Result of FASTA (omim) for pF1KB8219
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8219, 317 aa
  1>>>pF1KB8219 317 - 317 aa - 317 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0169+/-0.000355; mu= 12.6757+/- 0.022
 mean_var=77.0814+/-15.447, 0's: 0 Z-trim(114.2): 15  B-trim: 0 in 0/56
 Lambda= 0.146083
 statistics sampled from 23937 (23945) to 23937 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.281), width:  16
 Scan time:  7.270

The best scores are:                                      opt bits E(85289)
NP_000993 (OMIM: 180510) 60S acidic ribosomal prot ( 317) 2027 436.5 3.4e-122
NP_444505 (OMIM: 180510) 60S acidic ribosomal prot ( 317) 2027 436.5 3.4e-122
NP_000995 (OMIM: 180530) 60S acidic ribosomal prot ( 115)  165 43.9 0.00019
NP_998890 (OMIM: 180520) 60S acidic ribosomal prot (  89)  163 43.4  0.0002
NP_000994 (OMIM: 180520) 60S acidic ribosomal prot ( 114)  163 43.5 0.00025


>>NP_000993 (OMIM: 180510) 60S acidic ribosomal protein   (317 aa)
 initn: 2027 init1: 2027 opt: 2027  Z-score: 2314.8  bits: 436.5 E(85289): 3.4e-122
Smith-Waterman score: 2027; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317)

               10        20        30        40        50        60
pF1KB8 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEA
              250       260       270       280       290       300

              310       
pF1KB8 KEESEESDEDMGFGLFD
       :::::::::::::::::
NP_000 KEESEESDEDMGFGLFD
              310       

>>NP_444505 (OMIM: 180510) 60S acidic ribosomal protein   (317 aa)
 initn: 2027 init1: 2027 opt: 2027  Z-score: 2314.8  bits: 436.5 E(85289): 3.4e-122
Smith-Waterman score: 2027; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317)

               10        20        30        40        50        60
pF1KB8 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_444 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_444 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_444 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_444 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_444 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEA
              250       260       270       280       290       300

              310       
pF1KB8 KEESEESDEDMGFGLFD
       :::::::::::::::::
NP_444 KEESEESDEDMGFGLFD
              310       

>>NP_000995 (OMIM: 180530) 60S acidic ribosomal protein   (115 aa)
 initn: 253 init1: 144 opt: 165  Z-score: 200.9  bits: 43.9 E(85289): 0.00019
Smith-Waterman score: 165; 61.1% identity (72.2% similar) in 54 aa overlap (269-317:62-115)

      240       250       260       270       280       290        
pF1KB8 HSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPA--
                                     ::.  :  :.:  ::  .:::::..:::  
NP_000 IEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGGAVAVSAAPGSAAPAAGSAPAAA
              40        50        60        70        80        90 

           300       310       
pF1KB8 ---KVEAKEESEESDEDMGFGLFD
          : : ::::::::.::::::::
NP_000 EEKKDEKKEESEESDDDMGFGLFD
             100       110     

>>NP_998890 (OMIM: 180520) 60S acidic ribosomal protein   (89 aa)
 initn: 265 init1: 110 opt: 163  Z-score: 200.4  bits: 43.4 E(85289): 0.0002
Smith-Waterman score: 163; 69.6% identity (82.6% similar) in 46 aa overlap (279-317:44-89)

      250       260       270       280          290          300  
pF1KB8 LALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTA---APAAAAAPA---KVEAK-
                                     ::.:.:. :   ::..:::::   ::::: 
NP_998 LILHDDEVTVTALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKK
            20        30        40        50        60        70   

             310       
pF1KB8 EESEESDEDMGFGLFD
       :::::::.::::::::
NP_998 EESEESDDDMGFGLFD
            80         

>>NP_000994 (OMIM: 180520) 60S acidic ribosomal protein   (114 aa)
 initn: 248 init1: 110 opt: 163  Z-score: 198.7  bits: 43.5 E(85289): 0.00025
Smith-Waterman score: 163; 69.6% identity (82.6% similar) in 46 aa overlap (279-317:69-114)

      250       260       270       280          290          300  
pF1KB8 LALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTA---APAAAAAPA---KVEAK-
                                     ::.:.:. :   ::..:::::   ::::: 
NP_000 VEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKK
       40        50        60        70        80        90        

             310       
pF1KB8 EESEESDEDMGFGLFD
       :::::::.::::::::
NP_000 EESEESDDDMGFGLFD
      100       110    




317 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:40:18 2016 done: Fri Nov  4 10:40:19 2016
 Total Scan time:  7.270 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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