FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8331, 210 aa 1>>>pF1KB8331 210 - 210 aa - 210 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.9768+/-0.000306; mu= 5.3662+/- 0.019 mean_var=304.5556+/-61.740, 0's: 0 Z-trim(125.7): 38 B-trim: 0 in 0/59 Lambda= 0.073492 statistics sampled from 50101 (50167) to 50101 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.845), E-opt: 0.2 (0.588), width: 16 Scan time: 6.630 The best scores are: opt bits E(85289) NP_066274 (OMIM: 300396) cancer/testis antigen 2 i ( 210) 1488 169.7 3.1e-42 NP_758965 (OMIM: 300396) cancer/testis antigen 2 i ( 180) 953 112.9 3.4e-25 NP_640343 (OMIM: 300657) cancer/testis antigen 1 [ ( 180) 789 95.5 5.8e-20 NP_001318 (OMIM: 300156) cancer/testis antigen 1 [ ( 180) 789 95.5 5.8e-20 >>NP_066274 (OMIM: 300396) cancer/testis antigen 2 isofo (210 aa) initn: 1488 init1: 1488 opt: 1488 Z-score: 879.3 bits: 169.7 E(85289): 3.1e-42 Smith-Waterman score: 1488; 99.5% identity (100.0% similar) in 210 aa overlap (1-210:1-210) 10 20 30 40 50 60 pF1KB8 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 PRGPHGGAASAQDGRCPCGARRPDSRLLELHITMPFSSPMEAELVRRILSRDAAPLPRPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 PRGPHGGAASAQDGRCPCGARRPDSRLLELHITMPFSSPMEAELVRRILSRDAAPLPRPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 AVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKASEQRP ::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::: NP_066 AVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKVSEQRP 130 140 150 160 170 180 190 200 210 pF1KB8 GTPGPPPPEGAQGDGCRGVAFNVMFSAPHI :::::::::::::::::::::::::::::: NP_066 GTPGPPPPEGAQGDGCRGVAFNVMFSAPHI 190 200 210 >>NP_758965 (OMIM: 300396) cancer/testis antigen 2 isofo (180 aa) initn: 953 init1: 953 opt: 953 Z-score: 573.4 bits: 112.9 E(85289): 3.4e-25 Smith-Waterman score: 953; 95.7% identity (97.2% similar) in 141 aa overlap (1-141:1-141) 10 20 30 40 50 60 pF1KB8 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_758 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 PRGPHGGAASAQDGRCPCGARRPDSRLLELHITMPFSSPMEAELVRRILSRDAAPLPRPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_758 PRGPHGGAASAQDGRCPCGARRPDSRLLELHITMPFSSPMEAELVRRILSRDAAPLPRPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 AVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKASEQRP ::::::::::::::. . : NP_758 AVLKDFTVSGNLLFIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQAPSGQRR 130 140 150 160 170 180 >>NP_640343 (OMIM: 300657) cancer/testis antigen 1 [Homo (180 aa) initn: 789 init1: 789 opt: 789 Z-score: 479.4 bits: 95.5 E(85289): 5.8e-20 Smith-Waterman score: 789; 78.0% identity (90.8% similar) in 141 aa overlap (1-141:1-141) 10 20 30 40 50 60 pF1KB8 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::: NP_640 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 PRGPHGGAASAQDGRCPCGARRPDSRLLELHITMPFSSPMEAELVRRILSRDAAPLPRPG ::::::::::. .: : :::: :.:::::....:::..::::::.:: :..:: ::: :: NP_640 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 AVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKASEQRP ..::.::::::.: . . : NP_640 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR 130 140 150 160 170 180 >>NP_001318 (OMIM: 300156) cancer/testis antigen 1 [Homo (180 aa) initn: 789 init1: 789 opt: 789 Z-score: 479.4 bits: 95.5 E(85289): 5.8e-20 Smith-Waterman score: 789; 78.0% identity (90.8% similar) in 141 aa overlap (1-141:1-141) 10 20 30 40 50 60 pF1KB8 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::: NP_001 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 PRGPHGGAASAQDGRCPCGARRPDSRLLELHITMPFSSPMEAELVRRILSRDAAPLPRPG ::::::::::. .: : :::: :.:::::....:::..::::::.:: :..:: ::: :: NP_001 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 AVLKDFTVSGNLLFMSVRDQDREGAGRMRVVGWGLGSASPEGQKARDLRTPKHKASEQRP ..::.::::::.: . . : NP_001 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR 130 140 150 160 170 180 210 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 11:49:07 2016 done: Fri Nov 4 11:49:08 2016 Total Scan time: 6.630 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]