FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8338, 272 aa 1>>>pF1KB8338 272 - 272 aa - 272 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.7879+/-0.000345; mu= 10.5279+/- 0.022 mean_var=172.8244+/-35.865, 0's: 0 Z-trim(120.6): 217 B-trim: 397 in 2/51 Lambda= 0.097560 statistics sampled from 35874 (36166) to 35874 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.424), width: 16 Scan time: 6.840 The best scores are: opt bits E(85289) NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [ ( 272) 1894 278.0 1.3e-74 NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [ ( 260) 693 108.9 9.8e-24 NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [ ( 250) 592 94.7 1.8e-19 NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [ ( 352) 510 83.3 6.8e-16 NP_059105 (OMIM: 605560) homeobox protein Hox-C10 ( 342) 438 73.2 7.5e-13 NP_002139 (OMIM: 142984,192950) homeobox protein H ( 340) 419 70.5 4.8e-12 NP_061824 (OMIM: 142957) homeobox protein Hox-A10 ( 410) 414 69.9 8.8e-12 NP_067015 (OMIM: 142986) homeobox protein Hox-D11 ( 338) 350 60.8 4e-09 NP_005915 (OMIM: 600535) homeobox protein MOX-2 [H ( 304) 335 58.6 1.6e-08 NP_055027 (OMIM: 605559) homeobox protein Hox-C11 ( 304) 333 58.3 1.9e-08 NP_005506 (OMIM: 142994,176450) motor neuron and p ( 401) 329 57.9 3.5e-08 NP_005514 (OMIM: 142958,605432) homeobox protein H ( 313) 319 56.4 7.8e-08 NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289) 318 56.2 8.1e-08 NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222) 309 54.8 1.6e-07 NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290) 305 54.4 2.9e-07 NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 304 54.2 3e-07 NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233) 301 53.7 3.7e-07 XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 300 53.5 4e-07 NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224) 300 53.5 4e-07 XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 300 53.5 4e-07 XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288) 300 53.7 4.7e-07 NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [ ( 242) 297 53.2 5.6e-07 NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 295 53.0 8.2e-07 XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242) 290 52.2 1.1e-06 XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243) 287 51.7 1.5e-06 NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243) 287 51.7 1.5e-06 NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 288 52.1 1.7e-06 NP_001186676 (OMIM: 142985) homeobox protein Hox-D ( 106) 278 50.1 2.1e-06 NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217) 279 50.6 3e-06 NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 280 50.8 3.2e-06 NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 279 50.6 3.4e-06 NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230) 278 50.5 3.5e-06 XP_011533177 (OMIM: 600297) PREDICTED: homeobox pr ( 321) 277 50.5 4.8e-06 NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 276 50.3 4.8e-06 XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 279 50.9 4.8e-06 XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 279 50.9 4.8e-06 XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 279 50.9 4.8e-06 NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 279 50.9 4.8e-06 XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 279 50.9 4.8e-06 XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 279 50.9 4.8e-06 NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 279 50.9 4.8e-06 NP_004494 (OMIM: 142972) homeobox protein Hox-C6 i ( 235) 270 49.3 7.7e-06 NP_067016 (OMIM: 142988) homeobox protein Hox-D12 ( 270) 269 49.3 9.3e-06 NP_078777 (OMIM: 142987) homeobox protein Hox-D1 [ ( 328) 269 49.4 1.1e-05 NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 269 49.4 1.2e-05 NP_776272 (OMIM: 142975) homeobox protein Hox-C12 ( 282) 265 48.7 1.4e-05 NP_710160 (OMIM: 142972) homeobox protein Hox-C6 i ( 153) 259 47.6 1.7e-05 XP_005257332 (OMIM: 142967) PREDICTED: homeobox pr ( 247) 259 47.8 2.3e-05 NP_004518 (OMIM: 214300,600147) homeobox protein M ( 254) 258 47.7 2.6e-05 NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 259 47.9 2.6e-05 >>NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [Homo (272 aa) initn: 1894 init1: 1894 opt: 1894 Z-score: 1460.4 bits: 278.0 E(85289): 1.3e-74 Smith-Waterman score: 1894; 100.0% identity (100.0% similar) in 272 aa overlap (1-272:1-272) 10 20 30 40 50 60 pF1KB8 MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 TVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 TVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 FAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 FAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 ENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 ENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVA 190 200 210 220 230 240 250 260 270 pF1KB8 RLLNLTERQVKIWFQNRRMKMKKINKDRAKDE :::::::::::::::::::::::::::::::: NP_689 RLLNLTERQVKIWFQNRRMKMKKINKDRAKDE 250 260 270 >>NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [Homo (260 aa) initn: 800 init1: 537 opt: 693 Z-score: 547.1 bits: 108.9 E(85289): 9.8e-24 Smith-Waterman score: 824; 51.3% identity (70.4% similar) in 277 aa overlap (1-272:1-258) 10 20 30 40 50 pF1KB8 MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPP--RQAATLAEHPDFSPCSFQS :..:: ..:::::: :.. : : :. .:. :.: ..: : .. . . :: ::: NP_008 MSATGPISNYYVDS-LISHDNEDLLA-SRF-PATGAHPAAARPSGLVPDCSDFPSCSFAP 10 20 30 40 50 60 70 80 90 100 110 pF1KB8 KATVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGA : .::..:: :: . .. .::: :: :: ..: : ::::.:::: :: NP_008 KPAVFSTSWAPVPSQSS-----VVYH-----PY-GPQPHLGA---DTRYMRTWLEPLSGA 60 70 80 90 100 120 130 140 150 160 170 pF1KB8 LSFAGLPSS-RPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSE .:: ..:.. : :..::. .::.:: . . : :: ::: :.. :. : NP_008 VSFPSFPAGGRHYALKPDAYPGRRADCGPGEGR--SYPDYMYGSPGELRDRAPQTLPSPE 110 120 130 140 150 160 180 190 200 210 220 230 pF1KB8 NNAENESGG--DKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDR .: : .: .::.::.:::.::::::::::::::.::::::::::::::::::: NP_008 ADALAGSKHKEEKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDR 170 180 190 200 210 220 240 250 260 270 pF1KB8 RYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE ::::::.:::::::::::::::::::::.::... : NP_008 RYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKEQS 230 240 250 260 >>NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [Homo (250 aa) initn: 704 init1: 485 opt: 592 Z-score: 470.5 bits: 94.7 E(85289): 1.8e-19 Smith-Waterman score: 761; 48.7% identity (70.5% similar) in 271 aa overlap (1-271:1-250) 10 20 30 40 50 60 pF1KB8 MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKA :. .:.:..:::::.. . ... ... : .. :: . ::: .: :::: :: NP_076 MSISGTLSSYYVDSII--SHESEDAPPAKFPSGQYASS-RQPGH-AEHLEFPSCSFQPKA 10 20 30 40 50 70 80 90 100 110 120 pF1KB8 TVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALS :::::: :. .....:. ::: ::..::. : : ..::.:.::::.: . NP_076 PVFGASWAPLSPHASGSLPS-VYH-----PYIQPQG-VPPA--ESRYLRTWLEPAPRG-- 60 70 80 90 100 130 140 150 160 170 180 pF1KB8 FAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNA . :.. ..: ::: . :. : :: : : : ...:. : .: NP_076 -EAAPGQGQAAVKAEPLLGAPGELLKQGTPEYSLETSA-GREAVLSNQRPGYG----DNK 110 120 130 140 150 190 200 210 220 230 240 pF1KB8 ENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVA :.. :: : .::.::::::::.:::::::::.::::::::::::::::::::.::: NP_076 ICEGSEDKERPDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVA 160 170 180 190 200 210 250 260 270 pF1KB8 RLLNLTERQVKIWFQNRRMKMKKINKDRAKDE :::::.:::::::::::::::::.::...:. NP_076 RLLNLSERQVKIWFQNRRMKMKKMNKEQGKE 220 230 240 250 >>NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [Homo (352 aa) initn: 688 init1: 494 opt: 510 Z-score: 406.3 bits: 83.3 E(85289): 6.8e-16 Smith-Waterman score: 645; 44.2% identity (57.1% similar) in 312 aa overlap (32-268:49-347) 10 20 30 40 50 60 pF1KB8 ATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKAT :. ... : ::: :: :. ::: ... NP_055 NYYVDSLIGHEGDEVFAARFGPPGPGAQGRPAGVADGP--AATAAE---FASCSFAPRSA 20 30 40 50 60 70 70 80 90 100 110 120 pF1KB8 VFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPD-GRYMRSWLEPTPGALS ::.:::. : . :::. .:::: : :.::.: . :::.:::.:: :: . NP_055 VFSASWSAV----PSQPPAAAAMSGLYHPYV-PPPPLAASASEPGRYVRSWMEPLPGFPG 80 90 100 110 120 130 140 150 160 pF1KB8 FAGL------------PSSRP--------YGIKPEPLSARRGDCPTLDTHTLSLTDYACG :: :: : :::::: .: . :. . : : .. . . NP_055 GAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPE---TRAAPAPATAASTTSSSSTSLS 130 140 150 160 170 180 170 180 pF1KB8 SPP------VDREKQPSEG------AFSENNAENESGGDKP------------------- : : ::.: : : .: ...: .:: : NP_055 SSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSSEPSAC 190 200 210 220 230 240 190 200 210 220 pF1KB8 ---PI--------------------DPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFL :: :::::::::.::::::::::::::.:::::::::: NP_055 SDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFL 250 260 270 280 290 300 230 240 250 260 270 pF1KB8 FNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE :::::::::::::::.:::::::::::::::::::::..:.. NP_055 FNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCPKGD 310 320 330 340 350 >>NP_059105 (OMIM: 605560) homeobox protein Hox-C10 [Hom (342 aa) initn: 446 init1: 392 opt: 438 Z-score: 351.7 bits: 73.2 E(85289): 7.5e-13 Smith-Waterman score: 438; 40.9% identity (63.1% similar) in 203 aa overlap (69-267:134-329) 40 50 60 70 80 90 pF1KB8 PRQAATLAEHPDFSPCSFQSKATVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPV : : . ::. :.. . ..: NP_059 SVKEENVCCMYSAEKRAKSGPEAALYSHPLPESCLGEHEVPVPSYYRASPSYSALDKTPH 110 120 130 140 150 160 100 110 120 130 140 150 pF1KB8 AAAAPDGRY---MRSWLEPTPGALSFAGLPSSRPYGIKPE-PLSARRGDCPTLDTHTLSL ..: : . .:. :.: : : .. . :: : : . :. :: NP_059 CSGANDFEAPFEQRASLNPRAEHLESPQLGGKVSF---PETPKSDSQTPSPNEIKTEQSL 170 180 190 200 210 220 160 170 180 190 200 210 pF1KB8 TDYACGSPPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYT . ::: ..... . . : ....::. : : .: ..::: :.: :::::::: NP_059 AG-PKGSPSESEKERAKAADSSPDTSDNEA---KEEIKAENTTGNWLTAKSGRKKRCPYT 230 240 250 260 270 220 230 240 250 260 270 pF1KB8 KHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE :::::::::::::::::::.:: :... .:::.:::::::::::::.::.:.. NP_059 KHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRENRIRELT 280 290 300 310 320 330 NP_059 SNFNFT 340 >>NP_002139 (OMIM: 142984,192950) homeobox protein Hox-D (340 aa) initn: 412 init1: 383 opt: 419 Z-score: 337.3 bits: 70.5 E(85289): 4.8e-12 Smith-Waterman score: 419; 53.4% identity (73.7% similar) in 133 aa overlap (135-267:203-327) 110 120 130 140 150 160 pF1KB8 GRYMRSWLEPTPGALSFAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPV ::.: :. :: ... : : :. : NP_002 SSTVMLQLNPRGAAKPQLSAAQLQMEKKMNEPVS---GQEPTKVSQVES--PEAKGGLPE 180 190 200 210 220 170 180 190 200 210 220 pF1KB8 DREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKE .: .. : . :.:: : : ..:..::: :.: :::::::::::::::::: NP_002 ERSCLAEVSVSSPEVQEKES---KEEIKSDTPTSNWLTAKSGRKKRCPYTKHQTLELEKE 230 240 250 260 270 280 230 240 250 260 270 pF1KB8 FLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE :::::::::.:: :... .:::.:::::::::::::.::.... NP_002 FLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMSRENRIRELTANLTFS 290 300 310 320 330 340 >>NP_061824 (OMIM: 142957) homeobox protein Hox-A10 [Hom (410 aa) initn: 463 init1: 397 opt: 414 Z-score: 332.5 bits: 69.9 E(85289): 8.8e-12 Smith-Waterman score: 431; 48.8% identity (66.0% similar) in 162 aa overlap (117-267:237-397) 90 100 110 120 130 140 pF1KB8 HHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALSFAGLPSSRPYGIKPEPLSARRGDCPT :: : . : .: . . : :.. .: NP_061 GVPVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGPFPAQPPGRGFDLPPA-LASGSADAAR 210 220 230 240 250 260 150 160 170 180 190 pF1KB8 LDTHTLSLTD--YACGS---PPVDREKQPSEGAFSE-NNAENESGGDKPPIDP-----NN . : :::: :.: . : .: : . : .::. .: : .. NP_061 KERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEELSPAPSESSKASPEKDSLGNSKGE 270 280 290 300 310 320 200 210 220 230 240 250 pF1KB8 PAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQ ::::: :.: :::::::::::::::::::::::::::.:: :..: ..::.:::::::: NP_061 NAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQ 330 340 350 360 370 380 260 270 pF1KB8 NRRMKMKKINKDRAKDE :::::.::.:.. NP_061 NRRMKLKKMNRENRIRELTANFNFS 390 400 410 >>NP_067015 (OMIM: 142986) homeobox protein Hox-D11 [Hom (338 aa) initn: 394 init1: 319 opt: 350 Z-score: 284.8 bits: 60.8 E(85289): 4e-09 Smith-Waterman score: 368; 40.2% identity (67.5% similar) in 169 aa overlap (103-268:175-328) 80 90 100 110 120 130 pF1KB8 AGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALSFAGLPSSRPYGI :.: . .. : .:: ::: :. : NP_067 EPVCAAPGPPHGPAGAASNFYSAVGRNGILPQG--FDQFYEAAPGP-PFAG-PQPPPPPA 150 160 170 180 190 200 140 150 160 170 180 190 pF1KB8 KPEPL-SARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNAENESG-GDKPP :.: .: .:: : . . . ::: . . . :. .. ::. .: :. :: NP_067 PPQPEGAADKGD-PR------TGAGGGGGSPCT----KATPGSEPKGAAEGSGGDGEGPP 210 220 230 240 200 210 220 230 240 pF1KB8 IDPN-NPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQ . . . ... . . .:::::::::.: :::.::.::.:.....: ...:.::::.:: NP_067 GEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQ 250 260 270 280 290 300 250 260 270 pF1KB8 VKIWFQNRRMKMKKINKDRAKDE ::::::::::: ::.:.:: NP_067 VKIWFQNRRMKEKKLNRDRLQYFTGNPLF 310 320 330 >>NP_005915 (OMIM: 600535) homeobox protein MOX-2 [Homo (304 aa) initn: 510 init1: 242 opt: 335 Z-score: 274.0 bits: 58.6 E(85289): 1.6e-08 Smith-Waterman score: 335; 33.2% identity (55.6% similar) in 241 aa overlap (36-264:18-245) 10 20 30 40 50 60 pF1KB8 ALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLA-----EHPDFSPCSFQSKA : : . ..:: .: .. : .:.. NP_005 MEHPLFGCLRSPHATAQGLHPFSQSSLALHGRSDHMSYPELSTSSSS 10 20 30 40 70 80 90 100 110 120 pF1KB8 TVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALS .... : ... . .:::::: . : : : . . . :. . : NP_005 CIIAGYPNEEGMFASQHHRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHS 50 60 70 80 90 100 130 140 150 160 170 pF1KB8 FAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSL-----TDYACGSPPVDREKQPSEGAF . :.: : :: :. :.: ... :: : ::. : : .: :. NP_005 LCLQPDS---GGPPELGSSP----PVLCSNSSSLGSSTPTGAACA--PGDYGRQ----AL 110 120 130 140 150 180 190 200 210 220 230 pF1KB8 SENNAENESGGDKPPIDPNNPAANWLHARST--RKKRCPYTKHQTLELEKEFLFNMYLTR : .::..::: . . .. .:. .. ::.: .::.: ::: :: . :::: NP_005 SPAEAEKRSGGKRKSDSSDSQEGNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTR 160 170 180 190 200 210 240 250 260 270 pF1KB8 DRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE ::::.: :.:::::::.:::::::: :.. NP_005 LRRYEIAVNLDLTERQVKVWFQNRRMKWKRVKGGQQGAAAREKELVNVKKGTLLPSELSG 220 230 240 250 260 270 NP_005 IGAATLQQTGDSIANEDSHDSDHSSEHAHL 280 290 300 >>NP_055027 (OMIM: 605559) homeobox protein Hox-C11 [Hom (304 aa) initn: 369 init1: 312 opt: 333 Z-score: 272.5 bits: 58.3 E(85289): 1.9e-08 Smith-Waterman score: 335; 34.2% identity (62.6% similar) in 187 aa overlap (84-268:124-294) 60 70 80 90 100 110 pF1KB8 CSFQSKATVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLE ::: :.. : . ... .. ... . NP_055 AAADELMHRECLPPSTVTEILMKNEGSYGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDR 100 110 120 130 140 150 120 130 140 150 160 170 pF1KB8 PTPGALSFAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEG .: .: : ..: : :.. :. . . .: ..: . .:. NP_055 FFDNAYCGGGDPPAEP------PCSGK-GEAK-------GEPEAPPASGLASRAEAGAEA 160 170 180 190 180 190 200 210 220 230 pF1KB8 AFSENNAENESGGDKPPI--DPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYL :.:.. :.:. . .: . :: .: ::::::::.: : :::.::.::.:. NP_055 EAEEENTNPSSSGSAHSVAKEPAKGAAP--NAPRTRKKRCPYSKFQIRELEREFFFNVYI 200 210 220 230 240 250 240 250 260 270 pF1KB8 TRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE ....: ...:.::::.::::::::::::: ::...:: NP_055 NKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSGNPLL 260 270 280 290 300 272 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 11:53:41 2016 done: Fri Nov 4 11:53:42 2016 Total Scan time: 6.840 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]