Result of FASTA (omim) for pF1KB8225
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8225, 142 aa
  1>>>pF1KB8225 142 - 142 aa - 142 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4913+/-0.000355; mu= 12.3341+/- 0.022
 mean_var=92.8119+/-18.187, 0's: 0 Z-trim(115.1): 14  B-trim: 262 in 1/52
 Lambda= 0.133129
 statistics sampled from 25345 (25358) to 25345 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.297), width:  16
 Scan time:  4.760

The best scores are:                                      opt bits E(85289)
NP_776170 (OMIM: 609768) biogenesis of lysosome-re ( 142)  873 177.0 9.2e-45
NP_001269368 (OMIM: 609768) biogenesis of lysosome ( 141)  855 173.5   1e-43
NP_001001342 (OMIM: 609768) biogenesis of lysosome (  99)  605 125.3 2.2e-29
NP_001269366 (OMIM: 609768) biogenesis of lysosome (  99)  605 125.3 2.2e-29
NP_001269367 (OMIM: 609768) biogenesis of lysosome (  99)  605 125.3 2.2e-29
XP_016871591 (OMIM: 609768) PREDICTED: biogenesis  ( 114)  547 114.3 5.5e-26
NP_001269365 (OMIM: 609768) biogenesis of lysosome (  95)  520 109.0 1.8e-24


>>NP_776170 (OMIM: 609768) biogenesis of lysosome-relate  (142 aa)
 initn: 873 init1: 873 opt: 873  Z-score: 924.6  bits: 177.0 E(85289): 9.2e-45
Smith-Waterman score: 873; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)

               10        20        30        40        50        60
pF1KB8 MAAAAEGVLATRSDEPARDDAAVETAEEAKEPAEADITELCRDMFSKMATYLTGELTATS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_776 MAAAAEGVLATRSDEPARDDAAVETAEEAKEPAEADITELCRDMFSKMATYLTGELTATS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_776 EDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQ
               70        80        90       100       110       120

              130       140  
pF1KB8 AAYKLDAYSKKLEAKYKKLEKR
       ::::::::::::::::::::::
NP_776 AAYKLDAYSKKLEAKYKKLEKR
              130       140  

>>NP_001269368 (OMIM: 609768) biogenesis of lysosome-rel  (141 aa)
 initn: 853 init1: 812 opt: 855  Z-score: 905.9  bits: 173.5 E(85289): 1e-43
Smith-Waterman score: 855; 99.3% identity (99.3% similar) in 142 aa overlap (1-142:1-141)

               10        20        30        40        50        60
pF1KB8 MAAAAEGVLATRSDEPARDDAAVETAEEAKEPAEADITELCRDMFSKMATYLTGELTATS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAAAEGVLATRSDEPARDDAAVETAEEAKEPAEADITELCRDMFSKMATYLTGELTATS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQ
               70        80        90       100       110       120

              130       140  
pF1KB8 AAYKLDAYSKKLEAKYKKLEKR
       :::::::::::: :::::::::
NP_001 AAYKLDAYSKKL-AKYKKLEKR
              130        140 

>>NP_001001342 (OMIM: 609768) biogenesis of lysosome-rel  (99 aa)
 initn: 605 init1: 605 opt: 605  Z-score: 648.5  bits: 125.3 E(85289): 2.2e-29
Smith-Waterman score: 605; 100.0% identity (100.0% similar) in 99 aa overlap (44-142:1-99)

            20        30        40        50        60        70   
pF1KB8 DEPARDDAAVETAEEAKEPAEADITELCRDMFSKMATYLTGELTATSEDYKLLENMNKLT
                                     ::::::::::::::::::::::::::::::
NP_001                               MFSKMATYLTGELTATSEDYKLLENMNKLT
                                             10        20        30

            80        90       100       110       120       130   
pF1KB8 SLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLE
               40        50        60        70        80        90

           140  
pF1KB8 AKYKKLEKR
       :::::::::
NP_001 AKYKKLEKR
                

>>NP_001269366 (OMIM: 609768) biogenesis of lysosome-rel  (99 aa)
 initn: 605 init1: 605 opt: 605  Z-score: 648.5  bits: 125.3 E(85289): 2.2e-29
Smith-Waterman score: 605; 100.0% identity (100.0% similar) in 99 aa overlap (44-142:1-99)

            20        30        40        50        60        70   
pF1KB8 DEPARDDAAVETAEEAKEPAEADITELCRDMFSKMATYLTGELTATSEDYKLLENMNKLT
                                     ::::::::::::::::::::::::::::::
NP_001                               MFSKMATYLTGELTATSEDYKLLENMNKLT
                                             10        20        30

            80        90       100       110       120       130   
pF1KB8 SLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLE
               40        50        60        70        80        90

           140  
pF1KB8 AKYKKLEKR
       :::::::::
NP_001 AKYKKLEKR
                

>>NP_001269367 (OMIM: 609768) biogenesis of lysosome-rel  (99 aa)
 initn: 605 init1: 605 opt: 605  Z-score: 648.5  bits: 125.3 E(85289): 2.2e-29
Smith-Waterman score: 605; 100.0% identity (100.0% similar) in 99 aa overlap (44-142:1-99)

            20        30        40        50        60        70   
pF1KB8 DEPARDDAAVETAEEAKEPAEADITELCRDMFSKMATYLTGELTATSEDYKLLENMNKLT
                                     ::::::::::::::::::::::::::::::
NP_001                               MFSKMATYLTGELTATSEDYKLLENMNKLT
                                             10        20        30

            80        90       100       110       120       130   
pF1KB8 SLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLE
               40        50        60        70        80        90

           140  
pF1KB8 AKYKKLEKR
       :::::::::
NP_001 AKYKKLEKR
                

>>XP_016871591 (OMIM: 609768) PREDICTED: biogenesis of l  (114 aa)
 initn: 547 init1: 547 opt: 547  Z-score: 587.4  bits: 114.3 E(85289): 5.5e-26
Smith-Waterman score: 547; 95.7% identity (97.8% similar) in 93 aa overlap (44-136:1-93)

            20        30        40        50        60        70   
pF1KB8 DEPARDDAAVETAEEAKEPAEADITELCRDMFSKMATYLTGELTATSEDYKLLENMNKLT
                                     ::::::::::::::::::::::::::::::
XP_016                               MFSKMATYLTGELTATSEDYKLLENMNKLT
                                             10        20        30

            80        90       100       110       120       130   
pF1KB8 SLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
XP_016 SLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLG
               40        50        60        70        80        90

           140                 
pF1KB8 AKYKKLEKR               
        ..                     
XP_016 NRFYFCFDVIKTASCQHILSKHNS
              100       110    

>>NP_001269365 (OMIM: 609768) biogenesis of lysosome-rel  (95 aa)
 initn: 520 init1: 520 opt: 520  Z-score: 560.5  bits: 109.0 E(85289): 1.8e-24
Smith-Waterman score: 520; 100.0% identity (100.0% similar) in 85 aa overlap (58-142:11-95)

        30        40        50        60        70        80       
pF1KB8 EAKEPAEADITELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINI
                                     ::::::::::::::::::::::::::::::
NP_001                     MRLPRKSLEVATSEDYKLLENMNKLTSLKYLEMKDIAINI
                                   10        20        30        40

        90       100       110       120       130       140  
pF1KB8 SRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKLEKR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKLEKR
               50        60        70        80        90     




142 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:43:46 2016 done: Fri Nov  4 10:43:47 2016
 Total Scan time:  4.760 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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