctccagtgatttgtttgcttgctgagcagacttgt
cttcgaaagtttaatatgctatttgtgaactga

>gi568815593f:176922739_177164596|GENSCAN_predicted_peptide_4|994_aa
MIELMPWPGAVAHACNPSTLEGQVEHMIQKNQCLFTNTQCKVCCALLISESQKLAHYQSK
KHANKVKRYLAIHGMETLKGETKKLDSDQWGTIEDFLVGQWYDQTCVLSSNQKSSRSKDK
NQCCPICNMTFSSPVVAQSHYLGKTHAKNLKLKQQSTKVEALSKRLTNPFLVASTLALHQ
NREMIDPDKFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAG
KGYPCKTCKIVLNSIEQYQAHVSGFKHKNHGPLAQFAVVLAFPIIHRVISGSQGKKERAD
AGFYRRQLVGSPAWVPESCEKEMRLLLALLGVLLSVPGPPVLSLEASEEVELEPCLAPSL
EQQEQELTVALGQPVRLCCGRAERGGHWYKEGSRLAPAGRVRGWRGRLEIASFLPEDAGR
YLCLARGSMIVLQNLTLITGDSLTSSNDDEDPKSHRDPSNRHSYPQQAPYWTHPQRMEKK
LHAVPAGNTVKFRCPAAGNPTPTIRWLKDGQAFHGENRIGGIRLRHQHWSLVMESVVPSD
RGTYTCLVENAVGSIRYNYLLDVLERSPHRPILQAGLPANTTAVVGSDVELLCKVYSDAQ
PHIQWLKHIVINGSSFGADGFPYVQVLKTADINSSEVEVLYLRNVSAEDAGEYTCLAGNS
IGLSYQSAWLTVLPEEDPTWTAAAPEARYTDIILYASGSLALAVLLLLAGLYRGQALHGR
HPRPPATVQKLSRFPLARQFSLESGSSGKSSSSLVRGVRLSSSGPALLAGLVSLDLPLDP
LWEFPRDRLVLGKPLGEGCFGQVVRAEAFGMDPARPDQASTVAVKMLKDNASDKDLADLV
SEMEVMKLIGRHKNIINLLGVCTQEGPLYVIVECAAKGNLREFLRARRPPGPDLSPDGPR
SSEGPLSFPVLVSCAYQVARGMQYLESRKCIHRDLAARNVLVTEDNVMKIADFGLARGVH
HIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDV

>gi568815593f:176922739_177164596|GENSCAN_predicted_CDS_4|2985_bp
atgatagaactcatgccttggccgggcgcggtggctcacgcctgtaatcccagcactttg
gaaggccaagtggagcacatgatccagaagaaccaatgtctcttcaccaacacccagtgt
aaggtttgctgcgccttgcttatttctgagtcccagaagctggcacattaccagagcaaa
aaacatgccaacaaagtgaagagatacctagcaatccatggaatggagacattaaagggg
gaaacgaagaagctagactcagatcagtggggaaccattgaagattttctggtggggcag
tggtatgatcagacctgtgttctttcttccaaccagaagagcagcagaagcaaagacaag
aaccagtgctgccccatctgtaacatgaccttttcctcccctgtcgtggcccagtcgcac
tacctggggaagacccacgcaaagaacttaaagctgaagcagcagtccactaaggtggaa
gctctgtcaaaacgccttacaaatcctttccttgtggcctccaccttagccttgcaccag
aatagagagatgatagacccagacaagttctgcagcctctgccatgcaactttcaacgac
cctgtcatggctcaacaacattatgtgggcaagaaacacagaaaacaggagaccaagctc
aaactaatggcacgctatgggcggctggcggaccctgctgtcactgactttccagctgga
aagggctacccctgcaaaacatgtaagatagtgctgaactccatagaacagtaccaagct
catgtcagcggcttcaaacacaagaaccacggaccacttgcccagtttgctgtggtgcta
gccttccccatcatccaccgggtgatttctgggtcccagggaaagaaagagagagctgat
gcaggtttctacagaaggcagttggtgggaagtccagcttgggtccctgagagctgtgag
aaggagatgcggctgctgctggccctgttgggggtcctgctgagtgtgcctgggcctcca
gtcttgtccctggaggcctctgaggaagtggagcttgagccctgcctggctcccagcctg
gagcagcaagagcaggagctgacagtagcccttgggcagcctgtgcgtctgtgctgtggg
cgggctgagcgtggtggccactggtacaaggagggcagtcgcctggcacctgctggccgt
gtacggggctggaggggccgcctagagattgccagcttcctacctgaggatgctggccgc
tacctctgcctggcacgaggctccatgatcgtcctgcagaatctcaccttgattacaggt
gactccttgacctccagcaacgatgatgaggaccccaagtcccatagggacccctcgaat
aggcacagttacccccagcaagcaccctactggacacacccccagcgcatggagaagaaa
ctgcatgcagtacctgcggggaacaccgtcaagttccgctgtccagctgcaggcaacccc
acgcccaccatccgctggcttaaggatggacaggcctttcatggggagaaccgcattgga
ggcattcggctgcgccatcagcactggagtctcgtgatggagagcgtggtgccctcggac
cgcggcacatacacctgcctggtagagaacgctgtgggcagcatccgctataactacctg
ctagatgtgctggagcggtccccgcaccggcccatcctgcaggccgggctcccggccaac
accacagccgtggtgggcagcgacgtggagctgctgtgcaaggtgtacagcgatgcccag
ccccacatccagtggctgaagcacatcgtcatcaacggcagcagcttcggagccgacggt
ttcccctatgtgcaagtcctaaagactgcagacatcaatagctcagaggtggaggtcctg
tacctgcggaacgtgtcagccgaggacgcaggcgagtacacctgcctcgcaggcaattcc
atcggcctctcctaccagtctgcctggctcacggtgctgccagaggaggaccccacatgg
accgcagcagcgcccgaggccaggtatacggacatcatcctgtacgcgtcgggctccctg
gccttggctgtgctcctgctgctggccgggctgtatcgagggcaggcgctccacggccgg
cacccccgcccgcccgccactgtgcagaagctctcccgcttccctctggcccgacagttc
tccctggagtcaggctcttccggcaagtcaagctcatccctggtacgaggcgtgcgtctc
tcctccagcggccccgccttgctcgccggcctcgtgagtctagatctacctctcgaccca
ctatgggagttcccccgggacaggctggtgcttgggaagcccctaggcgagggctgcttt
ggccaggtagtacgtgcagaggcctttggcatggaccctgcccggcctgaccaagccagc
actgtggccgtcaagatgctcaaagacaacgcctctgacaaggacctggccgacctggtc
tcggagatggaggtgatgaagctgatcggccgacacaagaacatcatcaacctgcttggt
gtctgcacccaggaagggcccctgtacgtgatcgtggagtgcgccgccaagggaaacctg
cgggagttcctgcgggcccggcgccccccaggccccgacctcagccccgacggtcctcgg
agcagtgaggggccgctctccttcccagtcctggtctcctgcgcctaccaggtggcccga
ggcatgcagtatctggagtcccggaagtgtatccaccgggacctggctgcccgcaatgtg
ctggtgactgaggacaatgtgatgaagattgctgactttgggctggcccgcggcgtccac
cacattgactactataagaaaaccagcaacggccgcctgcctgtgaagtggatggcgccc
gaggccttgtttgaccgggtgtacacacaccagagtgacgtgtga

>gi568815593f:176922739_177164596|GENSCAN_predicted_peptide_5|329_aa
MCVRAGLGAGTGRAAPRTADAAVLGTQADGPLVPPPPRAGRLLRSPVPRGVRASPLRAGH
LDPSGAAPGHGTARLAGTSPLAQPSAWGLTACILHRARSTESSTTASGFRSRPHAGRIPG
RTPPIGPFGQVAATGQSAAAGAVGRAKGSAAVEPQKRSSLLPASLGSGANAPVKTLGQQQ
QGEAEEEEEEEEEEEQEEEEEEKEEEEKEEEEEQEEKEEEEEEEEEEEEEEEEEEKEEEE
EQEEKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEELFSENSSSTGMPGYGEPPRV
KISHSRIPKDHLEVGPGLSVAQRPPDDRG

>gi568815593f:176922739_177164596|GENSCAN_predicted_CDS_5|990_bp
atgtgcgtgcgcgccgggctgggggccgggacgggacgggccgcgcctcgcaccgcggac
gctgcagttctcggcacccaggcagatggccctctcgtgccaccgccgcccagagcgggc
cgcctgctccgcagcccggttccccggggagtgcgcgcctcgcccctgagggccgggcat
ctggaccccagcggagctgcgccgggacacgggaccgcccggctggccgggacaagcccg
ctggcgcagccctcggcctggggcctcacggcctgcatcctgcaccgggcccgcagcacc
gaatctagcacgaccgcgtcgggcttccgctcccggccacacgcgggccgcattcctggg
agaacgcctcctattggtccgttcggtcaggtggctgccacgggccaatcagcggcggct
ggtgccgtgggccgcgcgaagggctctgcggcggtggagcctcagaaaagatcatctttg
cttccagcttctctgggctcaggggccaatgctcccgtcaagacgctggggcagcagcag
cagggggaggctgaggaggaggaagaggaggaggaggaagaggagcaggaggaggaggag
gaagagaaggaggaggaagagaaggaggaggaagaggagcaggaggagaaggaggaagag
gaggaggaggaagaggaggaggaggaagaggaggaggaggaagagaaggaggaggaagag
gagcaggaggagaaggaggaagaggaggaggaggaagaggaggaggaggaagaggaggag
gaagaggaggaggaggaagaggaggaggaggaagaggaagaggaggaggaggacgaggag
ttgttcagcgagaacagctcctccaccgggatgccaggatacggggagcccccgagggtg
aagatctcccatagcaggatcccaaaagaccacctggaggtagggccagggctcagtgtg
gctcagcgccctcccgacgaccggggctag

>gi568815593f:176922739_177164596|GENSCAN_predicted_peptide_6|309_aa
MDQTCELPRRNCLLPFSNPVNLDAPEDKDSPFGNGQSNFSEPLNGCTMQLSTVSGTSQNA
YGQDSPSCYIPLRRLQDLASMINVEYLNGSADGSESFQDPEKSDSRAQTPIVCTSLSPGG
PTALAMKQEPSCNNSPELQVKVTKTIKNGFLHFENFTCVDDADVDSEMDPEQPVTEDESI
EEIFEETQTNATCNYETKSENGVKVAMGSEQDSTPESRHGAVKSPFLPLAPQTETQKNKQ
RNEVDGSNEKAALLPAPFSLGDTNITIEEQLNSINLSFQDDPDSSTSTLGNMLELPGTSS
SSTSQELPF

>gi568815593f:176922739_177164596|GENSCAN_predicted_CDS_6|927_bp
atggatcagacctgtgaactacccagaagaaattgtctgctgcccttttccaatccagtg
aatttagatgcccctgaagacaaggacagccctttcggtaatggtcaatccaatttttct
gagccacttaatgggtgtactatgcagttatcgactgtcagtggaacatcccaaaatgct
tatggacaagattctccatcttgttacattccactgcggagactacaggatttggcctcc
atgatcaatgtagagtatttaaatgggtctgctgatggatcagaatcctttcaagaccct
gaaaaaagtgattcaagagctcagacgccaattgtttgcacttccttgagtcctggtggt
cctacagcacttgctatgaaacaggaaccctcttgtaataactcccctgaactccaggta
aaagtaacaaagactatcaagaatggctttctgcactttgagaattttacttgtgtggac
gatgcagatgtagattctgaaatggacccagaacagccagtcacagaggatgagagtata
gaggagatctttgaggaaactcagaccaatgccacctgcaattatgagactaaatcagag
aatggtgtaaaagtggccatgggaagtgaacaagacagcacaccagagagtagacacggt
gcagtcaaatcgccattcttgccattagctcctcagactgaaacacagaaaaataagcaa
agaaatgaagtggacggcagcaatgaaaaagcagcccttctcccagcccccttttcacta
ggagacacaaacattacaatagaagagcaattaaactcaataaatttatcttttcaggat
gatccagattccagtaccagtacattaggaaacatgctagaattacctggaacttcatca
tcatctacttcacaggaattgccattt