GENSCAN 1.0	Date run:  4-Nov-116	Time: 12:01:50

Sequence gi568815592r:35475838_35742824 : 266987 bp : 45.50% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.11 Intr -    255     82  174  0  0  106   92   289 0.999  31.24
 1.10 Intr -    568    444  125  2  2   94   72    78 0.162   7.10
 1.09 Intr -   1535   1474   62  1  2   81   92    85 0.735   6.58
 1.08 Intr -   2734   2571  164  1  2   83   46   138 0.655   7.87
 1.07 Intr -   3479   3468   12  2  0  144  119    12 0.964   4.88
 1.06 Intr -   4285   4223   63  1  0  146  102    12 0.990   7.31
 1.05 Intr -   4519   4475   45  1  0   17   95   110 0.518   3.21
 1.04 Intr -   8787   8723   65  1  2   91   80    27 0.364   0.64
 1.03 Intr -  10874  10624  251  1  2  106   86   437 0.551  42.38
 1.02 Intr -  12024  11999   26  0  2  120   44    37 0.629  -0.68
 1.01 Init -  17324  17190  135  2  0   69   48   122 0.635   6.44
 1.00 Prom -  17456  17417   40                              -7.76

 2.14 PlyA -  22059  22054    6                               1.05
 2.13 Term -  22623  22490  134  1  2   90   46   389 0.998  33.15
 2.12 Intr -  24315  24144  172  0  1   73   84   309 0.979  28.52
 2.11 Intr -  27820  27722   99  1  0  102   56   207 0.916  19.21
 2.10 Intr -  28011  27900  112  2  1  102   45   202 0.967  17.68
 2.09 Intr -  30016  29904  113  1  2  141   59   109 0.999  12.48
 2.08 Intr -  30336  30166  171  0  0   78   98   251 0.991  25.24
 2.07 Intr -  33475  33372  104  2  2   62   53   120 0.923   5.79
 2.06 Intr -  33913  33797  117  2  0   46   40   101 0.737   1.54
 2.05 Intr -  34091  33990  102  0  0  112  105    12 0.977   5.45
 2.04 Intr -  35173  35024  150  2  0   39   47   238 0.973  14.93
 2.03 Intr -  35969  35811  159  0  0   47   93   148 0.940  11.16
 2.02 Intr -  36433  36343   91  1  1  109   64    41 0.960   3.37
 2.01 Init -  52219  52061  159  1  0   79   48   107 0.130   5.62
 2.00 Prom -  67046  67007   40                              -5.96

 3.03 PlyA -  67148  67143    6                               1.05
 3.02 Term -  69088  68933  156  1  0   89   48   165 0.619  10.53
 3.01 Init -  73488  73486    3  0  0   87   53     0 0.148  -3.60
 3.00 Prom -  77450  77411   40                              -7.86

 4.00 Prom +  78530  78569   40                              -4.16
 4.01 Init +  80036  80273  238  1  1  117   62   289 0.877  27.37
 4.02 Intr +  81327  81491  165  1  0   -5   87   113 0.441   1.83
 4.03 Term +  93464  93627  164  0  2   97   47    53 0.325   0.20
 4.04 PlyA +  96487  96492    6                               1.05

 5.09 PlyA -  96503  96498    6                               1.05
 5.08 Term - 100105  99998  108  1  0  115   48   134 0.874  10.61
 5.07 Intr - 101396 101157  240  2  0   27   93   375 0.999  29.65
 5.06 Intr - 104384 104199  186  2  0   54   87   149 0.993  11.29
 5.05 Intr - 111280 111197   84  1  0   54   93    83 0.549   5.42
 5.04 Intr - 115383 115293   91  2  1   94  100    54 0.978   7.20
 5.03 Intr - 121567 121411  157  2  1  110  121   131 0.925  17.67
 5.02 Intr - 143373 143259  115  0  1  119  106   108 0.964  15.72
 5.01 Init - 147946 147944    3  1  0  108   81     0 0.934   1.30
 5.00 Prom - 151440 151401   40                              -3.76

 6.04 PlyA - 153189 153184    6                               1.05
 6.03 Term - 154291 154230   62  2  2  140   43   -39 0.195  -5.23
 6.02 Intr - 161321 161177  145  2  1  106  116    69 0.986  11.36
 6.01 Init - 166987 166883  105  1  0   62  100    93 0.980   8.12
 6.00 Prom - 205835 205796   40                              -1.46

 7.04 PlyA - 206378 206373    6                               1.05
 7.03 Term - 212236 212121  116  2  2   62   48    93 0.842   1.43
 7.02 Intr - 212544 212257  288  1  0   75   58   122 0.889   5.12
 7.01 Init - 212955 212895   61  0  1  117   36   123 0.980   9.42
 7.00 Prom - 220852 220813   40                              -5.76

 8.00 Prom + 230915 230954   40                              -4.46
 8.01 Init + 236876 236885   10  1  1  103   91     2 0.415   2.56
 8.02 Intr + 255651 255748   98  1  2   75   73    49 0.000   1.83
 8.03 Intr + 259626 259772  147  2  0   68   96    30 0.002   2.23
 8.04 Intr + 261257 261434  178  1  1   24   86   223 0.006  15.19
 8.05 Intr + 262190 262335  146  0  2   18   94   142 0.962   7.80
 8.06 Intr + 262547 262681  135  1  0   85   99   175 0.988  19.06

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 251745 251646  100  2  1   84   50    66 0.801  -0.00
S.002 Intr - 252423 252368   56  0  2   95   93    87 0.882   7.68
S.003 Init + 261272 261434  163  1  1   88   86   191 0.887  18.84


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815592r:35475838_35742824|GENSCAN_predicted_peptide_1|374_aa
MRVTVNEQDSGCDATVYASERKGAEETYLFLDDTVTLMRALTEWLHAFGSCVTLLSRPVG
SGPEPRATSTIASNSWNASSSPGEAREDGPEGLDKGLDNDAEGVWSPDIEQSFQEALAIY
PPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVLARKKVREYQVGIKVSSHLQ
VLARRKSREIQSKLKAMNLDQVSKDKALQSMASMSSAQIVSASVLQNKFSPPSPLPQAVF
STSSRVHGSQEVGCIKPFAQPAYPIQPPLPPTLSTAASVPVWQDRTIASSRLRLLEYSAF
MEVQRDPDTVTCLGVRYSKHLFVHIGQTNPAFSDPPLEAVDVRQIYDKFPEKKGGLKELY
EKGPPNAFFLVKFW

>gi568815592r:35475838_35742824|GENSCAN_predicted_CDS_1|1122_bp
atgcgggtaacagtgaatgagcaggacagtggctgtgacgcaactgtgtatgcgagcgag
aggaagggcgcagaggaaacctatttgttcttagatgacaccgtgactctcatgagggca
ctgactgagtggctgcatgcctttggcagctgcgtgaccttgctcagccgcccagtgggc
tcaggcccagagcccagagcaaccagcacaatagcgtccaacagctggaacgccagcagc
agccccggggaggcccgggaggatgggcccgagggcctggacaaggggctggacaacgat
gcggagggcgtgtggagcccggacatcgagcagagcttccaggaggccctggccatctac
ccgccctgcggccggcggaagatcatcctgtcagacgagggcaagatgtacggccgaaat
gagttgattgcacgctatattaaactgaggacggggaagactcggacgagaaaacaggtt
ctagctcggaagaaggtgcgggagtaccaggttggcatcaaggtctctagccacttgcaa
gttctagccaggcggaaatctcgggagattcagtctaagctgaaggccatgaacctggac
caggtctccaaggacaaagcccttcagagcatggcgtccatgtcctctgcccagatcgtc
tctgccagtgtcctgcagaacaagttcagcccaccttcccctctgccccaggccgtcttc
tccacttcctcgcgggtacatgggtcccaggaggtgggctgcatcaagccctttgcacag
ccagcctaccccatccagccgcccctgccgccgacgctcagcactgctgcctctgtgcct
gtgtggcaggaccgtaccattgcctcctcccggctgcggctcctggagtattcagccttc
atggaggtgcagcgagaccctgacacggtaacgtgtttgggggtgaggtacagcaaacac
ctgtttgtgcacatcggccagacgaaccccgccttctcagacccacccctggaggcagta
gatgtgcgccagatctatgacaaattccccgagaaaaagggaggattgaaggagctctat
gagaaggggccccctaatgccttcttccttgtcaagttctgg

>gi568815592r:35475838_35742824|GENSCAN_predicted_peptide_2|560_aa
MESASAESDYPYGGKLDFPQRKSGYHYQEKRKKMLGQKNWELRVGSPNGVKEERPAPAQR
LRKKRTEAPESPCPTGSKPRKPGAGRTGRPREEPSPDPAQARAPQTVYARFLRDPEAKKR
DPRETFLVARAPDAEDEEEEEEEDEEDEEEEAEEKKEKILLPPKKPLREKSSADLKERRA
KAQGPRGDLGSPDPPPKPLRVRNKEAPAGEGTKMRKTKKKGSGEADKDPSGSPASARKSP
AAMFLVGEGSPDKKALKKKGTPKGARKEEEEEEEAATVIKKSNQKGKAKGKGKKKEERAP
SPPVEVDEPREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKR
KRSKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVASLRQE
LAAVIYETNVLGFRGPRRMTVIIPGMSAENERVPIRPRNASDGLLVRWQNKTLESLIELH
NKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADDPDYIVLQFGRVAEDAFTLDYRYPL
CALQAFAIALSSFDGKLACE

>gi568815592r:35475838_35742824|GENSCAN_predicted_CDS_2|1683_bp
atggagtcagcctcagctgaatctgattatccatatggggggaaactggattttcctcaa
aggaaaagtgggtaccattaccaagagaaaaggaaaaagatgcttgggcagaagaactgg
gagctacgggttggaagtcccaatggggtcaaagaagagcgacccgccccggcacagagg
ctaaggaagaagaggacggaggcccccgaatccccctgccccacgggatccaagccccgg
aagcccggagctgggcggacggggaggccgcgggaggagccttccccagacccagcccag
gcccgggcgccgcagacggtctacgccaggttcctcagggaccccgaggccaagaagcgc
gacccccgggaaacctttctggtagcccgtgccccagacgcggaggacgaggaggaggag
gaagaggaggacgaggaggacgaggaagaggaggcagaggaaaagaaagagaaaatcctt
ctgcctcccaagaagcccctgagagagaagagctccgcagacctgaaggagaggagggcc
aaggcccagggcccaaggggagacctgggaagccctgaccccccaccgaaacctctgcgt
gttaggaataaggaagctccagcaggggaggggaccaagatgagaaagaccaagaagaaa
gggtctggggaggccgacaaggacccctcagggagcccagccagtgcgaggaagagccca
gcagccatgtttctggttggggaaggcagtcctgacaagaaagccctgaagaagaaaggc
actcccaaaggcgcgaggaaggaggaagaagaggaggaggaggcagctacggtgataaag
aagagcaatcaaaagggcaaagccaaaggaaaaggcaaaaagaaggaggagagggccccg
tctccccccgtggaggtggacgaaccccgggagtttgtgctccggcctgccccccagggc
cgcacggtgcgctgccggctgacccgggacaaaaagggcatggatcgaggcatgtatccc
tcctacttcctgcacctggacacggagaagaaggtgttcctcttggctggcaggaaacga
aaacggagcaagacagccaattacctcatctccatcgaccctaccaatctgtcccgagga
ggggagaatttcatcgggaagctgaggtccaacctcctggggaaccgcttcacggtcttt
gacaacgggcagaacccacagcgtgggtacagcactaatgtggcaagccttcggcaggag
ctggcagctgtgatctatgaaaccaacgtgctgggcttccgtggcccccggcgcatgacc
gtcatcattcctggcatgagtgcggagaacgagagggtccccatccggccccgaaatgct
agtgacggcctgctggtgcgctggcagaacaagacgctggagagcctcatagaactgcac
aacaagccacctgtctggaacgatgacagtggctcctacaccctcaacttccaaggccgg
gtcacccaggcctcagtcaagaacttccagattgtccacgctgatgaccccgactatatc
gtgctgcagttcggccgcgtggcggaggacgccttcaccctagactaccggtacccgctg
tgcgccctgcaggccttcgccatcgccctctccagtttcgacgggaagctggcctgcgag
tga

>gi568815592r:35475838_35742824|GENSCAN_predicted_peptide_3|52_aa
MMASSRWRGDAIQVQTDMDAPAGEKRLSLASPETHAGASNNIRRTLELNNHE

>gi568815592r:35475838_35742824|GENSCAN_predicted_CDS_3|159_bp
atgatggcgtcctcgagatggagaggcgatgccatccaggtgcagacagacatggacgca
cctgcaggggagaaaaggttgtcactggccagccctgagacccacgcaggagcaagcaac
aacatccggaggacactggaactgaacaaccatgaataa

>gi568815592r:35475838_35742824|GENSCAN_predicted_peptide_4|188_aa
MVCVNVLADALKSINNAEKRGKRPVLIRPCSKLIVRFLTVMMKHGYIGEFEIIDDRRAGK
IVANLTGRLNKCGVISPRFENPSDFKQEKDSLEGYWVVHKITERAEEPRSKTKPFLQLSP
SPSAGTAIACQLWADVSSRWQMLCDDAAICMPHFSLVCESLSPGGPILHLSGTVPSSQQM
GRKCLGAG

>gi568815592r:35475838_35742824|GENSCAN_predicted_CDS_4|567_bp
atggtgtgcgtgaacgtcctggccgatgctctcaagagcatcaacaatgccgaaaagaga
ggcaaacgcccagtgcttattaggccgtgctccaaactcatcgtccggtttctcactgtg
atgatgaagcatggttacattggcgaatttgaaatcattgatgatcgcagagctgggaaa
attgttgcgaacctcacaggcaggctaaacaagtgtggagtgatcagccccagattcgaa
aatccttctgactttaagcaggaaaaggattcattggaaggatattgggtagttcacaaa
atcactgagagggctgaggaaccaagatccaagactaaaccatttctgcagttaagcccc
agcccttcggctggcacagccatcgcctgccagctctgggcagatgtcagtagcagatgg
cagatgctctgtgatgatgcagccatctgcatgcctcatttttcacttgtctgcgagtcg
ctcagcccagggggccccatccttcacctcagtggaacagtacccagttcacaacagatg
ggccgtaaatgtttgggggctggctga

>gi568815592r:35475838_35742824|GENSCAN_predicted_peptide_5|327_aa
MIELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGGRMFDCRDVAFTV
GEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSF
EKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESK
ASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESA
KGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMG
KKTSEGVTNEKGTDSQAMEEEKPEGHV

>gi568815592r:35475838_35742824|GENSCAN_predicted_CDS_5|984_bp
atgattgagctccttgatttcaaaggagaggatttatttgaagatggaggcattatccgg
agaaccaaacggaaaggagagggatattcaaatccaaacgaaggagcaacagtagaaatc
cacctggaaggccgctgtggtggaaggatgtttgactgcagagatgtggcattcactgtg
ggcgaaggagaagaccacgacattccaattggaattgacaaagctctggagaaaatgcag
cgggaagaacaatgtattttatatcttggaccaagatatggttttggagaggcagggaag
cctaaatttggcattgaacctaatgctgagcttatatatgaagttacacttaagagcttc
gaaaaggccaaagaatcctgggagatggataccaaagaaaaattggagcaggctgccatt
gtcaaagagaagggaaccgtatacttcaagggaggcaaatacatgcaggcggtgattcag
tatgggaagatagtgtcctggttagagatggaatatggtttatcagaaaaggaatcgaaa
gcttctgaatcatttctccttgctgcctttctgaacctggccatgtgctacctgaagctt
agagaatacaccaaagctgttgaatgctgtgacaaggcccttggactggacagtgccaat
gagaaaggcttgtataggaggggtgaagcccagctgctcatgaacgagtttgagtcagcc
aagggtgactttgagaaagtgctggaagtaaacccccagaataaggctgcaagactgcag
atctccatgtgccagaaaaaggccaaggagcacaacgagcgggaccgcaggatatacgcc
aacatgttcaagaagtttgcagagcaggatgccaaggaagaggccaataaagcaatgggc
aagaagacttcagaaggggtcactaatgaaaaaggaacagacagtcaagcaatggaagaa
gagaaacctgagggccacgtatga

>gi568815592r:35475838_35742824|GENSCAN_predicted_peptide_6|103_aa
MTTDEGAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGK
LSNGKKFDSSHDRNEPFVFSLGKETCSVIGAGMQWHHHNSLQH

>gi568815592r:35475838_35742824|GENSCAN_predicted_CDS_6|312_bp
atgactactgatgaaggtgccaagaacaatgaagaaagccccacagccactgttgctgag
cagggagaggatattacctccaaaaaagacaggggagtattaaagattgtcaaaagagtg
gggaatggtgaggaaacgccgatgattggagacaaagtttatgtccattacaaaggaaaa
ttgtcaaatggaaagaagtttgattccagtcatgatagaaatgaaccatttgtctttagt
cttggcaaagagacttgctctgttattggggctggaatgcaatggcaccatcataactca
ctacagcattga

>gi568815592r:35475838_35742824|GENSCAN_predicted_peptide_7|154_aa
MATEMGRPAAAPREPNALLPGGRTLSRHRCGREPNFAFGSGRRDNRTPGRAERRDAAGAG
RIRPPGGAVKGMVAGWPRSGCGRAVPAFTCRLGTSVGEPHRRCRPLVEESAQRRLTGHTE
AAERCARAPYALLFWDVKTSSALLVVQKGAPVTV

>gi568815592r:35475838_35742824|GENSCAN_predicted_CDS_7|465_bp
atggccacggagatggggcggccggccgcggcgccccgggagccgaacgccctccttcca
ggcggccggaccctcagccggcaccgctgcgggcgggagccaaacttcgctttcgggtcc
gggcgccgggacaaccggaccccagggcgagccgagcgccgggacgccgcgggcgcgggg
cggattcgcccacctggcggggctgtgaaggggatggtggcggggtggccgcgctccggg
tgtggacgggcggtccccgccttcacctgccgcctcgggacaagcgttggggaaccgcat
cgccgctgtcggccgcttgtggaggagtccgcgcagcgccgtctaacaggccataccgaa
gcggctgaacgctgtgccagggctccttatgctcttctgttctgggacgtgaaaacgtct
tccgccttattggtcgtccaaaaaggtgcaccggtcacagtataa

>gi568815592r:35475838_35742824|GENSCAN_predicted_peptide_8|238_aa
MQGVALTSVTSRGAWPLSIVSWCPGPLRIRTWGEDEGVLGQGSEWAGLAGRSIIGDAVSL
PPSILGAAQDPEPSVPVLPKRDQGQGNTEDMGKSIPQYLGQLDIRKSVVSLATGAGAIYL
LYKAIKAGIKCKPPLCSNSPICIARLAVERERHGRDSGELRRLLNSLECKQDEYAKSMIL
HSITRCVYLLEAEASACTTDDIVLLGYMLDDKDNSVKTQALNTLKAFSGIRKFRLKIQ

>gi568815592r:35475838_35742824|GENSCAN_predicted_CDS_8|714_bp
atgcagggtgttgccttgacatcagtgacgtcgcgaggggcgtggcctctctccatcgtc
tcctggtgccctgggcccctccgcatccgaacctggggggaggatgagggtgtactgggc
caaggctctgagtgggcaggcctggctggccgcagcatcattggagatgctgtttcccta
cctccttccatcctgggtgcagcccaggacccagagccttctgtcccagttctcccaaaa
agggatcagggccagggcaacactgaagacatgggcaagagcatcccccaatacctgggg
caactggacatccgcaaaagcgtagtcagcctggccacaggcgccggggcgatctacctg
ctctacaaggccatcaaggctggcataaaatgcaaaccacccctctgtagcaactcaccc
atctgcatcgcccgcctggcagtcgagcgagagcggcacgggcgggactcaggtgagctc
cggaggctcctcaactctttggagtgcaaacaggatgagtatgccaagagcatgatcctg
cacagtatcactcgctgtgtgtacttgctggaggctgaggcctctgcttgtactacggat
gacatcgtgttgctgggctacatgctggatgacaaggacaacagtgtcaaaacccaagct
ctgaatacacttaaagctttctctggcatcagaaaattcaggctcaaaatccag