FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8293, 302 aa 1>>>pF1KB8293 302 - 302 aa - 302 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.1937+/-0.000376; mu= 2.5009+/- 0.023 mean_var=166.3658+/-34.158, 0's: 0 Z-trim(118.9): 5 B-trim: 1163 in 1/53 Lambda= 0.099436 statistics sampled from 32277 (32282) to 32277 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.379), width: 16 Scan time: 5.810 The best scores are: opt bits E(85289) NP_061039 (OMIM: 610851) AP-1 complex-associated r ( 302) 1994 297.7 1.9e-80 XP_016863867 (OMIM: 610851) PREDICTED: AP-1 comple ( 247) 1555 234.7 1.5e-61 XP_016863868 (OMIM: 610851) PREDICTED: AP-1 comple ( 214) 1174 180.0 3.7e-45 NP_001121898 (OMIM: 610851) AP-1 complex-associate ( 269) 1174 180.0 4.4e-45 XP_016863869 (OMIM: 610851) PREDICTED: AP-1 comple ( 142) 922 143.7 2e-34 >>NP_061039 (OMIM: 610851) AP-1 complex-associated regul (302 aa) initn: 1994 init1: 1994 opt: 1994 Z-score: 1565.3 bits: 297.7 E(85289): 1.9e-80 Smith-Waterman score: 1994; 99.7% identity (100.0% similar) in 302 aa overlap (1-302:1-302) 10 20 30 40 50 60 pF1KB8 MGNCCWTQCFGLLRKEAGRLQRVGGGGGSKYFRTCSRGEHLTIEFENLVESDEGESPGSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 MGNCCWTQCFGLLRKEAGRLQRVGGGGGSKYFRTCSRGEHLTIEFENLVESDEGESPGSS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 HRPLTEEEIVDLRERHYDSIAEKQKDLDEKIQKELALQEEKLRLEEEALYAAQREAARAA ::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::: NP_061 HRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKELALQEEKLRLEEEALYAAQREAARAA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 KQRKLLEQERQRIVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 KQRKLLEQERQRIVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 TPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 TPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 NKKTGSNPTSASDDSNGLEWENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTDQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 NKKTGSNPTSASDDSNGLEWENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTDQQ 250 260 270 280 290 300 pF1KB8 TR :: NP_061 TR >>XP_016863867 (OMIM: 610851) PREDICTED: AP-1 complex-as (247 aa) initn: 1555 init1: 1555 opt: 1555 Z-score: 1226.2 bits: 234.7 E(85289): 1.5e-61 Smith-Waterman score: 1555; 99.6% identity (100.0% similar) in 241 aa overlap (62-302:7-247) 40 50 60 70 80 90 pF1KB8 FRTCSRGEHLTIEFENLVESDEGESPGSSHRPLTEEEIVDLRERHYDSIAEKQKDLDEKI :::::::::::::::::::::::::::.:: XP_016 MTNFNMRPLTEEEIVDLRERHYDSIAEKQKDLDKKI 10 20 30 100 110 120 130 140 150 pF1KB8 QKELALQEEKLRLEEEALYAAQREAARAAKQRKLLEQERQRIVQQYHPSNNGEYQSSGPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QKELALQEEKLRLEEEALYAAQREAARAAKQRKLLEQERQRIVQQYHPSNNGEYQSSGPE 40 50 60 70 80 90 160 170 180 190 200 210 pF1KB8 DDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGNDDSTSLDLEWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGNDDSTSLDLEWE 100 110 120 130 140 150 220 230 240 250 260 270 pF1KB8 DEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSNGLEWENDFVSAEMDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSNGLEWENDFVSAEMDD 160 170 180 190 200 210 280 290 300 pF1KB8 NGNSEYSGFVNPVLELSDSGIRHSDTDQQTR ::::::::::::::::::::::::::::::: XP_016 NGNSEYSGFVNPVLELSDSGIRHSDTDQQTR 220 230 240 >>XP_016863868 (OMIM: 610851) PREDICTED: AP-1 complex-as (214 aa) initn: 1163 init1: 1163 opt: 1174 Z-score: 931.7 bits: 180.0 E(85289): 3.7e-45 Smith-Waterman score: 1287; 85.9% identity (86.3% similar) in 241 aa overlap (62-302:7-214) 40 50 60 70 80 90 pF1KB8 FRTCSRGEHLTIEFENLVESDEGESPGSSHRPLTEEEIVDLRERHYDSIAEKQKDLDEKI :::::::::::::::::::::::::::.:: XP_016 MTNFNMRPLTEEEIVDLRERHYDSIAEKQKDLDKKI 10 20 30 100 110 120 130 140 150 pF1KB8 QKELALQEEKLRLEEEALYAAQREAARAAKQRKLLEQERQRIVQQYHPSNNGEYQSSGPE ::: :::::::::::::::::::::::: XP_016 QKE---------------------------------QERQRIVQQYHPSNNGEYQSSGPE 40 50 60 160 170 180 190 200 210 pF1KB8 DDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGNDDSTSLDLEWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGNDDSTSLDLEWE 70 80 90 100 110 120 220 230 240 250 260 270 pF1KB8 DEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSNGLEWENDFVSAEMDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSNGLEWENDFVSAEMDD 130 140 150 160 170 180 280 290 300 pF1KB8 NGNSEYSGFVNPVLELSDSGIRHSDTDQQTR ::::::::::::::::::::::::::::::: XP_016 NGNSEYSGFVNPVLELSDSGIRHSDTDQQTR 190 200 210 >>NP_001121898 (OMIM: 610851) AP-1 complex-associated re (269 aa) initn: 1163 init1: 1163 opt: 1174 Z-score: 930.3 bits: 180.0 E(85289): 4.4e-45 Smith-Waterman score: 1726; 88.7% identity (89.1% similar) in 302 aa overlap (1-302:1-269) 10 20 30 40 50 60 pF1KB8 MGNCCWTQCFGLLRKEAGRLQRVGGGGGSKYFRTCSRGEHLTIEFENLVESDEGESPGSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MGNCCWTQCFGLLRKEAGRLQRVGGGGGSKYFRTCSRGEHLTIEFENLVESDEGESPGSS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 HRPLTEEEIVDLRERHYDSIAEKQKDLDEKIQKELALQEEKLRLEEEALYAAQREAARAA ::::::::::::::::::::::::::::.::::: NP_001 HRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKE-------------------------- 70 80 90 130 140 150 160 170 180 pF1KB8 KQRKLLEQERQRIVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVL ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 -------QERQRIVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVL 100 110 120 130 140 190 200 210 220 230 240 pF1KB8 TPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYS 150 160 170 180 190 200 250 260 270 280 290 300 pF1KB8 NKKTGSNPTSASDDSNGLEWENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTDQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NKKTGSNPTSASDDSNGLEWENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTDQQ 210 220 230 240 250 260 pF1KB8 TR :: NP_001 TR >>XP_016863869 (OMIM: 610851) PREDICTED: AP-1 complex-as (142 aa) initn: 922 init1: 922 opt: 922 Z-score: 739.0 bits: 143.7 E(85289): 2e-34 Smith-Waterman score: 922; 100.0% identity (100.0% similar) in 142 aa overlap (161-302:1-142) 140 150 160 170 180 190 pF1KB8 QRIVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDL :::::::::::::::::::::::::::::: XP_016 MKSQYEVFRSSRLSSDATVLTPNTESSCDL 10 20 30 200 210 220 230 240 250 pF1KB8 MTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTS 40 50 60 70 80 90 260 270 280 290 300 pF1KB8 ASDDSNGLEWENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTDQQTR :::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ASDDSNGLEWENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTDQQTR 100 110 120 130 140 302 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 11:27:39 2016 done: Fri Nov 4 11:27:40 2016 Total Scan time: 5.810 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]