Result of FASTA (omim) for pF1KB8230
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8230, 346 aa
  1>>>pF1KB8230 346 - 346 aa - 346 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3615+/-0.000341; mu= 4.8677+/- 0.021
 mean_var=213.5339+/-43.540, 0's: 0 Z-trim(121.6): 65  B-trim: 0 in 0/56
 Lambda= 0.087769
 statistics sampled from 38325 (38390) to 38325 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.45), width:  16
 Scan time:  6.220

The best scores are:                                      opt bits E(85289)
NP_006549 (OMIM: 610421) KH domain-containing, RNA ( 346) 2333 307.5 2.8e-83
XP_011515098 (OMIM: 610421) PREDICTED: KH domain-c ( 346) 2156 285.0 1.6e-76
XP_011515099 (OMIM: 610421) PREDICTED: KH domain-c ( 319) 2146 283.8 3.6e-76
XP_005250814 (OMIM: 610421) PREDICTED: KH domain-c ( 318) 2145 283.6 3.9e-76
XP_005250815 (OMIM: 610421) PREDICTED: KH domain-c ( 302) 1979 262.6   8e-70
XP_011515100 (OMIM: 610421) PREDICTED: KH domain-c ( 303) 1795 239.3 8.3e-63
NP_689901 (OMIM: 610487) KH domain-containing, RNA ( 349) 1505 202.6   1e-51
XP_011515101 (OMIM: 610421) PREDICTED: KH domain-c ( 252) 1326 179.8 5.5e-45
XP_016865834 (OMIM: 610487) PREDICTED: KH domain-c ( 299) 1283 174.4 2.7e-43
XP_016865832 (OMIM: 610487) PREDICTED: KH domain-c ( 305) 1283 174.5 2.7e-43
NP_006550 (OMIM: 602489) KH domain-containing, RNA ( 443) 1273 173.3 8.7e-43
XP_011533818 (OMIM: 610487) PREDICTED: KH domain-c ( 322) 1171 160.3 5.3e-39
XP_016865830 (OMIM: 610487) PREDICTED: KH domain-c ( 322) 1171 160.3 5.3e-39
XP_016865831 (OMIM: 610487) PREDICTED: KH domain-c ( 316) 1170 160.2 5.7e-39
XP_016865826 (OMIM: 610487) PREDICTED: KH domain-c ( 366) 1170 160.2 6.4e-39
XP_011533822 (OMIM: 610487) PREDICTED: KH domain-c ( 285) 1156 158.3 1.8e-38
XP_016865828 (OMIM: 610487) PREDICTED: KH domain-c ( 362) 1155 158.3 2.4e-38
XP_016865829 (OMIM: 610487) PREDICTED: KH domain-c ( 362) 1155 158.3 2.4e-38
XP_016865825 (OMIM: 610487) PREDICTED: KH domain-c ( 367) 1155 158.3 2.4e-38
XP_016865823 (OMIM: 610487) PREDICTED: KH domain-c ( 413) 1155 158.4 2.6e-38
XP_011533821 (OMIM: 610487) PREDICTED: KH domain-c ( 302) 1152 157.9 2.7e-38
XP_011533819 (OMIM: 610487) PREDICTED: KH domain-c ( 320) 1152 157.9 2.8e-38
XP_011533817 (OMIM: 610487) PREDICTED: KH domain-c ( 324) 1152 157.9 2.8e-38
XP_016865824 (OMIM: 610487) PREDICTED: KH domain-c ( 381) 1152 158.0 3.2e-38
XP_016865836 (OMIM: 610487) PREDICTED: KH domain-c ( 251) 1031 142.5 9.6e-34
XP_016865837 (OMIM: 610487) PREDICTED: KH domain-c ( 180)  847 119.0 7.7e-27
NP_001258807 (OMIM: 602489) KH domain-containing,  ( 404)  748 106.8 8.3e-23
XP_016865833 (OMIM: 610487) PREDICTED: KH domain-c ( 300)  662 95.8 1.3e-19
XP_016865827 (OMIM: 610487) PREDICTED: KH domain-c ( 364)  578 85.3 2.3e-16
NP_996737 (OMIM: 609590) protein quaking isoform 4 ( 319)  479 72.7 1.3e-12
NP_996735 (OMIM: 609590) protein quaking isoform 2 ( 319)  479 72.7 1.3e-12
NP_996736 (OMIM: 609590) protein quaking isoform 3 ( 325)  479 72.7 1.3e-12
XP_016866991 (OMIM: 609590) PREDICTED: protein qua ( 337)  479 72.7 1.3e-12
NP_006766 (OMIM: 609590) protein quaking isoform 1 ( 341)  479 72.7 1.3e-12
XP_016866992 (OMIM: 609590) PREDICTED: protein qua ( 318)  466 71.0 3.9e-12
XP_011534560 (OMIM: 609590) PREDICTED: protein qua ( 340)  466 71.0 4.1e-12
XP_016866993 (OMIM: 609590) PREDICTED: protein qua ( 311)  465 70.9 4.2e-12
XP_011534561 (OMIM: 609590) PREDICTED: protein qua ( 317)  465 70.9 4.3e-12
NP_001288014 (OMIM: 609590) protein quaking isofor ( 333)  465 70.9 4.4e-12
XP_011534563 (OMIM: 609590) PREDICTED: protein qua ( 198)  374 59.2 8.9e-09
XP_016865835 (OMIM: 610487) PREDICTED: KH domain-c ( 277)  313 51.6 2.4e-06
XP_011534562 (OMIM: 609590) PREDICTED: protein qua ( 293)  251 43.8 0.00058
NP_001333338 (OMIM: 601516) splicing factor 1 isof ( 433)  250 43.8 0.00084
NP_001333339 (OMIM: 601516) splicing factor 1 isof ( 456)  250 43.8 0.00087
XP_016873739 (OMIM: 601516) PREDICTED: splicing fa ( 524)  250 43.9 0.00097
XP_016873740 (OMIM: 601516) PREDICTED: splicing fa ( 524)  250 43.9 0.00097
XP_016873738 (OMIM: 601516) PREDICTED: splicing fa ( 524)  250 43.9 0.00097
XP_016873735 (OMIM: 601516) PREDICTED: splicing fa ( 542)  250 43.9 0.00099
XP_011543550 (OMIM: 601516) PREDICTED: splicing fa ( 545)  250 43.9   0.001
NP_973727 (OMIM: 601516) splicing factor 1 isoform ( 548)  250 43.9   0.001


>>NP_006549 (OMIM: 610421) KH domain-containing, RNA-bin  (346 aa)
 initn: 2333 init1: 2333 opt: 2333  Z-score: 1616.0  bits: 307.5 E(85289): 2.8e-83
Smith-Waterman score: 2333; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346)

               10        20        30        40        50        60
pF1KB8 MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 ADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LLTPRARGVPPTGYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTPAQSGAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LLTPRARGVPPTGYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTPAQSGAD
              250       260       270       280       290       300

              310       320       330       340      
pF1KB8 YYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYGRY
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_006 YYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYGRY
              310       320       330       340      

>>XP_011515098 (OMIM: 610421) PREDICTED: KH domain-conta  (346 aa)
 initn: 2156 init1: 2156 opt: 2156  Z-score: 1494.9  bits: 285.0 E(85289): 1.6e-76
Smith-Waterman score: 2156; 99.1% identity (99.4% similar) in 322 aa overlap (25-346:25-346)

               10        20        30        40        50        60
pF1KB8 MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
                               : . ::::::::::::::::::::::::::::::::
XP_011 MMIIKATNLRLFRASCFLCILSHPRKILQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 ADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LLTPRARGVPPTGYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTPAQSGAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLTPRARGVPPTGYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTPAQSGAD
              250       260       270       280       290       300

              310       320       330       340      
pF1KB8 YYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYGRY
       ::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYGRY
              310       320       330       340      

>>XP_011515099 (OMIM: 610421) PREDICTED: KH domain-conta  (319 aa)
 initn: 2146 init1: 2146 opt: 2146  Z-score: 1488.5  bits: 283.8 E(85289): 3.6e-76
Smith-Waterman score: 2146; 99.7% identity (100.0% similar) in 318 aa overlap (29-346:2-319)

               10        20        30        40        50        60
pF1KB8 MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
                                   .:::::::::::::::::::::::::::::::
XP_011                            MHEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
                                          10        20        30   

               70        80        90       100       110       120
pF1KB8 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
            40        50        60        70        80        90   

              130       140       150       160       170       180
pF1KB8 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
           100       110       120       130       140       150   

              190       200       210       220       230       240
pF1KB8 ADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG
           160       170       180       190       200       210   

              250       260       270       280       290       300
pF1KB8 LLTPRARGVPPTGYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTPAQSGAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLTPRARGVPPTGYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTPAQSGAD
           220       230       240       250       260       270   

              310       320       330       340      
pF1KB8 YYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYGRY
       ::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYGRY
           280       290       300       310         

>>XP_005250814 (OMIM: 610421) PREDICTED: KH domain-conta  (318 aa)
 initn: 2145 init1: 2145 opt: 2145  Z-score: 1487.8  bits: 283.6 E(85289): 3.9e-76
Smith-Waterman score: 2145; 100.0% identity (100.0% similar) in 317 aa overlap (30-346:2-318)

               10        20        30        40        50        60
pF1KB8 MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
                                    :::::::::::::::::::::::::::::::
XP_005                             MEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
                                           10        20        30  

               70        80        90       100       110       120
pF1KB8 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
             40        50        60        70        80        90  

              130       140       150       160       170       180
pF1KB8 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
            100       110       120       130       140       150  

              190       200       210       220       230       240
pF1KB8 ADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG
            160       170       180       190       200       210  

              250       260       270       280       290       300
pF1KB8 LLTPRARGVPPTGYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTPAQSGAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLTPRARGVPPTGYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTPAQSGAD
            220       230       240       250       260       270  

              310       320       330       340      
pF1KB8 YYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYGRY
       ::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYGRY
            280       290       300       310        

>>XP_005250815 (OMIM: 610421) PREDICTED: KH domain-conta  (302 aa)
 initn: 1979 init1: 1979 opt: 1979  Z-score: 1374.5  bits: 262.6 E(85289): 8e-70
Smith-Waterman score: 1979; 100.0% identity (100.0% similar) in 296 aa overlap (1-296:1-296)

               10        20        30        40        50        60
pF1KB8 MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 ADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LLTPRARGVPPTGYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTPAQSGAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::    
XP_005 LLTPRARGVPPTGYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTPAQRARR
              250       260       270       280       290       300

              310       320       330       340      
pF1KB8 YYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYGRY
                                                     
XP_005 VD                                            
                                                     

>>XP_011515100 (OMIM: 610421) PREDICTED: KH domain-conta  (303 aa)
 initn: 1863 init1: 1794 opt: 1795  Z-score: 1248.6  bits: 239.3 E(85289): 8.3e-63
Smith-Waterman score: 1795; 91.7% identity (94.3% similar) in 300 aa overlap (1-300:1-298)

               10        20        30        40        50        60
pF1KB8 MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 ADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LLTPRARGVPPTGYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTPAQSGAD
       :::::::::::::::::::::::::::::   .:   . : .  .  ..  :: ..  ::
XP_011 LLTPRARGVPPTGYRPPPPPPTQETYGEYGKKSG--LTQDTRHLQRGQQRASTETSHMAD
              250       260       270         280       290        

              310       320       330       340      
pF1KB8 YYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYGRY
                                                     
XP_011 TDCTV                                         
      300                                            

>>NP_689901 (OMIM: 610487) KH domain-containing, RNA-bin  (349 aa)
 initn: 1244 init1: 828 opt: 1505  Z-score: 1049.3  bits: 202.6 E(85289): 1e-51
Smith-Waterman score: 1505; 67.5% identity (84.0% similar) in 357 aa overlap (2-346:3-349)

                10        20        30        40           50      
pF1KB8  MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGK--DEEK-YIDVVINKNMKL
         :::::::::::::::::::.:: ::. .:::::: ..::  :::: :.::. :::.::
NP_689 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB8 GQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSG
       ...:::::::.:::::::::::::::::::::::: .:::::::::::::::::::::::
NP_689 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
               70        80        90       100       110       120

        120       130       140       150       160       170      
pF1KB8 EAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNG
       :::: ::.:.:::::::::::.:::.::.::::::::::.::::::::: ::.::.::::
NP_689 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
              130       140       150       160       170       180

        180       190        200        210           220       230
pF1KB8 GSENADVPVVRGKPTLRTRGVP-AP-AITRGRGGVTARPV----GVVVPRGTPTPRGVLS
        ::..     ::.  .: ::.  :: : .:::::.   :     ::..:::. . ::.: 
NP_689 -SEDSG----RGRG-IRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALP
                    190       200       210       220       230    

              240       250        260       270       280         
pF1KB8 TRGPVSRGRGLLTPRARGVPPT-GYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDN
       .  ::.:  :. ::::::.: . ::: :::: ..:.: :: ::::::  ::.:.:..:::
NP_689 V-PPVAR--GVPTPRARGAPTVPGYRAPPPP-AHEAYEEYGYDDGYGGEYDDQTYETYDN
           240         250       260        270       280       290

     290       300       310       320         330       340      
pF1KB8 SYSTPAQSGADYYDYGHGLSEETYDSYGQEEWTNSRH--KAPSARTAKGVYRDQPYGRY
       ::.: .::  .:::::::.::..::::. :::...:   :::  :.:.: ::..:::::
NP_689 SYATQTQSVPEYYDYGHGVSEDAYDSYAPEEWATTRSSLKAPPQRSARGGYREHPYGRY
              300       310       320       330       340         

>>XP_011515101 (OMIM: 610421) PREDICTED: KH domain-conta  (252 aa)
 initn: 1326 init1: 1326 opt: 1326  Z-score: 928.7  bits: 179.8 E(85289): 5.5e-45
Smith-Waterman score: 1326; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KB8 MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSEN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 ADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGRG
       ::::::::::::::::::::::::                                    
XP_011 ADVPVVRGKPTLRTRGVPAPAITRIPAQNEYPLQNRVWRIEHIRCCCLGDTVFLTLDLPF
              190       200       210       220       230       240

>>XP_016865834 (OMIM: 610487) PREDICTED: KH domain-conta  (299 aa)
 initn: 1200 init1: 815 opt: 1283  Z-score: 898.3  bits: 174.4 E(85289): 2.7e-43
Smith-Waterman score: 1283; 68.9% identity (84.3% similar) in 305 aa overlap (2-296:3-297)

                10        20        30        40           50      
pF1KB8  MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGK--DEEK-YIDVVINKNMKL
         :::::::::::::::::::.:: ::. .:::::: ..::  :::: :.::. :::.::
XP_016 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB8 GQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSG
       ...:::::::.:::::::::::::::::::::::: .:::::::::::::::::::::::
XP_016 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
               70        80        90       100       110       120

        120       130       140       150       160       170      
pF1KB8 EAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNG
       :::: ::.:.:::::::::::.:::.::.::::::::::.::::::::: ::.::.::::
XP_016 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
              130       140       150       160       170       180

        180       190        200        210           220       230
pF1KB8 GSENADVPVVRGKPTLRTRGVP-AP-AITRGRGGVTARPV----GVVVPRGTPTPRGVLS
        ::..     ::.  .: ::.  :: : .:::::.   :     ::..:::. . ::.: 
XP_016 -SEDSG----RGRG-IRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALP
                    190       200       210       220       230    

              240       250        260       270       280         
pF1KB8 TRGPVSRGRGLLTPRARGVPPT-GYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDN
       .  ::.::  . ::::::.: . ::: :::: ..:.: :: ::::::  ::.:.:..:::
XP_016 V-PPVARG--VPTPRARGAPTVPGYRAPPPP-AHEAYEEYGYDDGYGGEYDDQTYETYDN
           240         250       260        270       280       290

     290       300       310       320       330       340      
pF1KB8 SYSTPAQSGADYYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYGRY
       ::.: .:                                                  
XP_016 SYATQTQRY                                                
                                                                

>>XP_016865832 (OMIM: 610487) PREDICTED: KH domain-conta  (305 aa)
 initn: 1200 init1: 815 opt: 1283  Z-score: 898.2  bits: 174.5 E(85289): 2.7e-43
Smith-Waterman score: 1283; 68.9% identity (84.3% similar) in 305 aa overlap (2-296:3-297)

                10        20        30        40           50      
pF1KB8  MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGK--DEEK-YIDVVINKNMKL
         :::::::::::::::::::.:: ::. .:::::: ..::  :::: :.::. :::.::
XP_016 MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB8 GQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSG
       ...:::::::.:::::::::::::::::::::::: .:::::::::::::::::::::::
XP_016 SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSG
               70        80        90       100       110       120

        120       130       140       150       160       170      
pF1KB8 EAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNG
       :::: ::.:.:::::::::::.:::.::.::::::::::.::::::::: ::.::.::::
XP_016 EAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNG
              130       140       150       160       170       180

        180       190        200        210           220       230
pF1KB8 GSENADVPVVRGKPTLRTRGVP-AP-AITRGRGGVTARPV----GVVVPRGTPTPRGVLS
        ::..     ::.  .: ::.  :: : .:::::.   :     ::..:::. . ::.: 
XP_016 -SEDSG----RGRG-IRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALP
                    190       200       210       220       230    

              240       250        260       270       280         
pF1KB8 TRGPVSRGRGLLTPRARGVPPT-GYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDN
       .  ::.::  . ::::::.: . ::: :::: ..:.: :: ::::::  ::.:.:..:::
XP_016 V-PPVARG--VPTPRARGAPTVPGYRAPPPP-AHEAYEEYGYDDGYGGEYDDQTYETYDN
           240         250       260        270       280       290

     290       300       310       320       330       340      
pF1KB8 SYSTPAQSGADYYDYGHGLSEETYDSYGQEEWTNSRHKAPSARTAKGVYRDQPYGRY
       ::.: .:                                                  
XP_016 SYATQTQRTYRVCGQ                                          
              300                                               




346 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:47:14 2016 done: Fri Nov  4 10:47:15 2016
 Total Scan time:  6.220 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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