Result of FASTA (omim) for pF1KB8264
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8264, 210 aa
  1>>>pF1KB8264 210 - 210 aa - 210 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3594+/-0.000359; mu= 13.8938+/- 0.022
 mean_var=70.9056+/-13.868, 0's: 0 Z-trim(113.3): 17  B-trim: 42 in 1/57
 Lambda= 0.152312
 statistics sampled from 22598 (22614) to 22598 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.265), width:  16
 Scan time:  4.090

The best scores are:                                      opt bits E(85289)
NP_002686 (OMIM: 180664) DNA-directed RNA polymera ( 210) 1381 312.3 3.7e-85
XP_011526372 (OMIM: 180664) PREDICTED: DNA-directe ( 211) 1358 307.2 1.2e-83
NP_001303252 (OMIM: 180664) DNA-directed RNA polym ( 117)  739 171.1 6.7e-43
NP_001303253 (OMIM: 180664) DNA-directed RNA polym ( 117)  739 171.1 6.7e-43
XP_016882372 (OMIM: 180664) PREDICTED: DNA-directe ( 118)  727 168.4 4.2e-42


>>NP_002686 (OMIM: 180664) DNA-directed RNA polymerases   (210 aa)
 initn: 1381 init1: 1381 opt: 1381  Z-score: 1649.9  bits: 312.3 E(85289): 3.7e-85
Smith-Waterman score: 1381; 100.0% identity (100.0% similar) in 210 aa overlap (1-210:1-210)

               10        20        30        40        50        60
pF1KB8 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA
              130       140       150       160       170       180

              190       200       210
pF1KB8 RYFGIKRGQVVKIIRPSETAGRYITYRLVQ
       ::::::::::::::::::::::::::::::
NP_002 RYFGIKRGQVVKIIRPSETAGRYITYRLVQ
              190       200       210

>>XP_011526372 (OMIM: 180664) PREDICTED: DNA-directed RN  (211 aa)
 initn: 1356 init1: 1064 opt: 1358  Z-score: 1622.5  bits: 307.2 E(85289): 1.2e-83
Smith-Waterman score: 1358; 99.1% identity (99.1% similar) in 211 aa overlap (1-210:1-211)

               10        20        30        40        50        60
pF1KB8 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTV
       ::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
XP_011 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD
               70        80        90       100       110       120

              130       140       150       160        170         
pF1KB8 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARY-KLRENQLPRIQAGDPV
       ::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
XP_011 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYSKLRENQLPRIQAGDPV
              130       140       150       160       170       180

     180       190       200       210
pF1KB8 ARYFGIKRGQVVKIIRPSETAGRYITYRLVQ
       :::::::::::::::::::::::::::::::
XP_011 ARYFGIKRGQVVKIIRPSETAGRYITYRLVQ
              190       200       210 

>>NP_001303252 (OMIM: 180664) DNA-directed RNA polymeras  (117 aa)
 initn: 739 init1: 739 opt: 739  Z-score: 891.2  bits: 171.1 E(85289): 6.7e-43
Smith-Waterman score: 739; 100.0% identity (100.0% similar) in 117 aa overlap (94-210:1-117)

            70        80        90       100       110       120   
pF1KB8 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP
                                     ::::::::::::::::::::::::::::::
NP_001                               MQEENITRALIVVQQGMTPSAKQSLVDMAP
                                             10        20        30

           130       140       150       160       170       180   
pF1KB8 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYF
               40        50        60        70        80        90

           190       200       210
pF1KB8 GIKRGQVVKIIRPSETAGRYITYRLVQ
       :::::::::::::::::::::::::::
NP_001 GIKRGQVVKIIRPSETAGRYITYRLVQ
              100       110       

>>NP_001303253 (OMIM: 180664) DNA-directed RNA polymeras  (117 aa)
 initn: 739 init1: 739 opt: 739  Z-score: 891.2  bits: 171.1 E(85289): 6.7e-43
Smith-Waterman score: 739; 100.0% identity (100.0% similar) in 117 aa overlap (94-210:1-117)

            70        80        90       100       110       120   
pF1KB8 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP
                                     ::::::::::::::::::::::::::::::
NP_001                               MQEENITRALIVVQQGMTPSAKQSLVDMAP
                                             10        20        30

           130       140       150       160       170       180   
pF1KB8 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYF
               40        50        60        70        80        90

           190       200       210
pF1KB8 GIKRGQVVKIIRPSETAGRYITYRLVQ
       :::::::::::::::::::::::::::
NP_001 GIKRGQVVKIIRPSETAGRYITYRLVQ
              100       110       

>>XP_016882372 (OMIM: 180664) PREDICTED: DNA-directed RN  (118 aa)
 initn: 725 init1: 433 opt: 727  Z-score: 876.9  bits: 168.4 E(85289): 4.2e-42
Smith-Waterman score: 727; 99.2% identity (99.2% similar) in 118 aa overlap (94-210:1-118)

            70        80        90       100       110       120   
pF1KB8 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP
                                     ::::::::::::::::::::::::::::::
XP_016                               MQEENITRALIVVQQGMTPSAKQSLVDMAP
                                             10        20        30

           130       140       150       160        170       180  
pF1KB8 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARY-KLRENQLPRIQAGDPVARY
       :::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::
XP_016 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYSKLRENQLPRIQAGDPVARY
               40        50        60        70        80        90

            190       200       210
pF1KB8 FGIKRGQVVKIIRPSETAGRYITYRLVQ
       ::::::::::::::::::::::::::::
XP_016 FGIKRGQVVKIIRPSETAGRYITYRLVQ
              100       110        




210 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:09:30 2016 done: Fri Nov  4 11:09:31 2016
 Total Scan time:  4.090 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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