FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7638, 381 aa
  1>>>pF1KB7638 381 - 381 aa - 381 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8146+/-0.000772; mu= 7.0870+/- 0.046
 mean_var=189.1662+/-37.911, 0's: 0 Z-trim(116.1): 21  B-trim: 249 in 1/52
 Lambda= 0.093251
 statistics sampled from 16673 (16683) to 16673 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.82), E-opt: 0.2 (0.512), width:  16
 Scan time:  3.510

The best scores are:                                      opt bits E(32554)
CCDS4700.1 NFKBIL1 gene_id:4795|Hs108|chr6         ( 381) 2656 369.1 3.8e-102
CCDS47400.1 NFKBIL1 gene_id:4795|Hs108|chr6        ( 358) 2501 348.2 6.8e-96
CCDS47399.1 NFKBIL1 gene_id:4795|Hs108|chr6        ( 366) 1373 196.4 3.3e-50


>>CCDS4700.1 NFKBIL1 gene_id:4795|Hs108|chr6              (381 aa)
 initn: 2656 init1: 2656 opt: 2656  Z-score: 1947.4  bits: 369.1 E(32554): 3.8e-102
Smith-Waterman score: 2656; 99.7% identity (99.7% similar) in 381 aa overlap (1-381:1-381)

               10        20        30        40        50        60
pF1KB7 MSNPSPQVPEEEASTSVCRPKSSMASTSRRQRRERRFRRYLSAGRLVRAQALLQRHPGLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSNPSPQVPEEEASTSVCRPKSSMASTSRRQRRERRFRRYLSAGRLVRAQALLQRHPGLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 VDAGQPPPLHRACARHDAPALCLLLRLGADPAHQDRHGDTALHAAARQGPDAYTDFFLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VDAGQPPPLHRACARHDAPALCLLLRLGADPAHQDRHGDTALHAAARQGPDAYTDFFLPL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LSRCPSAMGIKNKDGETPGQILGWGPPWDSAEEEEEDDASKEREWRQKLQGELEDEWQEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LSRCPSAMGIKNKDGETPGQILGWGPPWDSAEEEEEDDASKEREWRQKLQGELEDEWQEV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 MGRFEGDASHETQEPESFSAWSDRLAREHAQKCQQQQREAEGSCRPPRAEGSSQSWRQQE
       ::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
CCDS47 MGRFEGDASHETQEPESFSAWSDRLAREHAQKCQQQQREAEGSRRPPRAEGSSQSWRQQE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 EEQRLFRERARAKEEELRESRARRAQEALGDREPKPTRAGPREEHPRGAGRGSLWRFGDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EEQRLFRERARAKEEELRESRARRAQEALGDREPKPTRAGPREEHPRGAGRGSLWRFGDV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 PWPCPGGGDPEAMAAALVARGPPLEEQGALRRYLRVQQVRWHPDRFLQRFRSQIETWELG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PWPCPGGGDPEAMAAALVARGPPLEEQGALRRYLRVQQVRWHPDRFLQRFRSQIETWELG
              310       320       330       340       350       360

              370       380 
pF1KB7 RVMGAVTALSQALNRHAEALK
       :::::::::::::::::::::
CCDS47 RVMGAVTALSQALNRHAEALK
              370       380 

>>CCDS47400.1 NFKBIL1 gene_id:4795|Hs108|chr6             (358 aa)
 initn: 2501 init1: 2501 opt: 2501  Z-score: 1835.1  bits: 348.2 E(32554): 6.8e-96
Smith-Waterman score: 2501; 99.7% identity (99.7% similar) in 358 aa overlap (24-381:1-358)

               10        20        30        40        50        60
pF1KB7 MSNPSPQVPEEEASTSVCRPKSSMASTSRRQRRERRFRRYLSAGRLVRAQALLQRHPGLD
                              :::::::::::::::::::::::::::::::::::::
CCDS47                        MASTSRRQRRERRFRRYLSAGRLVRAQALLQRHPGLD
                                      10        20        30       

               70        80        90       100       110       120
pF1KB7 VDAGQPPPLHRACARHDAPALCLLLRLGADPAHQDRHGDTALHAAARQGPDAYTDFFLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VDAGQPPPLHRACARHDAPALCLLLRLGADPAHQDRHGDTALHAAARQGPDAYTDFFLPL
        40        50        60        70        80        90       

              130       140       150       160       170       180
pF1KB7 LSRCPSAMGIKNKDGETPGQILGWGPPWDSAEEEEEDDASKEREWRQKLQGELEDEWQEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LSRCPSAMGIKNKDGETPGQILGWGPPWDSAEEEEEDDASKEREWRQKLQGELEDEWQEV
       100       110       120       130       140       150       

              190       200       210       220       230       240
pF1KB7 MGRFEGDASHETQEPESFSAWSDRLAREHAQKCQQQQREAEGSCRPPRAEGSSQSWRQQE
       ::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
CCDS47 MGRFEGDASHETQEPESFSAWSDRLAREHAQKCQQQQREAEGSRRPPRAEGSSQSWRQQE
       160       170       180       190       200       210       

              250       260       270       280       290       300
pF1KB7 EEQRLFRERARAKEEELRESRARRAQEALGDREPKPTRAGPREEHPRGAGRGSLWRFGDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EEQRLFRERARAKEEELRESRARRAQEALGDREPKPTRAGPREEHPRGAGRGSLWRFGDV
       220       230       240       250       260       270       

              310       320       330       340       350       360
pF1KB7 PWPCPGGGDPEAMAAALVARGPPLEEQGALRRYLRVQQVRWHPDRFLQRFRSQIETWELG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PWPCPGGGDPEAMAAALVARGPPLEEQGALRRYLRVQQVRWHPDRFLQRFRSQIETWELG
       280       290       300       310       320       330       

              370       380 
pF1KB7 RVMGAVTALSQALNRHAEALK
       :::::::::::::::::::::
CCDS47 RVMGAVTALSQALNRHAEALK
       340       350        

>>CCDS47399.1 NFKBIL1 gene_id:4795|Hs108|chr6             (366 aa)
 initn: 1361 init1: 1361 opt: 1373  Z-score: 1014.8  bits: 196.4 E(32554): 3.3e-50
Smith-Waterman score: 2508; 95.8% identity (95.8% similar) in 381 aa overlap (1-381:1-366)

               10        20        30        40        50        60
pF1KB7 MSNPSPQVPEEEASTSVCRPKSSMASTSRRQRRERRFRRYLSAGRLVRAQALLQRHPGLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSNPSPQVPEEEASTSVCRPKSSMASTSRRQRRERRFRRYLSAGRLVRAQALLQRHPGLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 VDAGQPPPLHRACARHDAPALCLLLRLGADPAHQDRHGDTALHAAARQGPDAYTDFFLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VDAGQPPPLHRACARHDAPALCLLLRLGADPAHQDRHGDTALHAAARQGPDAYTDFFLPL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LSRCPSAMGIKNKDGETPGQILGWGPPWDSAEEEEEDDASKEREWRQKLQGELEDEWQEV
       :::::::::::::::::::::::::::::::::::::::::::::::::::         
CCDS47 LSRCPSAMGIKNKDGETPGQILGWGPPWDSAEEEEEDDASKEREWRQKLQG---------
              130       140       150       160       170          

              190       200       210       220       230       240
pF1KB7 MGRFEGDASHETQEPESFSAWSDRLAREHAQKCQQQQREAEGSCRPPRAEGSSQSWRQQE
             ::::::::::::::::::::::::::::::::::::: ::::::::::::::::
CCDS47 ------DASHETQEPESFSAWSDRLAREHAQKCQQQQREAEGSRRPPRAEGSSQSWRQQE
                   180       190       200       210       220     

              250       260       270       280       290       300
pF1KB7 EEQRLFRERARAKEEELRESRARRAQEALGDREPKPTRAGPREEHPRGAGRGSLWRFGDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EEQRLFRERARAKEEELRESRARRAQEALGDREPKPTRAGPREEHPRGAGRGSLWRFGDV
         230       240       250       260       270       280     

              310       320       330       340       350       360
pF1KB7 PWPCPGGGDPEAMAAALVARGPPLEEQGALRRYLRVQQVRWHPDRFLQRFRSQIETWELG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PWPCPGGGDPEAMAAALVARGPPLEEQGALRRYLRVQQVRWHPDRFLQRFRSQIETWELG
         290       300       310       320       330       340     

              370       380 
pF1KB7 RVMGAVTALSQALNRHAEALK
       :::::::::::::::::::::
CCDS47 RVMGAVTALSQALNRHAEALK
         350       360      




381 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:30:32 2016 done: Fri Nov  4 12:30:32 2016
 Total Scan time:  3.510 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]