Result of FASTA (omim) for pF1KB8340
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8340, 73 aa
  1>>>pF1KB8340 73 - 73 aa - 73 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.2893+/-0.000241; mu= 12.7667+/- 0.015
 mean_var=63.8286+/-13.176, 0's: 0 Z-trim(121.0): 125  B-trim: 26 in 1/54
 Lambda= 0.160534
 statistics sampled from 36860 (37036) to 36860 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.434), width:  16
 Scan time:  4.030

The best scores are:                                      opt bits E(85289)
NP_631958 (OMIM: 607275) homeodomain-only protein  (  73)  480 118.4 1.1e-27
XP_016864222 (OMIM: 607275) PREDICTED: homeodomain (  73)  480 118.4 1.1e-27
XP_016864218 (OMIM: 607275) PREDICTED: homeodomain (  73)  480 118.4 1.1e-27
XP_016864219 (OMIM: 607275) PREDICTED: homeodomain (  73)  480 118.4 1.1e-27
XP_016864220 (OMIM: 607275) PREDICTED: homeodomain (  73)  480 118.4 1.1e-27
XP_016864221 (OMIM: 607275) PREDICTED: homeodomain (  73)  480 118.4 1.1e-27
NP_001138931 (OMIM: 607275) homeodomain-only prote (  73)  480 118.4 1.1e-27
XP_016864223 (OMIM: 607275) PREDICTED: homeodomain (  73)  480 118.4 1.1e-27
NP_631957 (OMIM: 607275) homeodomain-only protein  (  73)  480 118.4 1.1e-27
XP_016864217 (OMIM: 607275) PREDICTED: homeodomain (  88)  480 118.4 1.2e-27
NP_115884 (OMIM: 607275) homeodomain-only protein  (  91)  480 118.5 1.2e-27
XP_006714115 (OMIM: 607275) PREDICTED: homeodomain ( 111)  304 77.8 2.6e-15
NP_001138932 (OMIM: 607275) homeodomain-only prote ( 112)  304 77.8 2.7e-15
NP_776248 (OMIM: 138890,602471) homeobox protein g ( 257)  141 40.4  0.0011
NP_001297090 (OMIM: 106210,120430,136520,148190,16 ( 286)  141 40.5  0.0012
NP_001297089 (OMIM: 106210,120430,136520,148190,16 ( 286)  141 40.5  0.0012
NP_001297088 (OMIM: 106210,120430,136520,148190,16 ( 401)  141 40.6  0.0015
NP_000271 (OMIM: 106210,120430,136520,148190,16555 ( 422)  141 40.6  0.0015
NP_001245393 (OMIM: 106210,120430,136520,148190,16 ( 422)  141 40.6  0.0015
NP_001121084 (OMIM: 106210,120430,136520,148190,16 ( 422)  141 40.6  0.0015
NP_001245394 (OMIM: 106210,120430,136520,148190,16 ( 422)  141 40.6  0.0015
NP_001297087 (OMIM: 106210,120430,136520,148190,16 ( 436)  141 40.7  0.0016
NP_001595 (OMIM: 106210,120430,136520,148190,16555 ( 436)  141 40.7  0.0016
NP_001245391 (OMIM: 106210,120430,136520,148190,16 ( 436)  141 40.7  0.0016
NP_001245392 (OMIM: 106210,120430,136520,148190,16 ( 436)  141 40.7  0.0016
XP_011530329 (OMIM: 137600,180500,180550,601542,60 ( 271)  130 37.9  0.0066
NP_700476 (OMIM: 137600,180500,180550,601542,60422 ( 271)  130 37.9  0.0066
NP_001191328 (OMIM: 137600,180500,180550,601542,60 ( 271)  130 37.9  0.0066
NP_005020 (OMIM: 107250,602669,610623) pituitary h ( 302)  130 37.9  0.0071
NP_700475 (OMIM: 137600,180500,180550,601542,60422 ( 317)  130 38.0  0.0074
NP_001191327 (OMIM: 137600,180500,180550,601542,60 ( 317)  130 38.0  0.0074
NP_001191326 (OMIM: 137600,180500,180550,601542,60 ( 317)  130 38.0  0.0074
NP_000316 (OMIM: 137600,180500,180550,601542,60422 ( 324)  130 38.0  0.0075
NP_006184 (OMIM: 125853,167413,612225,612227) pair ( 343)  130 38.0  0.0078
XP_011514578 (OMIM: 125853,167413,612225,612227) P ( 351)  130 38.0  0.0079


>>NP_631958 (OMIM: 607275) homeodomain-only protein isof  (73 aa)
 initn: 488 init1: 480 opt: 480  Z-score: 618.3  bits: 118.4 E(85289): 1.1e-27
Smith-Waterman score: 480; 98.6% identity (98.6% similar) in 73 aa overlap (1-73:1-73)

               10        20        30        40        50        60
pF1KB8 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_631 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
               10        20        30        40        50        60

               70   
pF1KB8 SEGLPSECRSVID
       ::::::::::: :
NP_631 SEGLPSECRSVTD
               70   

>>XP_016864222 (OMIM: 607275) PREDICTED: homeodomain-onl  (73 aa)
 initn: 488 init1: 480 opt: 480  Z-score: 618.3  bits: 118.4 E(85289): 1.1e-27
Smith-Waterman score: 480; 98.6% identity (98.6% similar) in 73 aa overlap (1-73:1-73)

               10        20        30        40        50        60
pF1KB8 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
               10        20        30        40        50        60

               70   
pF1KB8 SEGLPSECRSVID
       ::::::::::: :
XP_016 SEGLPSECRSVTD
               70   

>>XP_016864218 (OMIM: 607275) PREDICTED: homeodomain-onl  (73 aa)
 initn: 488 init1: 480 opt: 480  Z-score: 618.3  bits: 118.4 E(85289): 1.1e-27
Smith-Waterman score: 480; 98.6% identity (98.6% similar) in 73 aa overlap (1-73:1-73)

               10        20        30        40        50        60
pF1KB8 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
               10        20        30        40        50        60

               70   
pF1KB8 SEGLPSECRSVID
       ::::::::::: :
XP_016 SEGLPSECRSVTD
               70   

>>XP_016864219 (OMIM: 607275) PREDICTED: homeodomain-onl  (73 aa)
 initn: 488 init1: 480 opt: 480  Z-score: 618.3  bits: 118.4 E(85289): 1.1e-27
Smith-Waterman score: 480; 98.6% identity (98.6% similar) in 73 aa overlap (1-73:1-73)

               10        20        30        40        50        60
pF1KB8 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
               10        20        30        40        50        60

               70   
pF1KB8 SEGLPSECRSVID
       ::::::::::: :
XP_016 SEGLPSECRSVTD
               70   

>>XP_016864220 (OMIM: 607275) PREDICTED: homeodomain-onl  (73 aa)
 initn: 488 init1: 480 opt: 480  Z-score: 618.3  bits: 118.4 E(85289): 1.1e-27
Smith-Waterman score: 480; 98.6% identity (98.6% similar) in 73 aa overlap (1-73:1-73)

               10        20        30        40        50        60
pF1KB8 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
               10        20        30        40        50        60

               70   
pF1KB8 SEGLPSECRSVID
       ::::::::::: :
XP_016 SEGLPSECRSVTD
               70   

>>XP_016864221 (OMIM: 607275) PREDICTED: homeodomain-onl  (73 aa)
 initn: 488 init1: 480 opt: 480  Z-score: 618.3  bits: 118.4 E(85289): 1.1e-27
Smith-Waterman score: 480; 98.6% identity (98.6% similar) in 73 aa overlap (1-73:1-73)

               10        20        30        40        50        60
pF1KB8 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
               10        20        30        40        50        60

               70   
pF1KB8 SEGLPSECRSVID
       ::::::::::: :
XP_016 SEGLPSECRSVTD
               70   

>>NP_001138931 (OMIM: 607275) homeodomain-only protein i  (73 aa)
 initn: 488 init1: 480 opt: 480  Z-score: 618.3  bits: 118.4 E(85289): 1.1e-27
Smith-Waterman score: 480; 98.6% identity (98.6% similar) in 73 aa overlap (1-73:1-73)

               10        20        30        40        50        60
pF1KB8 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
               10        20        30        40        50        60

               70   
pF1KB8 SEGLPSECRSVID
       ::::::::::: :
NP_001 SEGLPSECRSVTD
               70   

>>XP_016864223 (OMIM: 607275) PREDICTED: homeodomain-onl  (73 aa)
 initn: 488 init1: 480 opt: 480  Z-score: 618.3  bits: 118.4 E(85289): 1.1e-27
Smith-Waterman score: 480; 98.6% identity (98.6% similar) in 73 aa overlap (1-73:1-73)

               10        20        30        40        50        60
pF1KB8 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
               10        20        30        40        50        60

               70   
pF1KB8 SEGLPSECRSVID
       ::::::::::: :
XP_016 SEGLPSECRSVTD
               70   

>>NP_631957 (OMIM: 607275) homeodomain-only protein isof  (73 aa)
 initn: 488 init1: 480 opt: 480  Z-score: 618.3  bits: 118.4 E(85289): 1.1e-27
Smith-Waterman score: 480; 98.6% identity (98.6% similar) in 73 aa overlap (1-73:1-73)

               10        20        30        40        50        60
pF1KB8 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_631 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
               10        20        30        40        50        60

               70   
pF1KB8 SEGLPSECRSVID
       ::::::::::: :
NP_631 SEGLPSECRSVTD
               70   

>>XP_016864217 (OMIM: 607275) PREDICTED: homeodomain-onl  (88 aa)
 initn: 488 init1: 480 opt: 480  Z-score: 617.3  bits: 118.4 E(85289): 1.2e-27
Smith-Waterman score: 480; 98.6% identity (98.6% similar) in 73 aa overlap (1-73:16-88)

                              10        20        30        40     
pF1KB8                MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEE
                      :::::::::::::::::::::::::::::::::::::::::::::
XP_016 MRQHLTGNSLKRAGTMSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEE
               10        20        30        40        50        60

          50        60        70   
pF1KB8 ETQKWFKQRLAKWRRSEGLPSECRSVID
       :::::::::::::::::::::::::: :
XP_016 ETQKWFKQRLAKWRRSEGLPSECRSVTD
               70        80        




73 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:54:48 2016 done: Fri Nov  4 11:54:48 2016
 Total Scan time:  4.030 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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