GENSCAN 1.0	Date run:  4-Nov-116	Time: 12:17:42

Sequence gi568815577f:25539822_25812383 : 272562 bp : 39.33% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Sngl +   6334   6708  375  0  0   77   42   191 0.986   9.29
 1.02 PlyA +   7287   7292    6                               1.05

 2.00 Prom +   9683   9722   40                              -7.25
 2.01 Init +  16838  16913   76  1  1   87   89    44 0.409   5.70
 2.02 Intr +  20759  20868  110  0  2   44   87    69 0.310   1.48
 2.03 Intr +  25597  25718  122  0  2    6   59   149 0.118   2.17
 2.04 Intr +  28537  28685  149  1  2   93   44    65 0.206   1.56
 2.05 Intr +  36558  36637   80  1  2   82   98    44 0.233   3.15
 2.06 Term +  46368  46538  171  2  0   74   38   119 0.325   2.34
 2.07 PlyA +  47171  47176    6                               1.05

 3.12 PlyA -  49842  49837    6                               1.05
 3.11 Term -  50719  50600  120  1  0   95   41    39 0.357  -2.61
 3.10 Intr -  53144  52991  154  1  1   23   89    97 0.727   2.45
 3.09 Intr -  54137  54072   66  1  0  115  111    42 0.944   6.30
 3.08 Intr -  57593  57481  113  2  2   46  108    61 0.859   2.16
 3.07 Intr -  60045  59978   68  1  2   41  106    81 0.749   2.91
 3.06 Intr -  66834  66628  207  1  0   93   85   118 0.947  10.13
 3.05 Intr -  67931  67582  350  1  2   92   64   220 0.447  14.08
 3.04 Intr -  83215  83088  128  1  2   82   97     4 0.134  -0.74
 3.03 Intr -  83990  83866  125  0  2   25  100    75 0.173   1.78
 3.02 Intr -  87023  86986   38  1  2  111   75    24 0.207   0.39
 3.01 Init -  90478  90279  200  1  2   54   75   101 0.441   3.82
 3.00 Prom -  91812  91773   40                              -4.05

 4.00 Prom +  93461  93500   40                              -8.25
 4.01 Init + 100001 100067   67  1  1  101   87   209 0.987  21.39
 4.02 Intr + 144062 144127   66  0  0  100   87    49 0.090   3.96
 4.03 Intr + 150045 150152  108  1  0   49  121    17 0.341   0.44
 4.04 Intr + 153935 154102  168  0  0   81   20   172 0.449   8.70
 4.05 Intr + 158856 159058  203  1  2   37   95   151 0.635   8.78
 4.06 Intr + 162349 162448  100  0  1    8   87   102 0.400   0.86
 4.07 Intr + 166158 166265  108  1  0   43  108    48 0.302   1.64
 4.08 Intr + 175356 175491  136  1  1   59   70    74 0.024   1.41
 4.09 Term + 179218 179323  106  1  1   83   33    67 0.019  -2.40
 4.10 PlyA + 180031 180036    6                               1.05

 5.05 PlyA - 180538 180533    6                               1.05
 5.04 Term - 184856 184819   38  0  2  118   49    62 0.982   1.82
 5.03 Intr - 185529 185405  125  2  2  101  102   145 0.999  16.51
 5.02 Intr - 189980 189810  171  1  0  100   98   202 0.836  20.54
 5.01 Init - 190139 190105   35  2  2   61   80    34 0.807  -0.71
 5.00 Prom - 190467 190428   40                              -9.35

 6.00 Prom + 191435 191474   40                             -10.25
 6.01 Init + 192541 192549    9  0  0   55   61     0 0.228  -5.36
 6.02 Intr + 193958 194092  135  1  0   90  103    40 0.543   5.54
 6.03 Intr + 194372 194438   67  1  1   67   61    69 0.713  -0.34
 6.04 Intr + 194820 194948  129  1  0   93  100    82 0.777   9.65
 6.05 Intr + 195043 195249  207  2  0   13  110   174 0.549  10.23
 6.06 Intr + 195620 195757  138  0  0    8   92    92 0.256   1.11
 6.07 Intr + 201776 201854   79  0  1   13   81   117 0.026   1.19
 6.08 Intr + 205389 205533  145  0  1   36   91   134 0.999   7.86
 6.09 Intr + 209215 209299   85  0  1   45  115    57 0.997   2.57
 6.10 Intr + 212168 212413  246  0  0   47   45   278 0.453  15.91
 6.11 Intr + 218189 218383  195  0  0   71   11   122 0.533   1.26
 6.12 Intr + 222491 222544   54  0  0   88   92    79 0.982   6.33
 6.13 Intr + 224389 224529  141  2  0   81   68    72 0.923   3.90
 6.14 Intr + 224774 224966  193  0  1   72  121   237 0.998  23.03
 6.15 Term + 229183 229411  229  1  1   65   52   274 0.999  16.62
 6.16 PlyA + 229742 229747    6                               1.05

 7.00 Prom + 230391 230430   40                              -6.85
 7.01 Init + 239567 239785  219  1  0   71   73   296 0.972  25.08
 7.02 Term + 239838 239894   57  2  0   95   39    59 0.823  -1.59
 7.03 PlyA + 240050 240055    6                               1.05

 8.05 PlyA - 240845 240840    6                               1.05
 8.04 Term - 251798 251653  146  0  2   86   44    63 0.047  -1.21
 8.03 Intr - 258858 258773   86  2  2   66   45    66 0.158  -1.36
 8.02 Intr - 261801 261693  109  1  1  129   89    83 0.768  10.92
 8.01 Init - 266860 266563  298  1  1   45   42   175 0.666   6.03

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 143027 142668  360  2  0   46   99   181 0.835  11.23
S.002 Init + 201778 201854   77  0  2   91   81   115 0.969  11.71


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815577f:25539822_25812383|GENSCAN_predicted_peptide_1|124_aa
MRFGGDKHLNYINLSKNGYLQEEEAGICKALRKQITTQLLEAINTVQYCQDLDSVSYCYC
KTNYHKFYGLEQDKFIFLQSESQNSKMGQQGCAPSGGSSGESVSCLFQLLEAARLPWLVA
PFHP

>gi568815577f:25539822_25812383|GENSCAN_predicted_CDS_1|375_bp
atgagatttggaggcgacaagcatctaaactatatcaacttgtccaagaatggctacctg
caggaggaagaagctggcatctgcaaggctctacgaaaacagattacaactcagttactt
gaggcaatcaatactgtccaatactgtcaagatttggactcagtatcctattgctactgt
aaaacaaattaccacaaattttatggcttagaacaagacaaatttattttcttacagtct
gaaagtcagaattctaaaatgggtcaacagggctgtgctccttctggaggctctagtgga
gaatctgtctcttgccttttccagcttctagaggctgcccgccttccttggcttgtggcc
cccttccatccttaa

>gi568815577f:25539822_25812383|GENSCAN_predicted_peptide_2|235_aa
MDAAGGHYLKQINAETENHLLHVLTSPQRHMDLESRETGLRSQPSRVGTEFESQLDYLLG
SKAHHMSEQFSILTHKSKALSNVEEDVIPKITTLTHSDTLTRNFIHICSITFQHSSDLPL
SQCEVRVLRKRVPAVRLQLAVVLLLLIPQNESEGFLLTSHYKNSWSMSKTESVFGLEEGT
HQTDMAKSEFNTPKPVLPASSILVKGSTQIPKDSIQEFTLFFLPAYSINSPTNSA

>gi568815577f:25539822_25812383|GENSCAN_predicted_CDS_2|708_bp
atggatgcagctggaggccattatcttaagcaaattaatgcagaaacagaaaatcaccta
ctacatgttctcacttctcctcaacgtcacatggatctggaaagcagggagactggacta
cggagccagccctccagggttggaactgagtttgaatctcagcttgactacttactagga
tctaaggcacatcatatgtctgagcagttcagcatcctcactcacaagtccaaggctctc
agcaatgtggaagaagatgtgattcctaaaattaccacccttacacacagtgacacactc
accagaaactttattcacatttgttctataacatttcagcacagttcagaccttccgctg
agccagtgtgaggtcagggtgttgaggaagcgagtccctgcagtcagactccagctggct
gtcgtcctgcttctgcttattccacagaatgagtctgagggattcctcctgaccagtcat
tacaaaaattcttggagcatgagcaagactgagtctgtgtttggattggaggaagggact
catcaaacagacatggctaaatctgaattcaacaccccaaaacctgtcctacctgcatca
tctatcttggtaaagggctccacccagatacctaaggacagcattcaagaattcactctc
ttcttcctacctgcatattccatcaacagtcctactaattcagcctaa

>gi568815577f:25539822_25812383|GENSCAN_predicted_peptide_3|522_aa
MLVAGTQLHAITDSVSSCEDVGGRERHKSGKAITEGAIKKERAIREVREDFTGESEGWSL
KEVGEGRIGTQHPGALKIKVTLNVFQLSRGLNSQPVLLRLQHASESTESLVKMQIWIQQD
KGLLVSKYFRLQRKGMRIKSMVIRDDFYQQGNSPKLHKQQSDCKAYVVGGRPTALGALHL
WVGDRAQVSSTGNAPRLRVSGSQPLNPQRGLTPPGGGEQSECWVRNRPVLRNSECAFGFR
GRRAEKDLRATVLTAAMEALAMGSRALRLWLVAPGGGIKWRFIATSSASQLSPTELTEMR
NDLFNKEKARQLSLTPRTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAMLISGAFCYDVV
LDSKLDEWMPTKENLRSFTKDAHALIYKDLPFETLEVEAKVALEIFQHSKYKVDFIEEKA
SQNPERIVKLHRIGDFIDVSEGPLIPRTSICFQYEVSAVHNLQPTQPSLIRRFQGVSLPV
HLRPSQFQKMGSSFNSSLSNSQPMGCMQSRTALNETQICKLS

>gi568815577f:25539822_25812383|GENSCAN_predicted_CDS_3|1569_bp
atgctagtggctgggacacaactgcacgcaataacagacagtgtctcatcttgtgaagat
gtaggtgggagagagagacataaatcaggcaaagcgatcactgagggtgctattaaaaaa
gaacgtgctatcagggaggtcagggaagacttcacaggggaatctgaaggctggagtctg
aaggaggtaggagaaggcaggatagggactcaacatcctggagcactaaaaatcaaagtt
acacttaatgttttccaactgagcaggggactgaactctcaaccagtgcttctcaggctt
caacatgcatcggaatcaacagagagtcttgttaaaatgcagatttggattcagcaggac
aagggccttctggtgtcaaaatattttagattgcagaggaaagggatgagaataaaatcc
atggttatcagagatgatttctaccaacagggaaattcacccaaattgcacaaacagcaa
tcagattgtaaagcctacgtggtgggcggcaggccgaccgccctgggggccctgcacctc
tgggtaggtgaccgcgcccaggtatcgagcacaggtaacgcgccccggctccgagtctcg
gggtctcagccactgaatccccagcgaggcctgacgccccccggtggaggcgagcagtct
gagtgctgggtccggaacagacctgtcctgcggaactccgagtgcgcgttcggtttccgg
gggaggagggcggagaaggacttgcgcgcgacggttctcaccgctgctatggaggcgctg
gccatgggttcccgggcgctgcggctctggctggtcgcacccggtggcgggatcaaatgg
agatttatagcaacatcgtcagcttctcagctgtcaccgacagaattgacagaaatgcgg
aatgatctctttaataaagagaaagccaggcagttatcattaactccccgaactgagaag
atagaagttaagcatgttgggaaaactgaccccggtactgtcttcgtgatgaataaaaac
atttcaactccctacagttgtgccatgctaatttctggtgccttctgttatgacgtagtt
ttggatagcaaacttgatgagtggatgccaacaaaagagaacttacgttccttcacaaaa
gatgctcatgctttaatttataaagatcttccatttgaaactctggaagttgaagcaaaa
gtggcattggaaatatttcaacacagcaagtacaaagtagatttcatagaagagaaggca
tctcagaaccctgagagaatagtcaagctacacagaataggtgacttcattgatgtgagt
gagggccctcttattccaagaacaagtatttgtttccagtatgaagtatcagcagttcac
aatcttcaacccacccagccaagtctcatacgaagattccagggcgtgtctttacctgtt
cacttaagaccttcccaatttcagaaaatgggatcatcctttaactcaagcttgtccaac
tcacagcccatgggctgcatgcagtccaggacggctttgaatgagacacaaatttgtaaa
ctttcttaa

>gi568815577f:25539822_25812383|GENSCAN_predicted_peptide_4|353_aa
MARRSRHRLLLLLLRYLVVALGYHKAYGFSAPKDQQVVTAVEYQEAILACKTPKKTVSSR
LEWKKLGRSVSFVYYQQTLQGDFKNRAEMIDFNIRIKNVTRSDAGKYRCEVSAPSEQGQN
LEEDTVTLEVLGDVHVLAPAVPSCEVPSSALSGTVVELRCQDKEGNPAPEYTWFKDGIRL
LENPRLGSQSTNSSYTMNTKTGTLQFNTVSKLDTGEYSCEARNSVGYRRCPGKRMQVDDL
NISGIIAAVVVVALVISVCGLGVCYAQRKGYFSKRRKRDGSYAQGFALCVYFHSWELKAT
SKEMPNGWSPQVCTTGFAWLSIASQRLSPGTSTLQYPLSHNVNLSSSKGSFSL

>gi568815577f:25539822_25812383|GENSCAN_predicted_CDS_4|1062_bp
atggcgaggaggagccgccaccgcctcctcctgctgctgctgcgctacctggtggtcgcc
ctgggctatcataaggcctatgggttttctgccccaaaagaccaacaagtagtcacagca
gtagagtaccaagaggctattttagcctgcaaaaccccaaagaagactgtttcctccaga
ttagagtggaagaaactgggtcggagtgtctcctttgtctactatcaacagactcttcaa
ggtgattttaaaaatcgagctgagatgatagatttcaatatccggatcaaaaatgtgaca
agaagtgatgcggggaaatatcgttgtgaagttagtgccccatctgagcaaggccaaaac
ctggaagaggatacagtcactctggaagtattaggtgatgtgcatgtattggctccagca
gttccatcatgtgaagtaccctcttctgctctgagtggaactgtggtagagctacgatgt
caagacaaagaagggaatccagctcctgaatacacatggtttaaggatggcatccgtttg
ctagaaaatcccagacttggctcccaaagcaccaacagctcatacacaatgaatacaaaa
actggaactctgcaatttaatactgtttccaaactggacactggagaatattcctgtgaa
gcccgcaattctgttggatatcgcaggtgtcctgggaaacgaatgcaagtagatgatctc
aacataagtggcatcatagcagccgtagtagttgtggccttagtgatttccgtttgtggc
cttggtgtatgctatgctcagaggaaaggctacttttcaaaaaggaggaagcgggatggg
tcttatgcccaaggatttgcactttgtgtttacttccattcctgggaactaaaagcaaca
tcaaaagaaatgcctaatggctggagcccacaggtgtgcaccacaggatttgcctggctt
tcaatagcatctcaacgtttatctccgggaacttccaccctccagtaccctctcagtcac
aacgtcaatctctccagttccaaaggctccttttccctctaa

>gi568815577f:25539822_25812383|GENSCAN_predicted_peptide_5|122_aa
MGNKEEKGTVVRISMILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDK
IREYKSKRQTSGGPVDASSEYQQELERELFKLKQMFGNADMNTFPTFKFEDPKFEVIEKP
QA

>gi568815577f:25539822_25812383|GENSCAN_predicted_CDS_5|369_bp
atggggaataaggaggagaagggaactgtggtcagaatcagcatgattcttcagaggctc
ttcaggttctcctctgtcattcggtcagccgtctcagtccatttgcggaggaacattggt
gttacagcagtggcatttaataaggaacttgatcctatacagaaactctttgtggacaag
attagagaatacaaatctaagcgacagacatctggaggacctgttgatgctagttcagag
tatcagcaagagctggagagggagctttttaagctcaagcaaatgtttggtaatgcagac
atgaatacatttcccaccttcaaatttgaagatcccaaatttgaagtcatcgaaaaaccc
caggcctga

>gi568815577f:25539822_25812383|GENSCAN_predicted_peptide_6|683_aa
MSQMIKLYLRKIKLHVFSQLICSKSDCIDVTPSATRVKSTFIVSIIHHYHRVPREHMIAS
DMIRKTGEGNKRVSILFLGLRQTPRSTNVEVSCDPGPGREGPQDTELLSPPSKVPSCQSL
RRHHLRSTSGPGSAPTRLPAIAMHYGPPFQSVDAHRTGSVSETVCDRTGLGETEAKQEEE
VEGPWDLTLLVAGAAGLTRRDAARGALAAAVLSRLWSAGGGDRADSGVAMTKREAEELIE
IEIDGTEKAECTEESIVEQTYAPAECVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQ
DIQLDPERSLFDQGVKTDGTVQLSVQVISYQGIEPKLNILEIVKPADTVEVVIDPDAHHA
ESEAHLVEEAQVITLDGTKHITTISDETSEQVTRWAAALEGYRKEQERLGIPYDPIQWST
DQVLHWVVWVMKEFSMTDIDLTTLNISGRELCSLNQEDFFQRVPRGEILWSHLELLRKYV
LASQEQQMNEIVTIDQPVQIIPASVQSATPTTIKVINSSAKAAKVQRAPRISGEDRSSPG
NRTGNNGQIQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNY
EKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAELNRLVTECEQKKLAKMQL
HGIAQPVTAVALATASLQTEKDN

>gi568815577f:25539822_25812383|GENSCAN_predicted_CDS_6|2052_bp
atgagccagatgataaaactgtatctaagaaagattaagctgcacgtattctcacagtta
atttgctctaagtctgactgcatagatgttactccttctgcaacacgggtaaaatccact
ttcattgtttcaattatccaccattaccatcgggtgccacgagagcatatgatagcgtct
gacatgatcagaaagactggggaaggcaacaagagggtatcgatcttatttctgggtcta
cggcaaactccaaggtctacaaacgtagaggtcagctgtgaccccgggccaggccgtgaa
ggtccccaggacacagagctgctctctcctcctagtaaagtcccgagctgccaaagcctc
cgccgccaccacctccgctctacttccggccctggctccgcccccacacgcctacccgcc
atcgcaatgcattatgggccgccgtttcagtcggtcgacgctcaccggacaggaagcgtc
tcggagacagtctgcgaccggacgggtctaggtgagacagaagccaaacaggaggaggaa
gtggaggggccctgggacctcacacttctagtcgcgggagctgcaggtcttacccggaga
gacgctgcacgtggagccctcgccgctgccgttctcagccggctctggagtgcgggcggg
ggcgacagggccgattccggagtggccatgactaaaagagaagcagaggagctgatagaa
attgagattgatggaacagagaaagcagagtgcacagaagaaagcattgtagaacaaacc
tacgcgccagctgaatgtgtaagccaggccatagacatcaatgaaccaataggcaattta
aagaaactgctagaaccaagactacagtgttctttggatgctcatgaaatttgtctgcaa
gatatccagctggatccagaacgaagtttatttgaccaaggagtaaaaacagatggaact
gtacagcttagtgtacaggtaatttcttaccaaggaattgaaccaaagttaaacatcctt
gaaattgttaaacctgcggacactgttgaggttgttattgatccagatgcccaccatgct
gaatcagaagcacatcttgttgaagaagctcaagtgataactcttgatggcacaaaacac
atcacaaccatttcagatgaaacttcagaacaagtgacaagatgggctgctgcactggaa
ggctataggaaagaacaagaacgccttgggataccctatgatcccatacagtggtccaca
gaccaagtcctgcattgggtggtttgggtaatgaaggaattcagcatgaccgatatagac
ctcaccacactcaacatttcggggagagaattatgtagtctcaaccaagaagattttttt
cagcgggttcctcggggagaaattctctggagtcatctggaacttctccgaaaatatgta
ttggcaagtcaagaacaacagatgaatgaaatagttacaattgatcaacctgtgcaaatt
attccagcatcagtgcaatctgctacacctactaccattaaagttataaatagtagtgcg
aaagcagccaaagtacaaagagcgccgaggatttcaggagaagatagaagctcacctggg
aacagaacaggaaacaatggccaaatccaactatggcagtttttgctagaacttcttact
gataaggacgctcgagactgcatttcttgggttggtgatgaaggtgaatttaagctaaat
cagcctgaactggttgcacagaaatggggacagcgtaaaaataagcctacgatgaactat
gagaaactcagtcgtgcattaagatattattacgatggggacatgatttgtaaagttcaa
ggcaagagatttgtgtacaagtttgtctgtgacttgaagactcttattggatacagtgca
gcggagttgaaccgtttggtcacagaatgtgaacagaagaaacttgcaaagatgcagctc
catggaattgcccagccagtcacagcagtagctctggctactgcttctctgcaaacggaa
aaggataattga

>gi568815577f:25539822_25812383|GENSCAN_predicted_peptide_7|91_aa
MNTPEGRNSEHIRTSEGTNSGHAAFKNCNTARVHGFMLEVGKTKNPPIPDTFWRPRRDFC
LSLSGETIAYRQANSGAKYWAPVSQLKVTGK

>gi568815577f:25539822_25812383|GENSCAN_predicted_CDS_7|276_bp
atgaacacaccggaaggaagaaactcggaacacatccgaacatcagaaggaacaaactcc
ggacacgccgcctttaagaactgtaacaccgccagggtccacggcttcatgcttgaagtt
ggtaagaccaagaacccaccaattccggacacgttttggcgaccacgaagggacttttgc
ctgtcgctgagcggtgagaccatcgcctatcgccaagcaaattcgggggctaaatactgg
gcacctgtcagccagttaaaagtgaccggcaagtga

>gi568815577f:25539822_25812383|GENSCAN_predicted_peptide_8|212_aa
MSTHIDEDRSSLLSLWIRMLISSKNTLTDPPRNVSAYPLTRSITPKMQHQVKGRRVFTTE
SCISGEFRKQKKHFAKRPNVCRSAVCRPEGHSEKYGCGRGPQKPNCRRNLSGKVSAAGVL
NNISGAEKPHWPFLQWWGNAGRKKFAGQVPWPVPVILALWEIKADPSHFPMKLCLILLSE
HSEPYQHGPLASRAVGGAEGLNTPAFSQAEFQ

>gi568815577f:25539822_25812383|GENSCAN_predicted_CDS_8|639_bp
atgtccacccatattgatgaggacagatcctctttactcagtctgtggattcgaatgcta
atctcttccaaaaacactctcacagacccacccagaaatgtttctgcgtatcccttaacc
cggtcaataacacctaaaatgcagcaccaagtcaaagggagaagagtgttcacaacggag
agctgcatttctggtgaattcaggaagcaaaagaaacatttcgcaaagagaccgaatgta
tgcagatctgctgtgtgcagacctgaaggccacagtgaaaaatatgggtgtgggcgtggt
ccacagaaacccaactgtcgcagaaacctgagtggtaaagtgtcagcagcaggagttctg
aataacatttcaggggcagaaaaaccgcactggcctttccttcaatggtggggaaatgca
ggacgaaagaaatttgcaggccaggtgccgtggcccgtgcccgtaatcctagcactttgg
gagatcaaggcagacccatctcatttccccatgaaactctgcctcatacttctgtctgag
cactctgagccctaccagcatggtcctttggcatccagagctgttggtggcgctgaagga
ctgaacactcctgctttttctcaggcagaattccaatga