GENSCAN 1.0	Date run:  4-Nov-116	Time: 11:46:49

Sequence gi568815581f:49110725_49322712 : 211988 bp : 46.77% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  21999  22082   84  2  0   32  100   162 0.432  11.82
 1.02 Intr +  30548  30723  176  1  2   44   85    96 0.251   3.64
 1.03 Intr +  31311  31448  138  0  0   86   80   110 0.284   9.58
 1.04 Intr +  42076  42182  107  1  2  125  111    73 0.960  13.16
 1.05 Intr +  45842  45879   38  0  2  110  105    41 0.577   5.98
 1.06 Intr +  48313  48483  171  0  0   96   69   194 0.669  18.44
 1.07 Intr +  48995  49070   76  1  1   31   85    90 0.672   2.09
 1.08 Intr +  49831  49917   87  2  0  101  110    78 0.999  11.24
 1.09 Intr +  53364  53551  188  1  2   80   95   244 0.999  23.71
 1.10 Intr +  55390  55530  141  0  0   89   79   241 0.998  23.85
 1.11 Intr +  57957  58176  220  2  1   57   75   165 0.897   9.97
 1.12 Intr +  58799  58947  149  0  2  134    9   102 0.007   6.85
 1.13 Intr +  61436  61576  141  1  0   97   39    59 0.005   2.45
 1.14 Intr +  72219  72353  135  2  0   72   69   129 0.524  10.16
 1.15 Intr +  72690  72840  151  2  1   71   66    43 0.287   0.14
 1.16 Term +  81548  81825  278  0  2  -13   42   213 0.450   2.22
 1.17 PlyA +  82064  82069    6                               1.05

 2.03 PlyA -  83684  83679    6                               1.05
 2.02 Term -  96158  96033  126  2  0   91   45   138 0.682   8.08
 2.01 Init -  96698  96615   84  2  0   96  105   156 0.998  18.92
 2.00 Prom -  97086  97047   40                             -11.82

 3.00 Prom +  98344  98383   40                              -7.96
 3.01 Init + 100001 100117  117  1  0   90   96   202 0.938  21.40
 3.02 Intr + 100383 100491  109  2  1   89   68     5 0.417  -1.54
 3.03 Intr + 103149 103257  109  1  1   70   95    37 0.504   1.94
 3.04 Intr + 105749 105974  226  2  1   80  110   300 0.531  29.39
 3.05 Intr + 107015 107191  177  1  0   74   75   282 0.965  25.62
 3.06 Intr + 108816 108901   86  2  2  109   60    51 0.963   3.02
 3.07 Intr + 109134 109229   96  0  0   98   80   117 0.999  11.02
 3.08 Intr + 109517 109602   86  2  2   65   90    82 0.806   5.56
 3.09 Intr + 111367 111501  135  2  0   72   77    90 0.960   6.84
 3.10 Term + 111828 111991  164  1  2  100   48   243 0.999  19.60
 3.11 PlyA + 112272 112277    6                               1.05

 4.02 PlyA - 112663 112658    6                              -3.94
 4.01 Sngl - 114271 113522  750  1  0   96   47  1468 0.431 139.68
 4.00 Prom - 117355 117316   40                              -3.56

 5.11 PlyA - 117606 117601    6                              -0.45
 5.10 Term - 120194 119975  220  1  1   48   55   128 0.106   2.01
 5.09 Intr - 147185 147039  147  1  0  109   95   -10 0.002   1.15
 5.08 Intr - 179849 179683  167  2  2  125   66    34 0.308   3.66
 5.07 Intr - 188200 187908  293  2  2   90   69   251 0.679  20.25
 5.06 Intr - 191056 190923  134  0  2   72   70   -47 0.199  -7.81
 5.05 Intr - 194965 194911   55  2  1   84   98   100 0.720   8.64
 5.04 Intr - 200732 200588  145  2  1   46   99   202 0.991  16.96
 5.03 Intr - 201318 201203  116  1  2   68   94    12 0.959  -0.03
 5.02 Intr - 202121 201974  148  2  1   72  111   122 0.984  12.71
 5.01 Init - 206938 206102  837  1  0   73   96   704 0.916  64.40

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  41558  41673  116  1  2   68   80    17 0.883  -3.26
S.002 Term +  58799  59004  206  0  2  134   43   150 0.989  12.63


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581f:49110725_49322712|GENSCAN_predicted_peptide_1|759_aa
GGAVGGLAARLRDIRQSEGGGIRDDFGRILVIILVLGIVGFMFGSMFLQAVFSSPKPELP
SPAPGVQKLKLLPEERLRNLFSYDGIWLFPKNQCKCEANKEQGGYNFQDAYGQSDLPAVK
ARRQAEFEHFQRREGLPRPLPLLVQPNLPFGYPVHGVEVMPLHTVPIPGLQFEGPDAPVY
EVTLTASLGTLNTLADVPDSVVQGRGQKQLIISTSDRKLLKFILQHVTYTSTGYQHQKYY
PHIAIDPIEPLEERTNHAVRFAPVSLESRSSVAKFPVTIRHPVIPKLYDPGPERKLRNLV
TIATKTFLRPHKLMIMLRSIREYYPDLTVIVADDSQKPLEIKDNHVEYYTMPFGKGWFAG
RNLAISQVTTKYVLWVDDDFLFNEETKIEVLVDVLEKTELDVVGGSVLGNVFQFKLLLEQ
SENGACLHKRMGFFQPLDGFPSCVVTSGVVNFFLAHTERLQRVGFDPRLQRVAHSEFFID
GLGTLLVGSCPEVIIGHQSRSPVVDSELAALEKTYNTYRSNTLTRVGGCVRQLLLMIVGV
LLSISLDMAATRGSSGSSWNLFLSIWLVARFQVHRYQQHENGLIQKVGVTGGQFFWLEIS
VATVPLPEFLSCIRKNELFVLSCPVSLPSLSSGHPLPALAEPRAFMDLKEEEVHADWSMS
SHGQAGRVRPHIANPASLLPFRPPSPRRSAGRHDIPGTRNAGNTKDAEALATPPVGPRSR
AQSLKHGHRCRSGKAAQSPPSLRRLAAALRSQQVPWCNG

>gi568815581f:49110725_49322712|GENSCAN_predicted_CDS_1|2280_bp
ggcggggcagtcggcggcctggctgctaggctccgtgacatccggcagtctgagggcggc
gggattcgggatgacttcgggcggatattggtcataatcctggtacttggcattgttgga
tttatgttcggaagcatgttccttcaagcagtgttcagcagccccaagccagaactccca
agtcctgccccgggtgtccagaagctgaagcttctgcctgaggaacgtctcaggaacctc
ttttcctacgatggaatctggctgttcccgaaaaatcagtgcaaatgtgaagccaacaaa
gagcagggaggttacaactttcaggatgcctatggccagagcgacctcccagcggtgaaa
gcgaggagacaggctgaatttgaacactttcagaggagagaagggctgccccgcccactg
cccctgctggtccagcccaacctcccctttgggtacccagtccacggagtggaggtgatg
cccctgcacacggttcccatcccaggcctccagtttgaaggacccgatgcccccgtctat
gaggtcaccctgacagcttctctggggacactgaacacccttgctgatgtcccagacagt
gtggtgcagggcagaggccagaagcagctgatcatttctaccagtgaccggaagctgttg
aagttcattcttcagcacgtgacatacaccagcacggggtaccagcaccagaagtactat
ccccacattgccattgaccccatagagccactcgaggagagaacaaatcatgctgtgcgc
tttgcacctgtgagtctggagtccaggtcctcagtggccaagtttccagtgaccatccgc
catcctgtcatacccaagctatacgaccctggaccagagaggaagctcagaaacctggtt
accattgctaccaagactttcctccgcccccacaagctcatgatcatgctccggagtatt
cgagagtattacccagacttgaccgtaatagtggctgatgacagccagaagcccctggaa
attaaagacaatcacgtggagtattacactatgccctttgggaagggttggtttgctggt
aggaacctggccatatctcaggtcaccaccaaatacgttctctgggtggacgatgatttt
ctcttcaacgaggagaccaagattgaggtgctggtggatgtcctggagaaaacagaactg
gacgtggtaggcggcagtgtgctgggaaatgtgttccagtttaagttgttgctggaacag
agtgagaatggggcctgccttcacaagaggatgggatttttccaacccctggatggcttc
cccagctgcgtggtgaccagtggcgtggtcaacttcttcctggcccacacggagcgactc
caaagagttggctttgatccccgcctgcaacgagtggctcactcagaattcttcattgat
gggctagggaccctactcgtggggtcatgcccagaagtgattataggtcaccagtctcgg
tctccagtggtggactcagaactggctgccctagagaagacctacaatacataccggtcc
aacaccctcacccgggtaggtggctgtgttcgacagctgttgctcatgatagttggggtc
ctcctcagcatcagtcttgacatggctgcaaccaggggatcctcgggatcctcctggaat
ctcttcctcagcatctggctcgtggcaaggtttcaggtacatcgttatcagcagcatgaa
aacggactaatacagaaagttggtgttactgggggtcaatttttctggctggaaatctct
gtagccacagtgcctttgcctgagttcttgtcctgcatccggaagaatgagctgttcgtc
ctgtcctgtcctgtctccctgccctctttgtcctctggccatcctctgcctgctctggct
gagcccagggcttttatggacctcaaagaggaggaagtgcatgccgattggtccatgagc
agccatgggcaggccggaagagtccggccccacatcgccaaccccgccagcctgctgcct
ttccgacctcccagcccccggaggagcgcaggaagacatgatatccccgggaccagaaac
gccgggaacacgaaggacgcagaagccctcgccacgccgcccgtggggccccggtccagg
gcccagtccctcaaacacggacaccgctgccgctctggaaaggccgcccagagccctcct
agcttgaggagactcgcggccgccttaagaagccagcaggtcccatggtgtaatggttag

>gi568815581f:49110725_49322712|GENSCAN_predicted_peptide_2|69_aa
MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPEDKNPF
KEKGGCLIS

>gi568815581f:49110725_49322712|GENSCAN_predicted_CDS_2|210_bp
atggcccaggatctcagcgagaaggacctgttgaagatggaggtggagcagctgaagaaa
gaagtgaaaaacacaagaattccgatttccaaagcgggaaaggaaatcaaggagtacgtg
gaggcccaagcaggaaacgatccttttctcaaaggcatccctgaggacaagaatcccttc
aaggagaaaggtggctgtctgataagctga

>gi568815581f:49110725_49322712|GENSCAN_predicted_peptide_3|434_aa
MAELQQLQEFEIPTGREALRGNHSALLRVADYCEDNYVQVSPQVHPSEFPRVNPETQSLR
PHTDAGDHSISRPALVKEGPELNQNLLSCLVLISWVDFFAYSIFLVTYAEEIQPRTQWKM
LALRPGLCVFQATDKRKALEETMAFTTQALASVAYQVGNLAGHTLRMLDLQGAALRQVEA
RVSTLGQMVNMHMEKVARREIGTLATVQRLPPGQKVIAPENLPPLTPYCRRPLNFGCLDD
IGHGIKDLSTQLSRTGTLSRKSIKAPATPASATLGRPPRIPEPVHLPVVPDGRLSAASSA
FSLASAGSLDPPPPPAAVEVFQRPPTLEELSPPPPDEELPLPLDLPPPPPLDGDELGLPP
PPPGFGPDEPSWVPASYLEKVVTLYPYTSQKDNELSFSEGTVICVTRRYSDGWCEGVSSE
GTGFFPGNYVEPSC

>gi568815581f:49110725_49322712|GENSCAN_predicted_CDS_3|1305_bp
atggcggagctacagcagctgcaggagtttgagatccccactggccgggaggctctgagg
ggcaaccacagtgccctgctgcgggtcgctgactactgcgaggacaactatgtgcaggtg
tcacctcaggttcatccttctgagttcccacgggtcaatccagagacccaaagcctccgt
cctcacacagatgctggcgatcattctatttccaggccggctctggtaaaggaaggtcct
gaactaaatcaaaatctgctctcctgtctggtgttaatatcctgggttgatttctttgcc
tattcaatcttcttggtgacctatgctgaggagatccagccaaggacccagtggaagatg
ctggcccttaggccagggctgtgtgtatttcaggccacagacaagcggaaggcgctggag
gagaccatggccttcactacccaggcactggccagcgtggcctaccaggtgggcaacctg
gccgggcacactctgcgcatgttggacctgcagggggccgccctgcggcaggtggaagcc
cgtgtaagcacgctgggccagatggtgaacatgcatatggagaaggtggcccgaagggag
atcggcaccttagccactgtccagcggctgccccccggccagaaggtcatcgccccagag
aacctaccccctctcacgccctactgcaggagacccctcaactttggctgcctggacgac
attggccatgggatcaaggacctcagcacgcagctgtcaagaacaggcaccctgtctcga
aagagcatcaaggcccctgccacacccgcctccgccaccttggggagaccaccccggatt
cccgagccagtgcacctgccggtggtgcccgacggcagactctccgccgcctcctctgcg
ttttccctggcctcggccggctccttggacccacctcctccaccagcagccgtcgaggtg
ttccagcggcctcccacgctggaggagttgtccccacccccaccggacgaagagctgccc
ctgccactggacctgcctcctcctccacccctggatggagatgaattggggctgcctcca
cccccaccaggatttgggcctgatgagcccagctgggtgcctgcctcatacttggagaaa
gtggtgacactgtacccatacaccagccagaaggacaatgagctctccttctctgagggc
actgtcatctgtgtcactcgccgctactccgatggctggtgcgagggcgtcagctcagag
gggactggattcttccctgggaactatgtggagcccagctgctga

>gi568815581f:49110725_49322712|GENSCAN_predicted_peptide_4|249_aa
MAAQGAPRFLLTFDFDETIVDENSDDSIVRAAPGQRLPESLRATYREGFYNEYMQRVFKY
LGEQGVRPRDLSAIYEAIPLSPGMSDLLQFVAKQGACFEVILISDANTFGVESSLRAAGH
HSLFRRILSNPSGPDARGLLALRPFHTHSCARCPANMCKHKVLSDYLRERAHDGVHFERL
FYVGDGANDFCPMGLLAGGDVAFPRRGYPMHRLIQEAQKAEPSSFRASVVPWETAADVRL
HLQQVLKSC

>gi568815581f:49110725_49322712|GENSCAN_predicted_CDS_4|750_bp
atggccgcgcagggcgcgccgcgcttcctcctgaccttcgacttcgacgagactatcgtg
gacgaaaacagcgacgattcgatcgtgcgcgccgcgccgggccagcggctcccggagagc
ctgcgagccacctaccgcgagggcttctacaacgagtacatgcagcgcgtcttcaagtac
ctgggcgagcagggcgtgcggccgcgggacctgagcgccatctacgaagccatccctttg
tcgccaggcatgagcgacctgctgcagtttgtggcaaaacagggcgcctgcttcgaggtg
attctcatctccgatgccaacacctttggcgtggagagctcgctgcgcgccgccggccac
cacagcctgttccgccgcatcctcagcaacccgtcggggccggatgcgcggggactgctg
gctctgcggccgttccacacacacagctgcgcgcgctgccccgccaacatgtgcaagcac
aaggtgctcagcgactacctgcgcgagcgggcccacgacggcgtgcacttcgagcgcctc
ttctacgtgggcgacggcgccaacgacttctgccccatggggctgctggcgggcggcgac
gtggccttcccgcgccgcggctaccccatgcaccgcctcattcaggaggcccagaaggcc
gagcccagctcgttccgcgccagcgtggtgccctgggaaacggctgcagatgtgcgcctc
cacctgcaacaggtgctgaagtcgtgctga

>gi568815581f:49110725_49322712|GENSCAN_predicted_peptide_5|753_aa
MAQEDSRRGQVPSSFYHGANQELDLSTKVYKRESGSPYSVLVDTKMSKPHLHETEEQPYF
RETRAVSDVHAVKEDRENSDDTEEEEEEVSYKREQIIVEVNLNNQTLNVSKGEKGVSSQS
KETPVLKTSSEEEEEESEEEATDDSNDYGENEKQKKKEKIVEKVSVTQRRTRRAASVAAA
TTSPTPRTTRGRRKSVEPPKRKKRATKEPKAPVQKAKCEEKETLTCEKCPRVFNTRWYLE
KHMNVTHRRMQICDKCGKKFVLESELSLHQQTDCEKNIQCVSCNKSFKKLWSLHEHIKIV
HGYAEKKFSCEICEKKFYTMAHVRKHMVAHTKDMPFTCETCGKSFKRSMSLKVHSLQHSG
EKPFRCENCDERFQYKYQLRSHMSIHIGHKQFMCQWCGKDFNMKQYFDEHMKTHTGAYSL
VNGNDGVDDDDNSSAGITGLKQHTLPEVEVFKTVRGNRLKRRKTIWAQNSSRKMNMSHRE
KPFICEICGKSFTSRPNMKRHRRTHTGEKPYPCDVCGQRFRFSNMLKAHKEKCFRVTSPV
NVPPAVQIPLTTSPATPVPSVVNTATTPTPPINMNPATTITSIGGTRALGELWSMSKEML
LTFSAPKRYLLHQGTSPLGQALPPDQCNGHSSFWPHSHFDPLILTCPLAHGYVRNNGTHF
TGAKPKEKSEVANGTPQNTRCWRSRSLRGRREAWPRAARPFDVRRHRCDWTVACDVGDCG
GLRCCSSRSAGRGSGSGSGSRAFKGDAAAARGG

>gi568815581f:49110725_49322712|GENSCAN_predicted_CDS_5|2262_bp
atggcacaagaagatagccgtcgtggtcaagtgccatcttccttttatcatggtgccaac
caagaacttgacctgtccaccaaagtgtacaaaagggaatcaggaagtccttattctgtg
ttagtggacaccaagatgagcaaaccgcatctccatgaaacagaagaacagccatatttc
agggagacaagagcagtgtctgacgtgcatgctgttaaggaagaccgggagaattctgat
gacacagaggaggaagaggaagaagtctcttacaaaagggagcagatcatagtggaggta
aaccttaataatcaaacattaaatgtatctaaaggggaaaagggtgtctcttctcagtcc
aaagagactcctgttcttaagacaagcagtgaggaggaagaggaagagagtgaggaagag
gccacagatgacagcaatgactatggagagaatgaaaagcagaagaaaaaggagaagata
gtagagaaagtcagcgttacacaaaggagaaccaggagagctgcctctgttgccgcagct
accacttcccctactcccagaactacaagaggtcgtaggaagagtgtagagccacctaag
cgtaagaagcgggccacaaaggagcccaaagcaccagtccagaaagctaagtgtgaagag
aaagagactctgacctgtgagaagtgccccagggtatttaacactcgctggtacctggag
aagcacatgaacgttactcataggcgcatgcagatttgtgataaatgtggcaagaagttt
gtcctggaaagtgagctgtcccttcaccagcaaacagactgtgaaaaaaacattcagtgt
gtttcctgtaacaaatcgttcaagaaactctggtcccttcatgaacatatcaagatcgtc
catggatatgcagaaaagaaattttcctgtgaaatttgtgagaagaaattctataccatg
gctcatgtgcggaaacacatggttgcacacacaaaagacatgccatttacatgcgaaacc
tgtggaaaatcattcaaacgcagtatgtcactcaaggtgcactccttgcagcattctgga
gagaagccctttagatgcgagaactgtgacgaaaggtttcagtacaagtaccagctacgc
tcccacatgagcattcatattgggcacaaacagttcatgtgccagtggtgtggcaaggat
ttcaacatgaagcagtacttcgacgaacacatgaaaacacacactggagcttatagtctg
gtgaatggtaatgatggtgttgatgatgatgataatagcagtgctgggattacaggcttg
aaacaacacaccctgccagaagttgaagtttttaagacggttagaggaaatcgattaaaa
agaaggaaaacaatctgggctcagaattcatccagaaagatgaatatgagtcacagagag
aaaccctttatctgtgaaatctgtggcaaaagcttcaccagccgccccaacatgaagaga
caccgcagaactcacacaggcgagaagccctatccatgtgatgtgtgtggccagcggttc
cgcttctcgaacatgcttaaggcccacaaggagaagtgctttcgggtgaccagccccgtg
aatgtgccacctgctgtccagatcccacttacaacttccccagccaccccagttccttct
gtggtgaacacagccacaaccccaacccctccaatcaatatgaatcctgccaccaccatc
acatctataggaggaacaagagcactgggggaactctggagtatgagtaaggaaatgctt
ctcaccttctctgctccaaagagatatctgttacatcagggaacaagtcctctaggtcag
gcacttcctcctgaccagtgcaacgggcactccagcttctggcctcatagccactttgac
cccttgattctgacatgtcctctggctcatgggtatgtcagaaataatggcacccatttt
acaggtgcaaaaccaaaggaaaaaagtgaagtggccaatggcacaccacaaaatacaaga
tgctggcgctcccggagcctccggggcaggagggaggcgtggcctcgggcggcccgcccc
tttgatgtgcgccggcaccgctgcgattggacagtcgcttgtgacgttggggactgcggt
gggctccgctgctgcagcagccgcagcgccggccgcggctccggctccggctccggctcc
cgggcatttaaaggggacgcggcggctgcccgggggggatga