GENSCAN 1.0	Date run:  4-Nov-116	Time: 12:19:33

Sequence gi568815586f:12617840_12818943 : 201104 bp : 42.62% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   6583   6790  208  0  1   22   91   218 0.544  13.23
 1.02 Intr +   8033   8055   23  0  2   71   37    17 0.069  -8.76
 1.03 Intr +  17938  18135  198  0  0   22   95   233 0.869  16.03
 1.04 Intr +  27866  27939   74  1  2   66   77    39 0.073  -2.11
 1.05 Intr +  29433  29570  138  0  0   43   44   151 0.108   4.86
 1.06 Intr +  40003  40125  123  1  0  -14   91   165 0.083   5.38
 1.07 Intr +  42772  42869   98  1  2   66   92    66 0.033   3.53
 1.08 Intr +  43918  44444  527  2  2  -60   66   642 0.042  38.93
 1.09 Intr +  47496  47621  126  2  0   67   -2   146 0.023   3.46
 1.10 Intr +  55710  55835  126  2  0   63    9   116 0.003   1.16
 1.11 Intr +  70989  71075   87  2  0   46   63   102 0.033   2.75
 1.12 Intr +  77047  77129   83  0  2   66  111    26 0.094   0.22
 1.13 Intr +  78621  78859  239  0  2  -51   14   226 0.007  -2.36
 1.14 Term +  96651  97018  368  1  2  117   42   199 0.948  11.98
 1.15 PlyA +  97473  97478    6                               1.05

 2.00 Prom +  99494  99533   40                              -9.55
 2.01 Sngl + 100001 100540  540  1  0   53   37   538 0.555  40.63
 2.02 PlyA + 100942 100947    6                               1.05

 3.04 PlyA - 102059 102054    6                               1.05
 3.03 Term - 106375 106150  226  0  1    8   55   213 0.148   5.27
 3.02 Intr - 134005 133977   29  1  2  114   86    15 0.011  -0.10
 3.01 Init - 141919 141842   78  1  0   82   44    91 0.361   5.21
 3.00 Prom - 146867 146828   40                              -5.35

 4.00 Prom + 148678 148717   40                              -4.45
 4.01 Init + 167155 167274  120  0  0   51   33   163 0.412   7.34
 4.02 Term + 168896 169813  918  1  0   39   54  1080 0.477  90.92
 4.03 PlyA + 173226 173231    6                               1.05

 5.03 PlyA - 173603 173598    6                               1.05
 5.02 Term - 181616 181485  132  2  0   23   41   165 0.090   2.41
 5.01 Init - 188133 187999  135  0  0   38  116    80 0.296   5.99

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  43983  44444  462  2  0   65   66   565 0.847  47.74
S.002 Init + 195529 195615   87  0  0   91   85   100 0.866  10.69
S.003 Intr + 196292 196385   94  1  1   29  100    87 0.812   2.62


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586f:12617840_12818943|GENSCAN_predicted_peptide_1|805_aa
GVSEAGYFPDPFTGLTTGASYTQPTTLNSLQEGACEQMSEGTGVNEHGNRPAALVLAGVN
FMQAQWQHPEFYSVWDKVVGGKVKKPGKRGRKPAKIDLKAKLERSRQSARECRARKKLRY
QYLEELVSSRERAICALREELEMLAFAGSPEENQLCASLPNLMFSDIRLYRKHDWGGLRK
LTVMMEDKVRAGILHGSIGTRDRGYHTLLNNRIFSRLDINVFDEDEKKGRIQIPLKGCIP
VPSLLTDGLREPGARILIKIQPQKTCQQVPIYGVLSIADLASGYLEEAHQEVDDSVGSAF
PRGGEEIVTMTVPVGAIEKEHRGHKACIKDPRCRNHFLGFFSGHLEAQRIDDGVEPVYAD
GEENVDLDTWSEILKISHNLARCTTQRPPSSGELEQDERRAGNADEKVSTCHGDHKVVGG
RLSPPTPMDDQTNQGIAEDRKQPQNPKEDAGCGHFPGFQHIVKLLYTHESVCPFPQPNHL
EAEDPNAQKQDEGARGVPESRFPLLGLVLDGVVRERFSEEVIWQLKPQRQEVRHNIQAEE
MMSAKTLVGHEFTMSSPAAGFSITGQHVPQGSGRQGHFPMHFTHTAQLPGYTLGCQNEMK
SLSWLAAFLWGRGIPRRRSLRGPEGRTTTSSETKFFKKVKIEEVSQFITLEPAFCLAFPL
FTLRKSPLAATQVTVLLPLRLRGGCEDYRNLGWLMGRFSALSRKTAVKMATKTSRRTGGF
GETAHFRAVQCRAFRLLPGSTFNTVYLKIFPLAYSLAAAHFAEGWRSDLYAPCSFRDSIV
FFFTRRRYYSRRLRSHYLLYRSPVP

>gi568815586f:12617840_12818943|GENSCAN_predicted_CDS_1|2418_bp
ggagtcagtgaagcaggatatttccctgaccctttcacgggactcacaacgggtgcctca
tatactcagcccaccactctcaactccttgcaggagggagcatgtgagcaaatgagtgag
ggaactggagtgaatgagcacgggaatcggccagctgctttggtgctagcaggagtgaac
tttatgcaggcccaatggcagcatccagagttttacagtgtttgggacaaagtggttgga
ggcaaagtaaagaagcccggtaaacgtggtcggaagccagccaaaattgacttgaaagca
aaacttgagaggagccggcagagtgcaagagaatgccgagcccgaaaaaagctgagatat
cagtatttggaagagttggtatccagtcgagaaagagctatatgtgccctcagagaggaa
ctggaaatgctggcttttgctggctccccagaggagaaccaattgtgtgcatctcttccc
aacttgatgttcagtgacatcaggctgtacaggaagcatgactggggaggcctcaggaaa
cttacagtcatgatggaagacaaagtgagagcaggcatcttgcatggcagcattgggacc
agggatcgggggtaccacacgcttttaaataaccggatcttcagcaggctggacattaac
gtattcgatgaagatgagaagaaagggagaattcagattccactcaaaggatgcatccct
gtcccttccctcctcaccgacggtttacgagaacctggagccagaatcctgattaaaatc
caaccacagaagacttgccagcaagttccaatatatggcgtgctttccatagcagatctg
gctagtggttacttggaggaagcccaccaagaagtggatgacagtgtaggcagtgccttc
ccaagaggaggggaggaaatagttacaatgactgtcccagttggagccatagaaaaagag
cacaggggtcacaaagcctgcatcaaagacccacgatgccgcaatcattttcttggcttt
ttctctggacaccttgaagctcagaggatagacgatggtgtagaaccggtctatgcagat
ggagaggagaacgtagatctggacacctggagtgagatattgaaaatatcgcacaacctt
gcacgttgcactacccagcgtccaccttccagtggtgaactggagcaggacgaaaggcgt
gctggcaacgctgatgagaaggtcagcacatgccatggagaccacaaagtagttggtggt
agactgagtcctcctactcctatggatgaccaaacaaaccagggaattgccgaagataga
aaacaaccacagaatcccaaagaagatgctggctgtggccacttccccgggtttcagcac
atagtgaagctgctttacacccatgagtctgtctgcccatttccccagcccaaccacttg
gaagcagaggatcccaatgctcagaaacaggacgagggagcccgaggagttcctgagtct
agatttcccctgctgggtctggttttagatggagtggttagagaaaggttctctgaagag
gttatatggcagctgaaaccccaacgacaggaagtccgccataacattcaggcagaagaa
atgatgagtgcaaagaccctggtgggccacgagttcaccatgagttcaccagctgcaggc
ttcagcatcacaggacagcatgttccccagggatcaggcagacaagggcattttcctatg
cacttcacacatacagcgcagctgccaggatatactttaggctgccaaaatgaaatgaag
tcactttcttggctagcggcatttctctggggccgaggaattccacgaagaagatctctg
cgaggcccagaaggccgcacaactacttcttcagaaacaaaattttttaaaaaagtaaaa
atagaggaagtcagccagtttatcaccttggaaccagcgttttgtttggcttttccgctt
ttcactctacgaaaaagcccattggcggctacccaggttaccgtcctgttgccattgcgc
ctgcgcggcggttgtgaagattacagaaatctgggatggcttatgggacgcttctcagcc
ctaagtaggaaaacagcagtgaaaatggcaaccaaaacatcacgcaggactgggggtttt
ggggaaacagctcactttagagcagtgcagtgtagagctttccgtcttttaccagggtcc
acctttaacactgtttatctgaaaattttccccctggcttactcgcttgcagctgcccac
tttgcagaaggatggcgctctgatctctacgctccctgttccttcagggactccatagta
ttttttttcacgcgtcgtcgctactacagcagacgcctgcgttctcattatttgctgtac
agatctccggtgccttga

>gi568815586f:12617840_12818943|GENSCAN_predicted_peptide_2|179_aa
MSNVRVSNGSPSLERMDARQAEHPKPSACRNLFGPVDHEELTRDLEKHCRDMEEASQRKW
NFDFQNHKPLEGKYEWQEVEKGSLPEFYYRPPRPPKGACKVPAQESQDVSGSRPAAPLIG
APANSEDTHLVDPKTDPSDSQTGLAEQCAGIRKRPATDGNDPFPTIECVWGPALPAGGC

>gi568815586f:12617840_12818943|GENSCAN_predicted_CDS_2|540_bp
atgtcaaacgtgcgagtgtctaacgggagccctagcctggagcggatggacgccaggcag
gcggagcaccccaagccctcggcctgcaggaacctcttcggcccggtggaccacgaagag
ttaacccgggacttggagaagcactgcagagacatggaagaggcgagccagcgcaagtgg
aatttcgattttcagaatcacaaacccctagagggcaagtacgagtggcaagaggtggag
aagggcagcttgcccgagttctactacagacccccgcggccccccaaaggtgcctgcaag
gtgccggcgcaggagagccaggatgtcagcgggagccgcccggcggcgcctttaattggg
gctccggctaactctgaggacacgcatttggtggacccaaagactgatccgtcggacagc
cagacggggttagcggagcaatgcgcaggaataaggaagcgacctgcaaccgacggtaat
gaccctttcccaaccatagaatgtgtttggggccccgctttgcctgctggagggtgttaa

>gi568815586f:12617840_12818943|GENSCAN_predicted_peptide_3|110_aa
MPIYKLVTPNRVTGYTDVKAARAADGRSMDYIGHTSSDIPTAGEAAGYSGGESVCGEEWE
LSLLSQRRGEEEGGKFLRNRPARLRGGGAAARARELRATTATVRGAARYR

>gi568815586f:12617840_12818943|GENSCAN_predicted_CDS_3|333_bp
atgcccatttataaactagtcactcccaacagggtaactggatatactgacgtcaaggca
gcccgagctgcagacgggagatcaatggattatattggacacacaagctccgatatcccc
acggccggggaggcggccggttactcaggtggagagtccgtttgcggagaggagtgggag
ctttcgctgctttctcagcgcagaggagaggaggagggaggaaagtttctgagaaaccgc
ccagcccggctgcgcggcggaggcgcggccgcccgggcgcgggaactgcgcgcgacgacg
gcgacagtgcggggggctgcacgttacagatga

>gi568815586f:12617840_12818943|GENSCAN_predicted_peptide_4|345_aa
MQPDPTDFSDACDLECALSETANVFSTAGDAQNCTQHFLWNRSLRTRLMIHWKQTRSPSV
AVAAPLNSCQVPAGVRAAGRERRLARRLQADRVSMSPQGMERPAAREPHGPDALRRFQGL
LLDRRGRLHGQVLRLREVARRLERLRRRSLVANVAGSSLSATGALAAIVGLSLSPVTLGT
SLLVSAVGLGVATAGGAVTITSDLSLIFCNSRELRRVQEIAATCQDQMREILSCLEFFCR
WQGCGDRQLLQCGRNASIALYNSVYFIVFFGSRGFLIPRRAEGDTKVSQAVLKAKIQKLA
ESLESCTGALDELSEQLESRVQLCTKSSRGHDLKISADQRAGLFF

>gi568815586f:12617840_12818943|GENSCAN_predicted_CDS_4|1038_bp
atgcagcctgaccccactgatttttctgatgcatgtgacctggagtgtgccctttctgag
accgccaatgtcttctccacagctggagatgcccaaaactgcacgcagcacttcctgtgg
aacaggtctttgagaactcgtctcatgatccactggaaacagacccgttcccctagcgtg
gcagtggctgctccgctgaactcgtgccaagttcccgctggcgtccgggcagcagggcgg
gagcggcggctggcacggagactccaggctgaccgcgtgtctatgtccccgcagggaatg
gagaggccggcggcccgggagccgcatgggcccgacgcgctgcggcgcttccagggactg
ctgctggaccgccgaggccggctgcacggccaggtgctgcgcctgcgcgaggtggcccgg
cgcctggagcgcctgcgcaggcgctccctcgtagccaacgtggccggcagctcgctgagc
gcaacgggcgccctcgccgccatcgtggggctctcgctcagcccggtcaccctggggacc
tcgctgctggtgtcggccgtggggctgggggtggccacagccggaggggccgtcaccatc
acgtccgatctctcgctgatcttctgcaactcccgggagctgcggagggtgcaggagatc
gcggccacctgccaggaccagatgcgagagatcctgagctgcctcgagtttttctgccgc
tggcagggctgcggggaccgccagctgctgcagtgcgggaggaacgcctccatcgccctg
tacaattctgtctacttcatcgtcttctttggctcacgtggcttcctcatccccaggcgg
gcggagggggacaccaaggttagccaggccgtgctgaaggccaagattcagaaactggcc
gagagcctggagtcctgcaccggggctctggacgaactcagcgagcagctggagtctcgg
gttcagctctgcaccaagtccagtcgtggccacgacctcaagatctctgctgaccagcgt
gcagggctgtttttctga

>gi568815586f:12617840_12818943|GENSCAN_predicted_peptide_5|88_aa
MIDLTWNVKARNVSGIPRFLASAGSKVAEPFTQLGNTGGGANMWKALKMEEGATSQGMQE
PLEGGKGKKTRSPLSPLGKRIALPTAGF

>gi568815586f:12617840_12818943|GENSCAN_predicted_CDS_5|267_bp
atgattgatttaacatggaacgtgaaagccaggaatgtgtcggggattcccagatttttg
gcttcagcaggtagcaaagtggcagaaccattcacacagctaggaaacactggaggaggg
gcaaatatgtggaaggctttgaagatggaggaaggggccacaagccagggaatgcaggag
cctctagaaggtggaaaaggcaagaaaacacgctctcccttatcgcctctaggaaaaagg
atagccctgccgactgctggattttag