FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8268, 160 aa
  1>>>pF1KB8268 160 - 160 aa - 160 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7678+/-0.000327; mu= 10.9730+/- 0.020
 mean_var=83.5813+/-16.077, 0's: 0 Z-trim(116.5): 10  B-trim: 342 in 1/56
 Lambda= 0.140288
 statistics sampled from 27701 (27710) to 27701 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.688), E-opt: 0.2 (0.325), width:  16
 Scan time:  5.070

The best scores are:                                      opt bits E(85289)
NP_005783 (OMIM: 605500) M-phase phosphoprotein 6  ( 160) 1032 217.8 5.9e-57
XP_011521110 (OMIM: 605500) PREDICTED: M-phase pho ( 142)  927 196.5 1.3e-50
XP_016878341 (OMIM: 605500) PREDICTED: M-phase pho ( 142)  927 196.5 1.3e-50


>>NP_005783 (OMIM: 605500) M-phase phosphoprotein 6 [Hom  (160 aa)
 initn: 1032 init1: 1032 opt: 1032  Z-score: 1143.6  bits: 217.8 E(85289): 5.9e-57
Smith-Waterman score: 1032; 99.4% identity (100.0% similar) in 160 aa overlap (1-160:1-160)

               10        20        30        40        50        60
pF1KB8 MAAERKTKLSKNLLRMKFMQRGLDSETKKQLEEEEKKIISEEHWYLDLPELKEKESFIIE
       :::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MAAERKTRLSKNLLRMKFMQRGLDSETKKQLEEEEKKIISEEHWYLDLPELKEKESFIIE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EQSFLLCEDLLYGRMSFRGFNPEVEKLMLQMNAKHKAEEVEDETVELDVSDEEMARRYET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 EQSFLLCEDLLYGRMSFRGFNPEVEKLMLQMNAKHKAEEVEDETVELDVSDEEMARRYET
               70        80        90       100       110       120

              130       140       150       160
pF1KB8 LVGTIGKKFARKRDHANYEEDENGDITPIKAKKMFLKPQD
       ::::::::::::::::::::::::::::::::::::::::
NP_005 LVGTIGKKFARKRDHANYEEDENGDITPIKAKKMFLKPQD
              130       140       150       160

>>XP_011521110 (OMIM: 605500) PREDICTED: M-phase phospho  (142 aa)
 initn: 927 init1: 927 opt: 927  Z-score: 1029.5  bits: 196.5 E(85289): 1.3e-50
Smith-Waterman score: 927; 100.0% identity (100.0% similar) in 142 aa overlap (19-160:1-142)

               10        20        30        40        50        60
pF1KB8 MAAERKTKLSKNLLRMKFMQRGLDSETKKQLEEEEKKIISEEHWYLDLPELKEKESFIIE
                         ::::::::::::::::::::::::::::::::::::::::::
XP_011                   MQRGLDSETKKQLEEEEKKIISEEHWYLDLPELKEKESFIIE
                                 10        20        30        40  

               70        80        90       100       110       120
pF1KB8 EQSFLLCEDLLYGRMSFRGFNPEVEKLMLQMNAKHKAEEVEDETVELDVSDEEMARRYET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EQSFLLCEDLLYGRMSFRGFNPEVEKLMLQMNAKHKAEEVEDETVELDVSDEEMARRYET
             50        60        70        80        90       100  

              130       140       150       160
pF1KB8 LVGTIGKKFARKRDHANYEEDENGDITPIKAKKMFLKPQD
       ::::::::::::::::::::::::::::::::::::::::
XP_011 LVGTIGKKFARKRDHANYEEDENGDITPIKAKKMFLKPQD
            110       120       130       140  

>>XP_016878341 (OMIM: 605500) PREDICTED: M-phase phospho  (142 aa)
 initn: 927 init1: 927 opt: 927  Z-score: 1029.5  bits: 196.5 E(85289): 1.3e-50
Smith-Waterman score: 927; 100.0% identity (100.0% similar) in 142 aa overlap (19-160:1-142)

               10        20        30        40        50        60
pF1KB8 MAAERKTKLSKNLLRMKFMQRGLDSETKKQLEEEEKKIISEEHWYLDLPELKEKESFIIE
                         ::::::::::::::::::::::::::::::::::::::::::
XP_016                   MQRGLDSETKKQLEEEEKKIISEEHWYLDLPELKEKESFIIE
                                 10        20        30        40  

               70        80        90       100       110       120
pF1KB8 EQSFLLCEDLLYGRMSFRGFNPEVEKLMLQMNAKHKAEEVEDETVELDVSDEEMARRYET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EQSFLLCEDLLYGRMSFRGFNPEVEKLMLQMNAKHKAEEVEDETVELDVSDEEMARRYET
             50        60        70        80        90       100  

              130       140       150       160
pF1KB8 LVGTIGKKFARKRDHANYEEDENGDITPIKAKKMFLKPQD
       ::::::::::::::::::::::::::::::::::::::::
XP_016 LVGTIGKKFARKRDHANYEEDENGDITPIKAKKMFLKPQD
            110       120       130       140  




160 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:13:48 2016 done: Fri Nov  4 11:13:48 2016
 Total Scan time:  5.070 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]