FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8344, 301 aa 1>>>pF1KB8344 301 - 301 aa - 301 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.2684+/-0.000896; mu= 7.1726+/- 0.054 mean_var=131.0722+/-25.818, 0's: 0 Z-trim(110.5): 20 B-trim: 13 in 1/50 Lambda= 0.112026 statistics sampled from 11631 (11646) to 11631 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.358), width: 16 Scan time: 2.390 The best scores are: opt bits E(32554) CCDS6845.1 PDCL gene_id:5082|Hs108|chr9 ( 301) 1980 330.9 7.1e-91 CCDS41447.1 PDC gene_id:5132|Hs108|chr1 ( 194) 641 114.4 6.9e-26 CCDS1370.1 PDC gene_id:5132|Hs108|chr1 ( 246) 641 114.5 8.4e-26 >>CCDS6845.1 PDCL gene_id:5082|Hs108|chr9 (301 aa) initn: 1980 init1: 1980 opt: 1980 Z-score: 1745.0 bits: 330.9 E(32554): 7.1e-91 Smith-Waterman score: 1980; 99.7% identity (100.0% similar) in 301 aa overlap (1-301:1-301) 10 20 30 40 50 60 pF1KB8 MTTLDDKLLGEKLQYYYSSSEDEDSDHEDKDRGRCAPASSSVPAEAELAGEGISVNTGPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 MTTLDDKLLGEKLQYYYSSSEDEDSDHEDKDRGRCAPASSSVPAEAELAGEGISVNTGPK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 GVINDWRRFKQLETEQREEQCREMERLIKKLSMTCRSHLDEEEEQQKQKDLQEKISGKMT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 GVINDWRRFKQLETEQREEQCREMERLIKKLSMTCRSHLDEEEEQQKQKDLQEKISGKMT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 LKEFAIMNEDQDDEEFLQQYRKQRMEEMRQQLHKGPQFKQVFEISSGEGFLDMIDKEQKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 LKEFAIMNEDQDDEEFLQQYRKQRMEEMRQQLHKGPQFKQVFEISSGEGFLDMIDKEQKS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 IVIMVHIYEDGIPGTEAMNGCMICLAAEYPAVKFCKVESSVIGASSQFTRNALPALLIYK :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: CCDS68 IVIMVHIYEDGIPGTEAMNGCMICLAAEYPAVKFCKVKSSVIGASSQFTRNALPALLIYK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 GGELIGNFVRVTDQLGDDFFAVDLEAFLQEFGLLPEKEVLVLTSVRNSATCHSEDSDLEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 GGELIGNFVRVTDQLGDDFFAVDLEAFLQEFGLLPEKEVLVLTSVRNSATCHSEDSDLEI 250 260 270 280 290 300 pF1KB8 D : CCDS68 D >>CCDS41447.1 PDC gene_id:5132|Hs108|chr1 (194 aa) initn: 660 init1: 640 opt: 641 Z-score: 578.2 bits: 114.4 E(32554): 6.9e-26 Smith-Waterman score: 641; 48.6% identity (84.2% similar) in 183 aa overlap (104-286:5-187) 80 90 100 110 120 130 pF1KB8 TEQREEQCREMERLIKKLSMTCRSHLDEEEEQQKQKDLQEKISGKMTLKEFAIMNEDQDD .... :: .:..: ::...:. .......: CCDS41 MSSPQSRNGKDSKERVSRKMSIQEYELIHKEKED 10 20 30 140 150 160 170 180 190 pF1KB8 EEFLQQYRKQRMEEMRQQLHKGPQFKQVFEISSGEGFLDMIDKEQKSIVIMVHIYEDGIP :. :..::.: :..:.:.: ::.. :.:. .:. ::. :.:: : .:.:::::::: CCDS41 ENCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGKQFLETIEKELKITTIVVHIYEDGIK 40 50 60 70 80 90 200 210 220 230 240 250 pF1KB8 GTEAMNGCMICLAAEYPAVKFCKVESSVIGASSQFTRNALPALLIYKGGELIGNFVRVTD : .:.:. . ::::::: :::::...: ::...:. ..::.::::::::::.::. :.. CCDS41 GCDALNSSLTCLAAEYPIVKFCKIKASNTGAGDRFSLDVLPTLLIYKGGELISNFISVAE 100 110 120 130 140 150 260 270 280 290 300 pF1KB8 QLGDDFFAVDLEAFLQEFGLLPEKEVLVLTSVRNSATCHSEDSDLEID :....::: :.:.::.:.:::::.:: :: .. CCDS41 QFAEEFFAGDVESFLNEYGLLPEREVHVLEHTKIEEEDVE 160 170 180 190 >>CCDS1370.1 PDC gene_id:5132|Hs108|chr1 (246 aa) initn: 753 init1: 640 opt: 641 Z-score: 576.7 bits: 114.5 E(32554): 8.4e-26 Smith-Waterman score: 733; 45.3% identity (79.2% similar) in 236 aa overlap (51-286:14-239) 30 40 50 60 70 80 pF1KB8 EDEDSDHEDKDRGRCAPASSSVPAEAELAGEGISVNTGPKGVINDWRRFKQLETEQREEQ :: ...:::::::::::.:: ::... . CCDS13 MEEAKSQSLEEDFEGQATHTGPKGVINDWRKFK-LESQDSDSI 10 20 30 40 90 100 110 120 130 140 pF1KB8 CREMERLIKKLSMTCRSHLDEEEEQQKQKDLQEKISGKMTLKEFAIMNEDQDDEEFLQQY .......: .... :: .:..: ::...:. .......::. :..: CCDS13 PPSKKEILRQMS---------SPQSRNGKDSKERVSRKMSIQEYELIHKEKEDENCLRKY 50 60 70 80 90 150 160 170 180 190 200 pF1KB8 RKQRMEEMRQQLHKGPQFKQVFEISSGEGFLDMIDKEQKSIVIMVHIYEDGIPGTEAMNG :.: :..:.:.: ::.. :.:. .:. ::. :.:: : .:.:::::::: : .:.:. CCDS13 RRQCMQDMHQKLSFGPRYGFVYELETGKQFLETIEKELKITTIVVHIYEDGIKGCDALNS 100 110 120 130 140 150 210 220 230 240 250 260 pF1KB8 CMICLAAEYPAVKFCKVESSVIGASSQFTRNALPALLIYKGGELIGNFVRVTDQLGDDFF . ::::::: :::::...: ::...:. ..::.::::::::::.::. :..:....:: CCDS13 SLTCLAAEYPIVKFCKIKASNTGAGDRFSLDVLPTLLIYKGGELISNFISVAEQFAEEFF 160 170 180 190 200 210 270 280 290 300 pF1KB8 AVDLEAFLQEFGLLPEKEVLVLTSVRNSATCHSEDSDLEID : :.:.::.:.:::::.:: :: .. CCDS13 AGDVESFLNEYGLLPEREVHVLEHTKIEEEDVE 220 230 240 301 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 11:56:51 2016 done: Fri Nov 4 11:56:52 2016 Total Scan time: 2.390 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]