GENSCAN 1.0	Date run:  4-Nov-116	Time: 12:06:36

Sequence gi568815584f:94011683_94216524 : 204842 bp : 44.20% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   4783   4851   69  0  0   66   87    63 0.098   3.07
 1.02 Intr +  12121  12272  152  0  2   51   87   133 0.009   8.46
 1.03 Intr +  16680  16788  109  0  1   15   97    21 0.012  -4.01
 1.04 Intr +  16948  17118  171  0  0   79   42    78 0.079   2.44
 1.05 Intr +  18936  19046  111  2  0   53   75    51 0.298   0.88
 1.06 Intr +  25063  25167  105  0  0   52   20   107 0.464   0.71
 1.07 Intr +  25698  25793   96  2  0  100   78    73 0.993   7.71
 1.08 Intr +  27281  27399  119  1  2  116   89   163 0.996  18.46
 1.09 Intr +  32289  32373   85  0  1  113   68   125 0.996  12.82
 1.10 Intr +  32883  33098  216  2  0   39   63   379 0.853  29.20
 1.11 Term +  34034  34240  207  1  0  101   38   356 0.998  29.24
 1.12 PlyA +  34814  34819    6                              -0.45

 2.09 PlyA -  36629  36624    6                               1.05
 2.08 Term -  39780  39509  272  1  2   21   36   256 0.638   9.35
 2.07 Intr -  41445  41316  130  0  1   90   98   244 0.999  25.87
 2.06 Intr -  43502  43314  189  2  0   93   70   238 0.995  22.28
 2.05 Intr -  46215  46140   76  2  1   92   91    51 0.999   5.32
 2.04 Intr -  48931  48416  516  0  0   88   89   554 0.999  47.57
 2.03 Intr -  49384  49231  154  2  1  101   90   155 0.999  16.13
 2.02 Intr -  50939  50415  525  0  0   81   94   400 0.583  32.82
 2.01 Init -  68060  67343  718  2  1  106  110   570 0.995  56.03
 2.00 Prom -  72918  72879   40                              -3.16

 3.00 Prom +  73820  73859   40                              -4.46
 3.01 Init +  76613  76621    9  1  0   74  115     6 0.200   2.12
 3.02 Intr +  78186  78275   90  2  0   77   83    44 0.194   2.99
 3.03 Intr +  83154  83217   64  2  1   12  106    96 0.191   2.09
 3.04 Intr +  85124  85283  160  0  1   63   94    69 0.489   4.05
 3.05 Intr +  88718  88830  113  2  2   63   62    15 0.548  -3.58
 3.06 Intr +  89057  89089   33  0  0  101  105    40 0.926   5.19
 3.07 Intr +  90021  90293  273  1  0   47   92   301 0.647  23.91
 3.08 Intr +  92043  92071   29  1  2   94   75    26 0.156  -0.27
 3.09 Intr +  93323  93352   30  1  0   68  115    24 0.113   1.43
 3.10 Intr +  99977 100091  115  1  1   75   92    35 0.224   2.62
 3.11 Intr + 101024 101130  107  0  2  107   78    30 0.620   3.83
 3.12 Intr + 103096 103198  103  0  1   91  105   -23 0.647  -0.55
 3.13 Intr + 104099 104260  162  0  0  112  106   227 0.971  26.85
 3.14 Term + 104760 104845   86  1  2  112   36   134 0.985   8.42
 3.15 PlyA + 104988 104993    6                               1.05

 4.07 PlyA - 105949 105944    6                               1.05
 4.06 Term - 112853 112689  165  2  0  100   49   109 0.761   6.12
 4.05 Intr - 113615 113533   83  0  2   45   92    12 0.271  -3.34
 4.04 Intr - 116310 116164  147  1  0  133   61    50 0.756   7.01
 4.03 Intr - 116993 116832  162  0  0  113  106   201 0.994  24.35
 4.02 Intr - 117609 117580   30  1  0  108  107     6 0.856   2.60
 4.01 Init - 128059 128002   58  1  1   77   91    27 0.321   3.37
 4.00 Prom - 135501 135462   40                              -2.56

 5.03 PlyA - 136258 136253    6                               1.05
 5.02 Term - 138550 137885  666  1  0   37   42   211 0.346   5.23
 5.01 Init - 142399 142358   42  1  0   34   99    57 0.408   1.82
 5.00 Prom - 142906 142867   40                              -4.26

 6.00 Prom + 143044 143083   40                              -6.06
 6.01 Init + 162811 162900   90  0  0  102   91   154 0.888  17.59
 6.02 Intr + 164372 164445   74  1  2   60   68    83 0.472   1.70
 6.03 Intr + 186059 186111   53  2  2  115   84   -26 0.018  -1.75
 6.04 Term + 190108 190232  125  2  2   85   37   101 0.248   3.25
 6.05 PlyA + 190621 190626    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  14798  14696  103  2  1   76   72   108 0.850   6.40


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815584f:94011683_94216524|GENSCAN_predicted_peptide_1|479_aa
MPGPALLLAQEQPGHLGGLCSQAQGISTKGGQTWWGNSKGFMTIWAIREGLMDNDPGFER
QVVSDKWAFQKEQRRNILGKYSIFFTFLFLHHWAKLEEGRPVEDTKTLGKAPSGHLCQAC
AGHCDTDEKDKVPARCRSSLPAGQDSWTQAVSELQVMPKRPKDIGNTWSSREGTCSRLNN
GPNDVHVLIPTTCDYVTVARGTWQVVHEDALLPCAPRAQISDTFSGISMYQCHTLRPLLS
ETSFNLISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDGNCFYRALGYSYLE
SLLGKSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNALRAGRAQFYSVVELVEKDGSV
SSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATEC
DHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTSHYNILYAADKH

>gi568815584f:94011683_94216524|GENSCAN_predicted_CDS_1|1440_bp
atgcccggcccagccctgctcttggctcaggagcagccaggccacttgggaggcctgtgc
tcccaggctcaagggatcagcaccaaaggaggacagacatggtggggaaattcaaaggga
ttcatgaccatctgggcaatccgggaaggcctcatggacaatgacccaggatttgaaaga
caggtggtatctgacaagtgggcattccagaaggagcaaagaaggaatatccttggaaaa
tacagcatcttctttactttcctgtttctacatcactgggctaagcttgaggaagggcgc
cccgtggaagacacaaagacacttgggaaggcccccagtgggcacctttgtcaggcctgt
gctgggcactgtgacactgatgagaaagacaaggtgcctgcccgctgtaggagctcactg
cctgctggccaagacagctggacacaagcagtgtctgagctacaggtcatgcctaagagg
cctaaggacattgggaacacatggagcagcagagaagggacatgtagcaggctgaacaat
ggccccaatgatgtccacgtcctaatccccacaacctgtgactatgttaccgtggcgaga
gggacttggcaggtggtgcatgaagatgccctcctgccctgtgctccccgagctcagatc
tctgacaccttctctggcatctccatgtaccagtgccacacactgcggcctcttctgagt
gaaacatctttcaacctaatatcagaaaaatgtgacattctatccattcttcgggaccat
cctgaaaacaggatttaccggaggaaaatcgaggaactcagcaaaaggttcaccgccatc
cgcaagaccaaaggggatgggaactgcttctacagggccttgggctattcctacctggag
tccctgctggggaagagcagggagatcttcaagttcaaagaacgcgtactgcagacccca
aatgaccttctggctgctggctttgaggagcacaagttcagaaacttcttcaatgctctg
agggccgggcgggcgcagttttacagtgtggtggaactggtagagaaggatggctcagtg
tccagcctgctgaaggtgttcaacgaccagagtgcctcggaccacatcgtgcagttcctg
cgcctgctcacgtcggccttcatcaggaaccgagcagacttcttccggcacttcattgat
gaggagatggacatcaaagacttctgcactcacgaagtagagcccatggccacggagtgt
gaccacatccagatcacggcgttgtcgcaggccctgagcattgccctgcaagtggagtac
gtggacgagatggataccgccctgaaccaccacgtgttccctgaggccgccaccccttcc
gtttacctgctctataaaacatcccactacaacatcctttatgcagccgataaacattga

>gi568815584f:94011683_94216524|GENSCAN_predicted_peptide_2|859_aa
MKLKDTKSRPKQSSCGKFQTKGIKVVGKWKEVKIDPNMFADGQMDDLVCFEELTDYQLVS
PAKNPSSLFSKEAPKRKAQAVSEEEEEEEGKSSSPKKKIKLKKSKNVATEGTSTQKEFEV
KDPELEAQGDDMVCDDPEAGEMTSENLVQTAPKKKKNKGKKGLEPSQSTAAKVPKKAKTW
IPEVHDQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETG
SGKTLAFAIPMIHAVLQWQKRNAAPPPSNTEAPPGETRTEAGAETRSPGKAEAESDALPD
DTVIESEALPSDIAAEARAKTGGTVSDQALLFGDDDAGEGPSSLIREKPVPKQNENEEEN
LDKEQTGNLKQELDDKSATCKAYPKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAI
LVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKG
HFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKLDLLMQ
KIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCI
KRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVI
HYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTK
YMDVVKERIRLARQIEKSEYRNFQACLHNSWIEQAAAALEIELEEDMYKGGKADQQEERR
RQKQMKVLKKELRHLLSQPLFTESQKTKYPTQSGKPPLLVSAPSKSESALSCLSKQKKKK
TKKPKEPQPEQPQPSTSAN

>gi568815584f:94011683_94216524|GENSCAN_predicted_CDS_2|2580_bp
atgaagttgaaggacacaaaatcaaggccaaagcagtcaagctgtggcaaatttcagaca
aagggaatcaaagttgtgggaaaatggaaggaagtgaagattgacccaaatatgtttgca
gatggacagatggatgacttggtgtgctttgaggaattgacagattaccagttggtctcc
cctgccaagaatccctccagtctcttctcaaaggaagcacccaagagaaaggcacaagct
gtttcagaagaagaggaggaggaggagggaaagtctagctcaccaaagaaaaagatcaag
ttgaagaaaagtaaaaatgtagcaactgaaggaaccagtacccagaaagaatttgaagtg
aaagatcctgagctggaggcccagggagatgacatggtttgtgatgatccggaggctggg
gagatgacatcagaaaacctggtccaaactgctccaaaaaagaagaaaaataaagggaaa
aaagggttggagccttctcagagcactgctgccaaggtgcccaaaaaagcgaagacatgg
attcctgaagttcatgatcagaaagcagatgtgtcagcttggaaggacctgtttgttccc
aggccggttctccgagcactcagctttctaggcttctctgcacccacaccaatccaagcc
ctgaccttggcacctgccatccgtgacaaactggacatccttggggctgctgagacagga
agtgggaaaactcttgcctttgccatcccaatgattcatgcggtgttgcagtggcagaag
aggaatgctgcccctcctccaagtaacaccgaagcaccacctggagagaccagaactgag
gccggagctgagactagatcaccaggcaaggctgaagctgagtctgatgcattgcctgac
gatactgtaattgagagtgaagcactgcccagtgatattgcagccgaggccagagccaag
actggaggcactgtctcagaccaggcgttgctctttggtgacgatgatgctggtgaaggg
ccttcttccctgatcagggagaaacctgttcccaaacagaatgagaatgaggaggaaaat
cttgataaagagcagactggaaatctaaaacaggagttggatgacaaaagcgccacctgt
aaggcatatccaaagcgtcctctgcttggactggttctgactcccactcgagagctggcc
gtccaggtcaaacagcacattgatgctgtggccaggtttacaggaattaaaactgctatt
ttggttggtggaatgtccacgcagaaacagcagaggatgctgaaccgtcgtcctgagatt
gtggttgctactccaggccggctgtgggaattaattaaagaaaagcattatcatttgagg
aaccttcggcagctcaggtgcctggtagtggatgaggctgaccggatggttgagaaaggc
cattttgctgagctctcacagctgctagagatgctcaatgactcccaatacaacccaaag
agacaaacgcttgttttttctgccacactcaccctggtgcatcaggctcctgctcgaatc
cttcataagaagcacaccaagaaaatggataaaacagccaaacttgacctccttatgcag
aaaattggcatgaggggcaagcccaaggtcattgacctcacaaggaatgaggccacggtg
gagacgctaacagagaccaagatccattgtgagactgatgagaaagacttctacttgtac
tacttcctgatgcagtatccaggccgcagcttagtgtttgccaacagtatctcctgcatc
aaacgcctctctgggctcctcaaagtccttgatatcatgcccttgaccctgcatgcctgt
atgcaccagaagcagaggctcagaaacctggagcagtttgcccgtctggaagactgtgtt
ctcttggcaacagatgtggcagctcggggtctggatattcctaaagtccagcatgtcatc
cattaccaggtcccacgtacctcggagatttatgtccaccgaagtggtcgaactgctcga
gctaccaatgaaggcctcagtctgatgctcattgggcctgaggatgtgatcaactttaag
aagatttacaaaacgctcaagaaagatgaggatatcccactgttccccgtgcagacaaaa
tacatggatgtggtcaaggagcgaatccgtttagctcgacagattgagaaatctgagtat
cggaacttccaggcttgcctgcacaactcttggattgagcaggcagcagctgccctggag
attgagctggaagaagacatgtataagggaggaaaagctgaccagcaagaagaacgtcgg
agacaaaagcagatgaaggttctgaagaaggagctgcgccacctgctgtcccagccactg
tttacggagagccagaaaaccaagtatcccactcagtctggcaagccgcccctgcttgtg
tctgccccaagtaagagcgagtctgctttgagctgtctctccaagcagaagaagaagaag
acaaagaagccgaaggagccacagccggaacagccacagccaagtacaagtgcaaattaa

>gi568815584f:94011683_94216524|GENSCAN_predicted_peptide_3|457_aa
MQKGRVELSQKVSVWQGPFITLEFRQKVISGRLDDIEETPELKEIDRNTNWLTLVPGGMQ
SSLLMQLYSNQILNKVKTQPTGGSPRIRVEAHRGEGANHGKGEWMGLSHCQMFLPALRAQ
HNSGGPGMLCPVLQGAQPQGWAEETGRAAVAAVVGGVFPESTADPSSSSPQEDVREVWGT
PSHGANPKSPLPAVVAVGTVLVALSAMGFTSVGIAASSIAAKMMSTAAIANGGGVAAGSL
VAILQSVAWLYSSSHQEPLRKSTPDPKATELTRAGMEASALTSSAVTSVAKVVRVASGSA
VVLPLAALSPNISLLRPLLGALEASSFMLGSLTGTLFCNLEMGNRLRKWRGSQCGSTHRM
FFWFPARIATVVIGGVVAMAAVPMVLSAMGFTAAGIASSSIAAKMMSAAAIANGGGVASG
SLVATLQSLGATGLSGLTKFILGSIGSAIAAVIARFY

>gi568815584f:94011683_94216524|GENSCAN_predicted_CDS_3|1374_bp
atgcagaagggtagagtggagctcagtcagaaagtgtcggtatggcaaggaccattcata
actcttgagttccgacaaaaggtgatatctggaagattagacgatattgaggagacccct
gaactaaaggaaatagaccgcaacaccaattggctgactttggtcccaggagggatgcag
agttctttattaatgcagctttattcaaaccagatcctgaataaagtcaaaactcaacca
acaggtggaagtccaagaatccgagtggaggctcaccgaggcgaaggggccaaccatggg
aaaggagagtggatgggactcagccattgtcagatgttcctgccagccctgagagctcaa
cacaactcaggaggcccaggcatgctctgcccagtgctgcagggggcccagccacaaggc
tgggcagaggagacaggcagggctgctgtagcagctgtggtcggaggagtctttcctgag
agcacagcagacccctcctcctcatcgccccaggaggatgtcagggaagtctgggggact
ccgtcccatggggccaaccccaaatctccacttcccgcagttgtggctgtggggactgtg
ctcgtggcgctcagtgccatgggcttcacctcagtaggaatcgccgcatcctccatagca
gccaagatgatgtctacagcagccattgccaacgggggcggagttgctgctggcagtctg
gtggctattctgcagtcagtggcatggctgtacagctcctcccatcaagagccattaagg
aagagcacaccggacccgaaggccacggaattaacccgagcaggcatggaggcctctgct
ctcacctcatcagcagtgaccagtgtggccaaagtggtcagggtggcctctggctctgcc
gtagttttgcccctggctgccctgagccccaacatctctctcctcagacccttgctgggg
gcactggaggctagctccttcatgctggggtccctcactggcaccctgttttgcaacttg
gagatgggcaatcggcttagaaagtggaggggaagccagtgtggatctactcacagaatg
ttcttttggtttccagccaggattgctacagttgtgattggaggagttgtggccatggcg
gctgtgcccatggtgctcagtgccatgggcttcactgcggcgggaatcgcctcgtcctcc
atagcagccaagatgatgtccgcggcggccattgccaatgggggtggagttgcctcgggc
agccttgtggctactctgcagtcactgggagcaactggactctccggattgaccaagttc
atcctgggctccattgggtctgccattgcggctgtcattgcgaggttctactag

>gi568815584f:94011683_94216524|GENSCAN_predicted_peptide_4|214_aa
MGPQNNRTVTTISRLLSEAERAAAAAVGGALAVGAVPVVLSAMGFTGAGIAASSIAAKMM
SAAAIANGGGVSAGSLVATLQSVGAAGLSTSSNILLASVGSVLGACLGNSPSSSLPAEPE
AKEDEARENVPQDGLKAAFWVHTRHLIDHLVTYQEGRAGQKGTKTLSCGGKTADPVASKA
HAKTIAEGEEKVKPSALGEEQETILSPDLETCYP

>gi568815584f:94011683_94216524|GENSCAN_predicted_CDS_4|645_bp
atgggacctcagaataataggacagtcaccacaatttcaaggctgctctcagaggcagaa
cgggcagctgctgctgcagtgggaggagccctggcagtgggggctgtgcccgtggtgctc
agtgccatgggcttcactggggcaggaatcgccgcgtcctccatagcagccaagatgatg
tccgcagcagccattgccaacgggggtggtgtttctgcggggagcctggtggctactctg
cagtccgtgggggcagctggactctccacatcatccaacatcctcctggcctctgttggg
tcagtgttgggggcctgcttggggaattcaccttcttcttctctcccagctgaacccgag
gctaaagaagatgaggcaagagaaaatgtaccccaagatggtcttaaggcagccttctgg
gtgcacacaaggcatcttatagaccacttggtaacctatcaagaaggaagagctggccag
aagggcacaaaaaccttaagctgcgggggaaagacagccgaccctgtagcttccaaagct
catgcaaagacaattgcagaaggagaagaaaaagtaaaaccctccgcccttggggaagag
caagaaaccatcctgagcccagacctggagacctgctacccttag

>gi568815584f:94011683_94216524|GENSCAN_predicted_peptide_5|235_aa
MTIQCSKQRAQYQQKINGQKVNKDIQDLNSAMGQADLIGIYRTLYPKSTEYTFFSAPHHT
YSKIDHIIGSKTLLSKCKRMEIVTNSLSDHSAITLEVRIRKCTQNLTTTWKLNNLLLNDY
WVHIEIKAEIIKFFETNENKDTMYQNLWDTAKAVFRRKFIALNAHRRKQKRSKIKTLISQ
LKEVEKQEQTNPKASGRQKISEIRAELKEIETRKTLQKINESGSWFFEKINKIDC

>gi568815584f:94011683_94216524|GENSCAN_predicted_CDS_5|708_bp
atgaccatccagtgcagcaagcagcgtgctcagtatcaacagaagatcaacggacagaaa
gttaacaaggatattcaggacttgaactcagctatgggccaagcggacctaataggcatc
tacagaactctctaccccaaatcaacagaatatacattcttctcggcaccacatcacact
tattctaaaattgaccacatcattggaagtaaaacactcctcagcaaatgcaaaagaatg
gaaattgtaacaaacagtctctcagaccacagtgcaatcacattagaagtcaggattagg
aaatgcactcaaaacctcacaactacatggaaactgaacaacctgctcttgaatgactac
tgggtacatattgaaattaaggcagaaataattaagttctttgaaaccaatgagaataaa
gacacaatgtaccagaatctctgggacacagctaaagcagtgtttagaaggaaatttata
gcactaaatgcccacagaagaaagcagaaaagatctaaaatcaaaaccctaatatcgcaa
ttaaaagaagtagagaagcaagagcaaacaaatccaaaagctagcggaagacaaaaaata
agtgagattagagcagaactaaaggagatagagacacgaaaaacccttcaaaaaatcaat
gaatctggaagctggttttttgaaaagattaacaaaatagactgctag

>gi568815584f:94011683_94216524|GENSCAN_predicted_peptide_6|113_aa
MDFSQNSLFGYMEDLQELTIIERPVRRSLKTPEEIERLTVDEDLSDIERAVYLLRQKLLS
ATIVQFVFSVIFCVYPEEKKSLYEKDACKCMFVAVQFAVAKIWNQPKCPSVNE

>gi568815584f:94011683_94216524|GENSCAN_predicted_CDS_6|342_bp
atggatttcagtcagaacagcctgttcggttacatggaggacctgcaggagctcaccatc
atcgagaggccggtccgccggagcctcaagacaccggaagaaatagaaagattgacagtc
gatgaagacctcagtgatattgaaagggctgtttatctgctcaggcaaaaactgctttct
gccactatagttcagtttgtattttctgtgattttctgtgtctacccagaggaaaagaag
tcattatatgaaaaagatgcttgcaaatgcatgtttgtagcagtacaatttgcagttgct
aaaatatggaaccagcccaaatgcccatcagtcaatgagtag