GENSCAN 1.0	Date run:  4-Nov-116	Time: 12:01:19

Sequence gi568815595f:13381246_13604680 : 223435 bp : 50.96% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.07 Intr -    487    360  128  2  2   49   64    73 0.024   1.40
 1.06 Intr -   5162   5030  133  2  1   46   89   144 0.934  10.52
 1.05 Intr -   7208   7058  151  1  1   76   86   198 0.978  18.56
 1.04 Intr -  10062   9966   97  1  1  100   91   136 0.993  14.17
 1.03 Intr -  16243  16112  132  2  0   72  100   320 0.501  32.22
 1.02 Intr -  18616  18480  137  0  2  100   61   222 0.810  20.91
 1.01 Init -  38981  38815  167  2  2   96   81   450 0.963  42.21
 1.00 Prom -  55566  55527   40                              -4.76

 2.03 PlyA -  56086  56081    6                               1.05
 2.02 Term -  66094  65834  261  1  0   96   36   220 0.693  13.13
 2.01 Init -  67146  67144    3  0  0  108   27     0 0.128  -4.10
 2.00 Prom -  70733  70694   40                              -3.66

 3.00 Prom +  77857  77896   40                              -2.66
 3.01 Init +  78395  78533  139  1  1   65  100    49 0.259   4.11
 3.02 Intr +  92149  92278  130  2  1   78   75    40 0.092   1.45
 3.03 Intr + 100001 100149  149  2  2   56   86   176 0.431  14.08
 3.04 Intr + 102219 102319  101  1  2   25   87   153 0.410   8.73
 3.05 Intr + 115491 115607  117  2  0   90   78    89 0.966   8.76
 3.06 Intr + 117268 117310   43  0  1  105   92    92 0.999   9.11
 3.07 Intr + 119468 119544   77  0  2  106   93   124 0.999  13.93
 3.08 Intr + 120626 120688   63  1  0   96  109    99 0.995  11.71
 3.09 Intr + 121639 121735   97  0  1   58   68   238 0.954  18.38
 3.10 Intr + 122849 123027  179  0  2   87   88   286 0.694  28.14
 3.11 Term + 123223 123438  216  0  0  138   46   282 0.998  26.14
 3.12 PlyA + 124067 124072    6                               1.05

 4.08 PlyA - 128290 128285    6                               1.05
 4.07 Term - 138688 138491  198  1  0   87   39    83 0.026   0.70
 4.06 Intr - 154532 154319  214  1  1   60   61   132 0.403   6.42
 4.05 Intr - 158881 158751  131  1  2  123   75    73 0.748   8.99
 4.04 Intr - 167148 167045  104  1  2   81   60    92 0.671   5.59
 4.03 Intr - 169013 168998   16  2  1  109  103   -12 0.184  -2.48
 4.02 Intr - 172702 172625   78  1  0   87   70    50 0.253   2.85
 4.01 Init - 176404 176351   54  1  0   47   84    89 0.248   3.69
 4.00 Prom - 178271 178232   40                              -6.16

 5.00 Prom + 182868 182907   40                              -6.46
 5.01 Init + 189111 190416 1306  2  1   87  116  1432 0.875 135.81
 5.02 Term + 192754 192776   23  2  2  114   41    18 0.290  -1.83
 5.03 PlyA + 196936 196941    6                               1.05

 6.04 PlyA - 196952 196947    6                               1.05
 6.03 Term - 199125 199015  111  0  0   27   42   129 0.230   0.76
 6.02 Intr - 203300 203267   34  1  1   91   84     9 0.184  -0.97
 6.01 Init - 203906 203812   95  2  2   93   40   111 0.419   4.68
 6.00 Prom - 222476 222437   40                              -2.46


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  20143  20136    8  1  2   75   89    12 0.800  -0.35
S.002 Intr +  22209  22312  104  1  2   94   89    77 0.851   8.29


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595f:13381246_13604680|GENSCAN_predicted_peptide_1|315_aa
MAARGRGLLLLTLSVLLAAGPSAAAAKLNIPKVLLPFTRATRVNFTLEASEGCYRWLSTR
PEVASIEPLGLDEQQCSQKAVVQARLTQPARLTSIIFAEDITTGQVLRCDAIVDLIHDIQ
IVSTTRELYLEDSPLELKIQALDSEGNTFSTLAGLVFEWTIVKDSEADRFSDSHNALRIL
TFLESTYIPPSYISEMEKAAKQGDTILVSGMKTGSSKLKARIQEAVYKNVRPAEVRLLIL
ENILLNPAYDVYLMVGTSIHYKVQKIRQGKITDDSRDDLGPQERLSVVGPIIQRQELGSA
LNICEDFHIQCLLQG

>gi568815595f:13381246_13604680|GENSCAN_predicted_CDS_1|945_bp
atggcggcgcggggccgggggctgctgctgctgacgctgtcggtgctgttggcggcgggc
ccctccgccgctgcggccaagctcaacatccccaaagtgctgctgcccttcacgcgggcc
acgcgcgttaacttcacgctggaggcctcggagggctgctaccgctggttgtccacccgg
ccggaggtggccagcatcgagccgctgggcctggacgagcagcagtgctcccagaaggca
gtggtgcaggcccgcctgacccagcctgcccgcctcaccagcatcatcttcgcagaggac
atcaccacaggccaggtcctgcgctgtgatgccattgtggacctcatccatgacatccag
atcgtctccaccacccgcgagctctacctggaggactcccccctggagctgaagatccag
gccctggactccgaagggaacaccttcagcactctggctggactggtcttcgagtggacg
attgtgaaggactccgaggcggacaggttctcagactcccacaatgcgctgcgaatcctc
actttcttggagtctacgtacatccctccttcttacatctcagagatggagaaggctgcc
aagcaaggggacaccatcctggtgtctgggatgaagaccgggagctccaagctcaaggct
cgcatccaggaggctgtctacaagaatgtacgccctgcagaagtcaggctgctgattttg
gaaaacatccttctgaacccggcctatgacgtctacctgatggtgggaacctccattcac
tacaaggtgcagaagatcaggcaagggaaaattacagatgatagcagggatgatctgggg
cctcaggagcgcctttctgttgttggcccaataattcaaagacaggaactgggcagtgcc
cttaatatctgcgaagacttccacattcagtgtctcttacaagga

>gi568815595f:13381246_13604680|GENSCAN_predicted_peptide_2|87_aa
MGRVRDLQPAMPEPPTHSMGSCVARASPTSTTPCSTAPSPIDHPRAEECERTAQDWQAAP
PAAPVRDPLGEASWAPESGGAMENLYV

>gi568815595f:13381246_13604680|GENSCAN_predicted_CDS_2|264_bp
atgggcagggttcgggacctgcagcccgccatgcctgagcctcccacccactccatgggc
tcctgtgtggcccgagcctccccgacgagcaccaccccctgctccacagcgcccagtccc
atcgaccacccaagggctgaggaatgcgagcgcacggcgcaggactggcaggcagctcca
cctgcagccccagtgcgggatccactaggtgaagccagctgggctcctgagtctggtggg
gccatggagaacctttatgtctag

>gi568815595f:13381246_13604680|GENSCAN_predicted_peptide_3|436_aa
MLQTLRKAVRGCRVSQSTVIKGRSGGDRATDRETTKSKCRESGLLGKKATYYTIAFMRNV
QNRHIYRSKMWINGFQWMPGGRKWVMTAKRLHTTQLYQHVPETRWPIVYSPRYNITFMGL
EKLHPFDAGKWGKVINFLKEEKLLSDSMLVEAREASEEDLLVVHTRRYLNELKWSFAVAT
ITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGG
FCAYADITLAIKFLFERVEGISRATIIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPG
DRFAKQAIRRKVELEWGTEDDEYLDKVERNIKKSLQEHLPDVVVYNAGTDILEGDRLGGL
SISPAGIVKRDELVFRMVRGRRVPILMVTSGGYQKRTARIIADSILNLFGLGLIGPESPS
VSAQNSDTPLLPPAVP

>gi568815595f:13381246_13604680|GENSCAN_predicted_CDS_3|1311_bp
atgctacagacactgagaaaggctgtgaggggatgcagagtttcacaaagcacagtgatc
aaaggccgtagcggtggggatcgtgctaccgacagagaaactacgaaatccaaatgcagg
gagagtggccttttaggaaaaaaggccacatattatacaattgcatttatgcgaaacgtc
cagaataggcacatctatagatccaaaatgtggattaatggcttccagtggatgccggga
gggaggaaatgggtaatgactgctaaaaggctacacacaacccagctgtaccagcatgtg
ccagagacacgctggccaatcgtgtactcgccgcgctacaacatcaccttcatgggcctg
gagaagctgcatccctttgatgccggaaaatggggcaaagtgatcaatttcctaaaagaa
gagaagcttctgtctgacagcatgctggtggaggcgcgggaggcctcggaggaggacctg
ctggtggtgcacacgaggcgctatcttaatgagctcaagtggtcctttgctgttgctacc
atcacagaaatcccccccgttatcttcctccccaacttccttgtgcagaggaaggtgctg
aggccccttcggacccagacaggaggaaccataatggcggggaagctggctgtggagcga
ggctgggccatcaacgtggggggtggcttccaccactgctccagcgaccgtggcgggggc
ttctgtgcctatgcggacatcacgctcgccatcaagtttctgtttgagcgtgtggagggc
atctccagggctaccatcattgatcttgatgcccatcagggcaatgggcatgagcgagac
ttcatggacgacaagcgtgtgtacatcatggatgtctacaaccgccacatctacccaggg
gaccgctttgccaagcaggccatcaggcggaaggtggagctggagtggggcacagaggat
gatgagtacctggataaggtggagaggaacatcaagaaatccctccaggagcacctgccc
gacgtggtggtatacaatgcaggcaccgacatcctcgagggggaccgccttggggggctg
tccatcagcccagcgggcatcgtgaagcgggatgagctggtgttccggatggtccgtggc
cgccgggtgcccatccttatggtgacctcaggcgggtaccagaagcgcacagcccgcatc
attgctgactccatacttaatctgtttggcctggggctcattgggcctgagtcacccagc
gtctccgcacagaactcagacacaccgctgcttccccctgcagtgccctga

>gi568815595f:13381246_13604680|GENSCAN_predicted_peptide_4|264_aa
MLMLLGGGCLAPELLSSRALPGQQCQHSQGGAPDSQMSNQKPDKPPRSHETYGLVVTTSH
LSSSHGPKVCLPPPPGVSLQPRTGVLQPLLSPGLFTRALIREQMGDPHPLDHTGQLAKPL
EVEKTPARRVGTVQPLCSKPENGQGEMSPYGLPDNFKEEAALNPTANFTQPKSAPRSSRL
PLPPASLRRDFSLHPATHREALLGWNSSSGRKPLSFQSTEFAGLLKGGLEALGPDTWRLC
SQWTSLGGREADGLILVGARGLAS

>gi568815595f:13381246_13604680|GENSCAN_predicted_CDS_4|795_bp
atgctgatgctcctgggaggaggctgccttgctccagagcttctgagctcgagggctctt
cctgggcaacaatgtcagcatagccaggggggcgcccccgattcacagatgagcaaccag
aagcccgacaagccacccaggtcccatgagacgtatggcctggtggtcaccacctcacat
ctgagcagcagccatgggcccaaagtgtgcctgcccccacccccaggggtctccctgcag
cccaggacaggggtgcttcaacccctcctttctccaggcctcttcaccagggccctgata
agggagcagatgggagacccacatcctctggaccacactggccagctggccaagcccctg
gaagtagagaagacccccgcaagaagagtgggcacagtgcagcctctctgcagcaagccc
gagaatgggcagggagagatgtcaccatacggcctgccagacaacttcaaggaagaggcg
gctctcaaccccacagccaacttcacgcagccgaaatcagctccacgctcctccaggctc
cccctaccacctgcatccctccggagagacttcagtctccatcctgccacccacagggaa
gccctcttgggctggaatagctcctcaggccgaaagcccctgagctttcagagcactgag
tttgctgggctgctcaagggtgggctagaagctctgggtccagacacttggaggctctgc
agccagtggacctctctaggaggaagagaagctgatggcttgattcttgtcggagctaga
ggacttgcaagctag

>gi568815595f:13381246_13604680|GENSCAN_predicted_peptide_5|442_aa
MVLLWEPAGAWLALGLALALGPSVAAAAPRQDCTGVECPPLENCIEEALEPGACCATCVQ
QGCACEGYQYYDCLQGGFVRGRVPAGQSYFVDFGSTECSCPPGGGKISCQFMLCPELPPN
CIEAVVVADSCPQCGQVGCVHAGHKYAAGHTVHLPPCRACHCPDAGGELICYQLPGCHGN
FSDAEEGDPERHYEDPYSYDQEVAEVEAATALGGEVQAGAVQAGAGGPPAALGGGSQPLS
TIQAPPWPAVLPRPTAAAALGPPAPVQAKARRVTEDSEEEEEEEEEREEMAVTEQLAAGG
HRGLDGLPTTAPAGPSLPIQEERAEAGARAEAGARPEENLILDAQATSRSTGPEGVTHAP
SLGKAALVPTQAVPGSPRDPVKPSPHNILSTSLPDAAWIPPTREVPRKPQVLPHSHVEED
TDPNSVHSIPRSSPEGGGLSSL

>gi568815595f:13381246_13604680|GENSCAN_predicted_CDS_5|1329_bp
atggtgctgctctgggagcctgcaggagcctggcttgctctgggcctggccctggccctg
ggccccagcgtggccgcagctgcccctcggcaggactgcacgggcgtggagtgcccgccg
ctggagaactgcattgaggaggcgctggagccgggtgcctgctgtgccacgtgtgtgcag
cagggctgcgcctgcgagggctaccagtactatgactgcctacagggtggcttcgtgcgc
ggccgcgtgcccgccggtcagtcctattttgtggacttcgggagcactgagtgctcctgc
ccaccaggcggcggcaagatcagctgccagttcatgctgtgcccggagctgccgcccaac
tgcatcgaggctgtagtggtggctgacagctgcccacagtgcggccaggtgggctgcgtc
cacgcgggccacaagtacgccgctggccacactgttcacctgccgccctgccgggcctgc
cactgccctgacgccggtggagagctcatctgctaccagctccccggttgccacgggaac
ttctcagatgccgaggagggtgaccccgagcgacactacgaagacccctacagctatgac
caggaggtggccgaggtggaagcagcaacagccctggggggtgaggtccaggcgggtgca
gtccaggcaggcgcagggggccccccagctgctctgggaggtgggagtcagccactgtcc
accatccaggcacccccctggccagctgtcctccccaggcccacagcggctgctgccctg
ggtcccccagccccagtgcaggccaaagctaggagagtgaccgaggacagtgaggaggaa
gaagaggaggaggaggagagagaggaaatggctgtcactgagcagctggcagcaggtggc
cacagggggctggatgggctgcccactacagccccagctggacccagtcttcctatccag
gaggagagggcagaagctggggcaagggcagaagctggggcaaggcctgaagagaacctc
atcctggatgcccaagccacgtcccgcagcactgggccggagggcgtgacgcatgcaccg
agcctgggcaaggctgctctcgtcccaactcaggccgtgcctggctctcccagggaccca
gtcaagcccagcccccacaacatcctgtccacatcactgcctgatgcagcctggatccca
cccacccgagaagtgcccaggaagccgcaagttctgccccattcccacgtggaggaggac
acagaccccaactctgtccattctatccccagaagtagccctgaaggcggtggcctgagc
tccctgtag

>gi568815595f:13381246_13604680|GENSCAN_predicted_peptide_6|79_aa
MPPPAKQPLARPLASLLLHPGSRGHTVTDEELPGVELPLLLVQNEERDILMTAGVSKIQY
TLQGEQVNNVYQGYKNTSI

>gi568815595f:13381246_13604680|GENSCAN_predicted_CDS_6|240_bp
atgcccccaccagccaagcaacctctggcaagacccttggcctccctgctcctgcatcca
ggctccaggggccacacggtgacagatgaggaattgccaggggtggagctcccactgttg
ctggtccagaacgaggaaagagacattctcatgactgcaggtgtaagtaaaatccagtac
accctccagggcgaacaagtgaacaacgtctaccagggctataaaaatacgtccatataa