GENSCAN 1.0	Date run:  4-Nov-116	Time: 12:08:53

Sequence gi568815597r:19875704_20078773 : 203070 bp : 43.64% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   6811   7031  221  0  2   65   76   454 0.708  40.00
 1.02 Intr +  14682  14830  149  0  2   68   78    96 0.690   6.48
 1.03 Intr +  18665  18777  113  0  2   71   96    66 0.993   5.80
 1.04 Intr +  21837  21959  123  2  0  108   76   185 0.983  20.08
 1.05 Intr +  28570  28695  126  0  0   73   13   122 0.596   4.08
 1.06 Intr +  29188  29284   97  0  1   70   92    81 0.987   6.28
 1.07 Intr +  30729  30913  185  1  2   36   95    83 0.904   3.31
 1.08 Term +  31867  32043  177  0  0  108   41   230 0.950  17.99
 1.09 PlyA +  34709  34714    6                               1.05

 2.05 PlyA -  34949  34944    6                               1.05
 2.04 Term -  44746  44604  143  2  2   72   54   240 0.986  17.09
 2.03 Intr -  46701  46595  107  2  2   68   78   136 0.850  10.46
 2.02 Intr -  47052  46914  139  1  1  142   81   288 0.999  33.02
 2.01 Init -  47856  47817   40  0  1   41  106    50 0.886   0.67
 2.00 Prom -  48776  48737   40                              -6.66

 3.00 Prom +  48873  48912   40                              -5.46
 3.01 Init +  49649  49707   59  1  2   39  105     2 0.772  -2.22
 3.02 Term +  50699  50900  202  2  1   59   50   383 0.831  28.46
 3.03 PlyA +  52371  52376    6                               1.05

 4.13 PlyA -  53279  53274    6                               1.05
 4.12 Term -  55190  55081  110  0  2   31   47    98 0.646  -1.33
 4.11 Intr -  57401  57311   91  2  1   48  101   171 0.716  13.97
 4.10 Intr -  59712  59644   69  0  0   63   80    52 0.321   1.28
 4.09 Intr -  76766  76676   91  1  1   74   89    53 0.293   4.00
 4.08 Intr -  78575  78403  173  2  2   50   21   111 0.062  -0.66
 4.07 Intr -  98723  98605  119  0  2   87   75    13 0.249   0.08
 4.06 Intr -  99278  99237   42  0  0   92   81    23 0.334   0.21
 4.05 Intr - 102418 102312  107  0  2   39   83    87 0.739   3.16
 4.04 Intr - 102821 102677  145  0  1   87   85   151 0.982  14.04
 4.03 Intr - 106210 106179   32  0  2  118   41    12 0.091  -2.73
 4.02 Intr - 108186 107993  194  0  2  -12   81   150 0.219   2.59
 4.01 Init - 108907 108746  162  1  0   88   80   149 0.628  11.88
 4.00 Prom - 109425 109386   40                              -3.06

 5.02 PlyA - 109514 109509    6                               1.05
 5.01 Sngl - 117390 116875  516  0  0   21   43   209 0.496   5.74
 5.00 Prom - 117525 117486   40                              -4.96

 6.00 Prom + 122898 122937   40                              -2.26
 6.01 Init + 130903 131103  201  0  0   60   86    95 0.091   5.38
 6.02 Term + 136950 137132  183  2  0   39   38   123 0.222  -0.06
 6.03 PlyA + 142924 142929    6                               1.05

 7.03 PlyA - 143621 143616    6                               1.05
 7.02 Term - 149191 149015  177  1  0   37   49   133 0.659   1.99
 7.01 Init - 151557 151498   60  0  0   74   82    30 0.510   2.25
 7.00 Prom - 153817 153778   40                               0.34

 8.00 Prom + 177692 177731   40                              -2.56
 8.01 Init + 198320 198362   43  1  1   72   69    58 0.254   2.88
 8.02 Term + 201058 201173  116  2  2   86   33   108 0.324   3.83
 8.03 PlyA + 201216 201221    6                               1.05

 9.02 PlyA - 201385 201380    6                              -1.75
 9.01 Term - 202282 202099  184  0  1   72   49   154 0.739   6.92

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl + 122371 122628  258  0  0   72   53   165 0.889   6.53


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:19875704_20078773|GENSCAN_predicted_peptide_1|396_aa
MSRKQAAKSRPGSGSRKAEAERKRDERAARRALAKERRNRPESGGGGGCEEEFVSFANQL
QALGLKLREVPGDGNCLFRALGDQLEGHSRNHLKHRQETVDYMIKQREDFEPFVEDDIPF
EKHVASLAKPGTFAGNDAIVAFARNHQLNVVIHQLNAPLWQIRGTEKSSVRELHIAYRYG
EHYDSVRRINDNSEAPAHLQTDMLHQDESNKREKIKTKGMDSEDDLRDEVEDAVQKVCNA
TGCSDFNLIVQNLEAENYNIESAIIAVLRMNQGKRNNAEENLEPSGRVLKQCGPLWEEGG
SGARIFGNQGLNEGRTENNKAQASPSEENKANKNQLAKVTNKQRREQQWMEKKKRQEERH
RHKALESRGSHRDNNRSEAEANTQVTLVKTFAALNI

>gi568815597r:19875704_20078773|GENSCAN_predicted_CDS_1|1191_bp
atgtcccgaaagcaggcggcgaagagccggccgggcagcggcagccggaaagccgaggcc
gagcgcaagcgggacgagcgggcggcgcgccgggccctggccaaggagcggcggaatcgg
ccggagtctggcggcggcggcggctgcgaggaggagttcgtcagcttcgccaaccagctg
caggccctggggctgaagctgcgggaggtgccgggggacggcaattgcttgttcagagct
cttggtgatcaattggagggacactcacgaaatcatctcaagcacagacaggagacagtg
gactacatgataaagcagcgggaagattttgaaccctttgtagaagatgacattcctttt
gagaagcatgtggccagtttggcaaagcctggtacttttgctggcaatgatgcaattgta
gcctttgcaagaaatcatcagttgaatgtagtgattcatcaacttaatgcccctttgtgg
cagattcgtggtacagagaaaagcagcgtgagggagttacacatcgcatatcggtatgga
gagcactacgacagtgttcggaggatcaatgacaactcagaggcacctgcacatctccag
acggatatgcttcatcaagatgaatcaaataaaagagaaaagatcaagacaaagggaatg
gactctgaagacgacctgagagatgaagtagaggatgctgtccagaaagtttgtaatgca
actggatgttcagattttaatttaatagtccagaacctggaagctgaaaattataatatt
gaatctgcaataattgccgtgcttcggatgaaccaagggaagagaaataatgcagaagag
aatcttgagcccagtggtcgagtgctgaagcagtgtggccctttgtgggaggagggtggc
agtggtgccagaatctttggaaatcagggcttaaatgaaggcaggaccgaaaacaataag
gcacaggccagccctagtgaagaaaacaaagcaaataaaaaccagctcgcaaaggtcaca
aacaaacagaggcgagaacagcagtggatggagaagaagaagcggcaggaggagaggcac
cgccacaaagccctggagagcagaggtagccacagggacaataacagaagcgaagcagag
gcgaacacgcaggtcaccttggtgaagaccttcgccgctctcaacatctga

>gi568815597r:19875704_20078773|GENSCAN_predicted_peptide_2|142_aa
MKSPHVLVFLCLLVALVTGNLVQFGVMIEKMTGKSALQYNDYGCYCGIGGSHWPVDQTDW
CCHAHDCCYGRLEKLGCEPKLEKYLFSVSERGIFCAGRTTCQRLTCECDKRAALCFRRNL
GTYNRKYAHYPNKLCTGPTPPC

>gi568815597r:19875704_20078773|GENSCAN_predicted_CDS_2|429_bp
atgaaatctccccacgtgctggtgttcctttgcctcctggtggctctggtcaccgggaac
ctggttcagtttggggtgatgatcgagaagatgacaggcaagtccgccctgcagtacaac
gactatggctgttactgcggcatcggtggctcccactggccggtggaccagactgactgg
tgctgccacgcccacgactgctgctacgggcgtctggagaagctgggctgtgagcccaaa
ctggaaaagtatcttttctctgtcagcgaacgtggcattttctgcgccggcaggaccacc
tgccagcggctgacctgcgagtgtgacaagagggctgccctctgctttcgccgcaacctg
ggcacctacaaccgcaaatatgcccattatcccaacaagctgtgcaccgggcccaccccg
ccctgctga

>gi568815597r:19875704_20078773|GENSCAN_predicted_peptide_3|86_aa
MLGSSHPVSEKTCGEKGSESLEATTIIIIIITISIIIVNITIITITIIVITINITIIITI
AITITIFITINIIYMVFICVPTQISH

>gi568815597r:19875704_20078773|GENSCAN_predicted_CDS_3|261_bp
atgctgggctcttctcaccctgtttcagagaagacttgcggggagaaggggtcagagagc
ttagaagccaccaccatcatcatcatcataatcactatcagtatcatcatcgtcaatatt
accatcatcaccatcaccatcattgtcatcaccatcaatattaccatcatcatcaccatt
gccatcaccatcaccatcttcatcaccatcaatatcatttatatggtttttatctgtgtc
cctacccaaatctcacattga

>gi568815597r:19875704_20078773|GENSCAN_predicted_peptide_4|444_aa
MPEPPLSAAVGSCAARASPTSAIPCSMAPSPIDHPRAEECGTQRSTCRQLHLRQVGSFTP
EPVRPRTHQKEETPNTSEHQKEQTPDTPPLRTVTLTVRDRGFILEVSETKNPPIPVTVCV
TTYHMMSFTSLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDATDRCC
VTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCGNSSSYWPAGRKQEGFRWEIPTWTSYS
PTCFSNNTHLGCWVWIPSQRHPAQGTQMVKEVDLRLSFHLLGCSTRLNPSSLAILVISVI
GFLFGEQQDLHQTPGVSVTEFLTVWQWFSNLSKHRNYTEPCKKYFQGPIPGVSNSAPCIW
TGIVTCFDQMDVAKVLLQDNDDDGGGDDDDDGGGVSGNDCDGDDSDSNVRQGPNEPYPDF
IACLKDAAQKAILDAHVRETIVQL

>gi568815597r:19875704_20078773|GENSCAN_predicted_CDS_4|1335_bp
atgcctgagcctcccctctccgccgccgtgggctcctgcgcggcccgagcctcccccacg
agcgccatcccctgctccatggcgcccagtcccattgaccacccaagggctgaggagtgt
ggcacacagcgcagcacttgcaggcagctccacctgcggcaggtcggcagcttcactcct
gagccagtgagaccacgaacccaccagaaggaagaaactccaaacacatctgaacatcag
aaggaacaaactccggacacgccgcctttaagaactgtaacactcactgtgagggaccgc
ggcttcattcttgaagtcagtgagaccaagaacccaccaattccggtcacagtatgtgtc
accacctatcacatgatgtcatttactagcctactgcaggcccatgggaatttggtgaat
ttccacagaatgatcaagttgacgacaggaaaggaagccgcactcagttatggcttctac
ggctgccactgtggcgtgggtggcagaggatcccccaaggatgcaacggatcgctgctgt
gtcactcatgactgttgctacaaacgtctggagaaacgtggatgtggcaccaaatttctg
agctacaagtttagcaactcggggagcagaatcacctgtggcaatagcagctcctactgg
cctgctgggagaaagcaggaagggttccgctgggaaattcccacctggaccagctacagc
cccacctgtttctccaataacacgcatctgggctgctgggtgtggatcccttcacaaagg
caccctgcacaggggacacagatggtcaaggaggtggatttgagactgagttttcatctc
cttggctgcagcacccgattaaatccttcttccttggcaatacttgtcatctcagtgatt
ggctttctgtttggcgagcagcaggacctacatcaaacccctggtgtttcagtaacagaa
tttctaacagtgtggcagtggttctccaacttgagcaagcatcggaattacacggagcct
tgtaaaaaatatttccagggcccaatccctggagtttctaattcagctccttgcatctgg
actggcattgtaacttgctttgatcaaatggatgtggcaaaagtgctgctgcaggataat
gatgatgatggtggtggtgatgatgatgatgatggtggtggtgttagtggtaatgattgt
gatggtgatgacagtgatagtaatgtcagacagggccctaatgaaccttacccagacttc
attgcctgcctaaaagatgcagctcaaaaggctatcttggacgcacatgtccgagagaca
attgtccaactatag

>gi568815597r:19875704_20078773|GENSCAN_predicted_peptide_5|171_aa
MRQKIKKDIQDLNAALDQEDLIDIYRTLHHKSRDYTFFSVPHSTYSKIDHIIGNKTLLSR
CKRIEIITVSLSDHSAIKLELRIKKLSQNCTTTWKLNNLLLNDYWVTNKIKAEITKFFET
SEKKETTYQNLWDTFKAVCKGKFVTLNAHIRKQETSKIGTLILQLKELEKQ

>gi568815597r:19875704_20078773|GENSCAN_predicted_CDS_5|516_bp
atgagacagaaaattaaaaaggacattcaggacttgaacgcagctctggaccaagaggac
ctaatagatatctacagaaccctccaccacaaatcaagagactatacgttcttctcagta
ccacatagcacttattctaaaatcgaccacataattggaaataaaacactcctcagcaga
tgcaaaagaatagaaatcataacagtcagcctctcagaccatagtgcaataaaattagaa
ctaaggattaagaaactcagtcaaaactgcacaactacatggaaactgaacaaccttctc
ctgaatgactactgggtaaccaacaaaattaaagcagaaataacgaagttctttgaaacc
agtgagaaaaaagagacaacataccagaatctctgggacacatttaaagcagtgtgtaaa
ggcaaatttgtaacactaaatgcccacatcagaaagcaggaaacatctaaaattggcacc
cttatattacaattaaaagaactagagaagcaatag

>gi568815597r:19875704_20078773|GENSCAN_predicted_peptide_6|127_aa
MSELLFTIATKRIKYPGIQLTRDVKDLFKENYKPLLNEIKEDTNKWKNIPCSWIGIMNIM
KMAIMPKFCGLWGDPTVMVPPDILMESLCGSLDAMAPLGIALVEAVCSGPTPVAVLFLGP
KALWDIL

>gi568815597r:19875704_20078773|GENSCAN_predicted_CDS_6|384_bp
atgagtgaactcctattcacaattgctacaaagagaataaaatacccaggaatccaactt
acaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaacgaaataaaa
gaggacacaaataaatggaagaacattccatgctcatggataggaataatgaatatcatg
aaaatggccataatgcccaagttttgtggtctttggggtgaccccactgtcatggttcca
ccagacatccttatggagtctctctgtggcagtcttgatgccatggccccactgggcatt
gccttagtggaggctgtctgcagcggccccacccctgtggcagttctcttcctgggccct
aaggctctctgggacatactttga

>gi568815597r:19875704_20078773|GENSCAN_predicted_peptide_7|78_aa
MNNIDRPLARFTKKRREKIQMQKTRLTKSRIIKIKTFRKISIEGTYLKIIKAIYDKPTVN
IILNKEKLKAFPLRTGTR

>gi568815597r:19875704_20078773|GENSCAN_predicted_CDS_7|237_bp
atgaacaatattgatagaccattagcaagattcaccaagaaaagaagagagaagatccaa
atgcagaaaactcgtttgacaaaatcaagaatcataaagattaaaaccttcagaaaaatc
agcatagaagggacatacctcaagataataaaagccatctatgacaagcccacagtcaac
attatactgaacaaggaaaagttgaaagcatttcccctgagaactggaacaagataa

>gi568815597r:19875704_20078773|GENSCAN_predicted_peptide_8|52_aa
MTVSAMKGKNRVTLGNARVDSISDEFYNIPETGKLPVERRIMEDFPEEEDLM

>gi568815597r:19875704_20078773|GENSCAN_predicted_CDS_8|159_bp
atgacggtcagtgccatgaaggggaaaaacagggtgaccttgggaaatgccagagtggac
agcatatcagatgagttctataacattccagagacaggtaagctccctgtggaaagaagg
atcatggaagacttcccggaggaggaggacttgatgtag

>gi568815597r:19875704_20078773|GENSCAN_predicted_peptide_9|61_aa
XHSLDELIRVQGFSSYFYAGIRGCPGQRSLALALTQQTMLNEGMTEYSNQEKAQCQIQDP
T

>gi568815597r:19875704_20078773|GENSCAN_predicted_CDS_9|186_bp
nnccactctctggatgagctcattcgagttcagggatttagctcttatttctatgcaggc
atccgggggtgtcccggacagagaagtttggccctagctttgactcaacaaacaatgctt
aatgaaggaatgactgaatacagcaaccaggagaaagcacaatgtcagatccaagatcca
acgtag