Result of FASTA (ccds) for pF1KB8221
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8221, 248 aa
  1>>>pF1KB8221 248 - 248 aa - 248 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1520+/-0.000723; mu= 8.7706+/- 0.044
 mean_var=153.1611+/-30.873, 0's: 0 Z-trim(114.9): 8  B-trim: 157 in 1/52
 Lambda= 0.103633
 statistics sampled from 15462 (15470) to 15462 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.475), width:  16
 Scan time:  2.510

The best scores are:                                      opt bits E(32554)
CCDS6601.1 CLTA gene_id:1211|Hs108|chr9            ( 248) 1675 261.0 5.3e-70
CCDS43802.1 CLTA gene_id:1211|Hs108|chr9           ( 236) 1221 193.1 1.4e-49
CCDS6600.1 CLTA gene_id:1211|Hs108|chr9            ( 218) 1127 179.1 2.2e-45
CCDS55306.1 CLTA gene_id:1211|Hs108|chr9           ( 230) 1094 174.1   7e-44
CCDS83364.1 CLTA gene_id:1211|Hs108|chr9           ( 196)  833 135.1 3.5e-32
CCDS4403.1 CLTB gene_id:1212|Hs108|chr5            ( 229)  648 107.5 8.3e-24
CCDS4402.1 CLTB gene_id:1212|Hs108|chr5            ( 211)  581 97.4 8.1e-21
CCDS55307.1 CLTA gene_id:1211|Hs108|chr9           ( 166)  532 90.0 1.1e-18


>>CCDS6601.1 CLTA gene_id:1211|Hs108|chr9                 (248 aa)
 initn: 1675 init1: 1675 opt: 1675  Z-score: 1370.3  bits: 261.0 E(32554): 5.3e-70
Smith-Waterman score: 1675; 100.0% identity (100.0% similar) in 248 aa overlap (1-248:1-248)

               10        20        30        40        50        60
pF1KB8 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
              190       200       210       220       230       240

               
pF1KB8 LKQAPLVH
       ::::::::
CCDS66 LKQAPLVH
               

>>CCDS43802.1 CLTA gene_id:1211|Hs108|chr9                (236 aa)
 initn: 1573 init1: 1221 opt: 1221  Z-score: 1003.7  bits: 193.1 E(32554): 1.4e-49
Smith-Waterman score: 1553; 95.2% identity (95.2% similar) in 248 aa overlap (1-248:1-236)

               10        20        30        40        50        60
pF1KB8 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
                   ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ------------AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
                          190       200       210       220        

               
pF1KB8 LKQAPLVH
       ::::::::
CCDS43 LKQAPLVH
      230      

>>CCDS6600.1 CLTA gene_id:1211|Hs108|chr9                 (218 aa)
 initn: 1127 init1: 1127 opt: 1127  Z-score: 928.2  bits: 179.1 E(32554): 2.2e-45
Smith-Waterman score: 1397; 87.9% identity (87.9% similar) in 248 aa overlap (1-248:1-218)

               10        20        30        40        50        60
pF1KB8 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV
       ::::::::::::::::::::::::::::::::::::::::::                  
CCDS66 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------
              130       140       150       160                    

              190       200       210       220       230       240
pF1KB8 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
                   ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ------------AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
                        170       180       190       200       210

               
pF1KB8 LKQAPLVH
       ::::::::
CCDS66 LKQAPLVH
               

>>CCDS55306.1 CLTA gene_id:1211|Hs108|chr9                (230 aa)
 initn: 1534 init1: 1094 opt: 1094  Z-score: 901.3  bits: 174.1 E(32554): 7e-44
Smith-Waterman score: 1501; 92.3% identity (92.3% similar) in 248 aa overlap (1-248:1-230)

               10        20        30        40        50        60
pF1KB8 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV
       :::::::::::::::::::::::::::::::::::::::::                   
CCDS55 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNS------------------
              130       140       150       160                    

              190       200       210       220       230       240
pF1KB8 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
            170       180       190       200       210       220  

               
pF1KB8 LKQAPLVH
       ::::::::
CCDS55 LKQAPLVH
            230

>>CCDS83364.1 CLTA gene_id:1211|Hs108|chr9                (196 aa)
 initn: 826 init1: 826 opt: 833  Z-score: 691.3  bits: 135.1 E(32554): 3.5e-32
Smith-Waterman score: 1218; 79.0% identity (79.0% similar) in 248 aa overlap (1-248:1-196)

               10        20        30        40        50        60
pF1KB8 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER
       ::::::::::::                                                
CCDS83 GPQPHGEPPGGP------------------------------------------------
               70                                                  

              130       140       150       160       170       180
pF1KB8 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV
           ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 ----DANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV
                 80        90       100       110       120        

              190       200       210       220       230       240
pF1KB8 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
      130       140       150       160       170       180        

               
pF1KB8 LKQAPLVH
       ::::::::
CCDS83 LKQAPLVH
      190      

>>CCDS4403.1 CLTB gene_id:1212|Hs108|chr5                 (229 aa)
 initn: 677 init1: 490 opt: 648  Z-score: 540.9  bits: 107.5 E(32554): 8.3e-24
Smith-Waterman score: 893; 61.2% identity (79.3% similar) in 227 aa overlap (21-246:13-227)

               10        20        30        40        50        60
pF1KB8 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
                           .:.  :.:::::::::::::::::::::::.:.   :.  
CCDS44         MADDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHA
                       10        20        30        40        50  

               70         80        90       100       110         
pF1KB8 GPQPHGEPPG-GPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQME
       .:   :   : : . .  ..::. .::.:::.:.::::.:.::: .:::::::::::: .
CCDS44 APAQPGPTSGAGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRK
             60        70        80        90       100       110  

     120       130       140       150       160       170         
pF1KB8 RLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGY
       ::. ::: :.  : ::.::: :.::::  ::.::..:.: :::.::.:::.:: ::.:::
CCDS44 RLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGY
            120       130       140       150       160       170  

     180       190       200       210       220       230         
pF1KB8 VTNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLI
       :            :.:::::..  : .::::::.::.::::::::::: :::::.::::.
CCDS44 V------------ASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLM
                        180       190       200       210       220

     240        
pF1KB8 SLKQAPLVH
       ::::.::  
CCDS44 SLKQTPLSR
                

>>CCDS4402.1 CLTB gene_id:1212|Hs108|chr5                 (211 aa)
 initn: 625 init1: 422 opt: 581  Z-score: 487.2  bits: 97.4 E(32554): 8.1e-21
Smith-Waterman score: 761; 55.5% identity (71.8% similar) in 227 aa overlap (21-246:13-209)

               10        20        30        40        50        60
pF1KB8 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
                           .:.  :.:::::::::::::::::::::::.:.   :.  
CCDS44         MADDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHA
                       10        20        30        40        50  

               70         80        90       100       110         
pF1KB8 GPQPHGEPPG-GPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQME
       .:   :   : : . .  ..::. .::.:::.:.::::.:.::: .:::::::::::: .
CCDS44 APAQPGPTSGAGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRK
             60        70        80        90       100       110  

     120       130       140       150       160       170         
pF1KB8 RLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGY
       ::. ::: :.  : ::.::: :.::::  ::.::..:.: :::                 
CCDS44 RLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNR-----------------
            120       130       140       150                      

     180       190       200       210       220       230         
pF1KB8 VTNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLI
                    :.:::::..  : .::::::.::.::::::::::: :::::.::::.
CCDS44 -------------ASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLM
                      160       170       180       190       200  

     240        
pF1KB8 SLKQAPLVH
       ::::.::  
CCDS44 SLKQTPLSR
            210 

>>CCDS55307.1 CLTA gene_id:1211|Hs108|chr9                (166 aa)
 initn: 872 init1: 519 opt: 532  Z-score: 449.0  bits: 90.0 E(32554): 1.1e-18
Smith-Waterman score: 940; 66.9% identity (66.9% similar) in 248 aa overlap (1-248:1-166)

               10        20        30        40        50        60
pF1KB8 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER
       ::::::::::::                                                
CCDS55 GPQPHGEPPGGP------------------------------------------------
               70                                                  

              130       140       150       160       170       180
pF1KB8 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV
           ::::::::::::::::::::::::::::::::::::::                  
CCDS55 ----DANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------
                 80        90       100       110                  

              190       200       210       220       230       240
pF1KB8 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
                   ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ------------AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
                          120       130       140       150        

               
pF1KB8 LKQAPLVH
       ::::::::
CCDS55 LKQAPLVH
      160      




248 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:41:44 2016 done: Fri Nov  4 10:41:44 2016
 Total Scan time:  2.510 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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