Result of FASTA (omim) for pF1KB8205
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8205, 351 aa
  1>>>pF1KB8205 351 - 351 aa - 351 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0481+/-0.00027; mu= 19.1082+/- 0.017
 mean_var=75.8972+/-15.167, 0's: 0 Z-trim(120.7): 15  B-trim: 1214 in 1/56
 Lambda= 0.147218
 statistics sampled from 36236 (36252) to 36236 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.425), width:  16
 Scan time:  7.740

The best scores are:                                      opt bits E(85289)
NP_000318 (OMIM: 180721,268000,608133) rod outer s ( 351) 2413 521.1 1.4e-147
NP_000313 (OMIM: 136880,169150,179605,608133,60816 ( 346)  812 181.1 3.2e-45
NP_620598 (OMIM: 179620,602243,609057) CD151 antig ( 253)  167 44.0 0.00044
NP_620599 (OMIM: 179620,602243,609057) CD151 antig ( 253)  167 44.0 0.00044
NP_001034579 (OMIM: 179620,602243,609057) CD151 an ( 253)  167 44.0 0.00044
NP_004348 (OMIM: 179620,602243,609057) CD151 antig ( 253)  167 44.0 0.00044


>>NP_000318 (OMIM: 180721,268000,608133) rod outer segme  (351 aa)
 initn: 2413 init1: 2413 opt: 2413  Z-score: 2770.6  bits: 521.1 E(85289): 1.4e-147
Smith-Waterman score: 2413; 100.0% identity (100.0% similar) in 351 aa overlap (1-351:1-351)

               10        20        30        40        50        60
pF1KB8 MAPVLPLVLPLQPRIRLAQGLWLLSWLLALAGGVILLCSGHLLVQLRHLGTFLAPSCQFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAPVLPLVLPLQPRIRLAQGLWLLSWLLALAGGVILLCSGHLLVQLRHLGTFLAPSCQFP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VLPQAALAAGAVALGTGLVGVGASRASLNAALYPPWRGVLGPLLVAGTAGGGGLLVVALG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VLPQAALAAGAVALGTGLVGVGASRASLNAALYPPWRGVLGPLLVAGTAGGGGLLVVALG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LALALPGSLDEALEEGLVTALAHYKDTEVPGHCQAKRLVDELQLRYHCCGRHGYKDWFGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LALALPGSLDEALEEGLVTALAHYKDTEVPGHCQAKRLVDELQLRYHCCGRHGYKDWFGV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 QWVSSRYLDPGDRDVADRIQSNVEGLYLTDGVPFSCCNPHSPRPCLQNRLSDSYAHPLFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 QWVSSRYLDPGDRDVADRIQSNVEGLYLTDGVPFSCCNPHSPRPCLQNRLSDSYAHPLFD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 PRQPNQNLWAQGCHEVLLEHLQDLAGTLGSMLAVTFLLQALVLLGLRYLQTALEGLGGVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PRQPNQNLWAQGCHEVLLEHLQDLAGTLGSMLAVTFLLQALVLLGLRYLQTALEGLGGVI
              250       260       270       280       290       300

              310       320       330       340       350 
pF1KB8 DAGGETQGYLFPSGLKDMLKTAWLQGGVACRPAPEEAPPGEAPPKEDLSEA
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 DAGGETQGYLFPSGLKDMLKTAWLQGGVACRPAPEEAPPGEAPPKEDLSEA
              310       320       330       340       350 

>>NP_000313 (OMIM: 136880,169150,179605,608133,608161,61  (346 aa)
 initn: 768 init1: 666 opt: 812  Z-score: 932.9  bits: 181.1 E(85289): 3.2e-45
Smith-Waterman score: 812; 36.0% identity (69.8% similar) in 344 aa overlap (4-343:3-343)

               10        20        30        40        50        60
pF1KB8 MAPVLPLVLPLQPRIRLAQGLWLLSWLLALAGGVILLCSGHLLVQLRHLGTFLAPSCQFP
          .: . .  . :..:::::::..:. .::: .:.  .  : ..::. .  .  : .  
NP_000  MALLKVKFDQKKRVKLAQGLWLMNWFSVLAGIIIFSLGLFLKIELRKRSDVMNNS-ESH
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB8 VLPQAALAAGAVALGTGLVGVGASRASLNAALYPPWRGVLGPLLVAGTAGGGGLLVVALG
        .:.. .. :...   . ..      .:. : :  :.  : : :.  .  .  :..::: 
NP_000 FVPNSLIGMGVLSCVFNSLAGKICYDALDPAKYARWKPWLKPYLAICVLFNIILFLVALC
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KB8 LALALPGSLDEALEEGLVTALAHYKDTEVPGHCQAKRLVDELQLRYHCCGRHGYKDWFGV
         : : :::...: .:: ... .:.::..::.:  :. .: ::....::: .:..::: .
NP_000 CFL-LRGSLENTLGQGLKNGMKYYRDTDTPGRCFMKKTIDMLQIEFKCCGNNGFRDWFEI
      120        130       140       150       160       170       

              190       200       210       220       230       240
pF1KB8 QWVSSRYLDPGDRDVADRIQSNVEGLYLTDGVPFSCCNPHSPRPCLQNRLSDSYAHPLFD
       ::.:.:::: ....: :::.:::.: ::.:::::::::: :::::.: ..... ::  .:
NP_000 QWISNRYLDFSSKEVKDRIKSNVDGRYLVDGVPFSCCNPSSPRPCIQYQITNNSAHYSYD
       180       190       200       210       220       230       

              250       260       270       280       290       300
pF1KB8 PRQPNQNLWAQGCHEVLLEHLQDLAGTLGSMLAVTFLLQALVLLGLRYLQTALEGLGGVI
        .  . :::..::. .:: . ..: ...: .  . .:... . .:::::::.:.:...  
NP_000 HQTEELNLWVRGCRAALLSYYSSLMNSMGVVTLLIWLFEVTITIGLRYLQTSLDGVSNPE
       240       250       260       270       280       290       

              310       320           330       340       350 
pF1KB8 DAGGETQGYLFPSGLKDMLKTAWLQG----GVACRPAPEEAPPGEAPPKEDLSEA
       .. .:.::.:.  .. .  : :.:..    : . .   : :  :.::        
NP_000 ESESESQGWLLERSVPETWK-AFLESVKKLGKGNQVEAEGADAGQAPEAG     
       300       310        320       330       340           

>>NP_620598 (OMIM: 179620,602243,609057) CD151 antigen [  (253 aa)
 initn: 143 init1: 116 opt: 167  Z-score: 194.4  bits: 44.0 E(85289): 0.00044
Smith-Waterman score: 184; 29.0% identity (52.7% similar) in 186 aa overlap (21-206:27-191)

                     10        20        30        40        50    
pF1KB8       MAPVLPLVLPLQPRIRLAQGLWLLSWLLALAGGVILLCSGHLLVQLRHLGTFLA
                                 .:: . : ..: :.  :      ..:   ::.::
NP_620 MGEFNEKKTTCGTVCLKYLLFTYNCCFWLAG-LAVMAVGIWTLALKSDYISLLASGTYLA
               10        20        30         40        50         

           60        70        80        90       100       110    
pF1KB8 PSCQFPVLPQAALAAGAVALGTGLVGVGASRASLNAALYPPWRGVLGPLLVAGTAGGGGL
        .    .:    ..::.:.. ::..:  :.       :    :  .  ::.        :
NP_620 TAY---IL----VVAGTVVMVTGVLGCCATFKERRNLL----RLYFILLLIIFL-----L
      60               70        80        90           100        

          120       130       140       150       160       170    
pF1KB8 LVVALGLALALPGSLDEALEEGLVTALAHYKDTEVPGHCQAKRLVDELQLRYHCCGRHGY
        ..:  :: :   .:.  :.:.:  ...  :  . :::  .   ::.:: ..:::: .. 
NP_620 EIIAGILAYAYYQQLNTELKENLKDTMT--KRYHQPGHEAVTSAVDQLQQEFHCCGSNNS
           110       120       130         140       150       160 

          180       190       200       210       220       230    
pF1KB8 KDWFGVQWVSSRYLDPGDRDVADRIQSNVEGLYLTDGVPFSCCNPHSPRPCLQNRLSDSY
       .::   .:. :.  . : : : :   ..: .:                            
NP_620 QDWRDSEWIRSQ--EAGGRVVPDSCCKTVVALCGQRDHASNIYKVEGGCITKLETFIQEH
             170         180       190       200       210         

          240       250       260       270       280       290    
pF1KB8 AHPLFDPRQPNQNLWAQGCHEVLLEHLQDLAGTLGSMLAVTFLLQALVLLGLRYLQTALE
                                                                   
NP_620 LRVIGAVGIGIACVQVFGMIFTCCLYRSLKLEHY                          
     220       230       240       250                             

>>NP_620599 (OMIM: 179620,602243,609057) CD151 antigen [  (253 aa)
 initn: 143 init1: 116 opt: 167  Z-score: 194.4  bits: 44.0 E(85289): 0.00044
Smith-Waterman score: 184; 29.0% identity (52.7% similar) in 186 aa overlap (21-206:27-191)

                     10        20        30        40        50    
pF1KB8       MAPVLPLVLPLQPRIRLAQGLWLLSWLLALAGGVILLCSGHLLVQLRHLGTFLA
                                 .:: . : ..: :.  :      ..:   ::.::
NP_620 MGEFNEKKTTCGTVCLKYLLFTYNCCFWLAG-LAVMAVGIWTLALKSDYISLLASGTYLA
               10        20        30         40        50         

           60        70        80        90       100       110    
pF1KB8 PSCQFPVLPQAALAAGAVALGTGLVGVGASRASLNAALYPPWRGVLGPLLVAGTAGGGGL
        .    .:    ..::.:.. ::..:  :.       :    :  .  ::.        :
NP_620 TAY---IL----VVAGTVVMVTGVLGCCATFKERRNLL----RLYFILLLIIFL-----L
      60               70        80        90           100        

          120       130       140       150       160       170    
pF1KB8 LVVALGLALALPGSLDEALEEGLVTALAHYKDTEVPGHCQAKRLVDELQLRYHCCGRHGY
        ..:  :: :   .:.  :.:.:  ...  :  . :::  .   ::.:: ..:::: .. 
NP_620 EIIAGILAYAYYQQLNTELKENLKDTMT--KRYHQPGHEAVTSAVDQLQQEFHCCGSNNS
           110       120       130         140       150       160 

          180       190       200       210       220       230    
pF1KB8 KDWFGVQWVSSRYLDPGDRDVADRIQSNVEGLYLTDGVPFSCCNPHSPRPCLQNRLSDSY
       .::   .:. :.  . : : : :   ..: .:                            
NP_620 QDWRDSEWIRSQ--EAGGRVVPDSCCKTVVALCGQRDHASNIYKVEGGCITKLETFIQEH
             170         180       190       200       210         

          240       250       260       270       280       290    
pF1KB8 AHPLFDPRQPNQNLWAQGCHEVLLEHLQDLAGTLGSMLAVTFLLQALVLLGLRYLQTALE
                                                                   
NP_620 LRVIGAVGIGIACVQVFGMIFTCCLYRSLKLEHY                          
     220       230       240       250                             

>>NP_001034579 (OMIM: 179620,602243,609057) CD151 antige  (253 aa)
 initn: 143 init1: 116 opt: 167  Z-score: 194.4  bits: 44.0 E(85289): 0.00044
Smith-Waterman score: 184; 29.0% identity (52.7% similar) in 186 aa overlap (21-206:27-191)

                     10        20        30        40        50    
pF1KB8       MAPVLPLVLPLQPRIRLAQGLWLLSWLLALAGGVILLCSGHLLVQLRHLGTFLA
                                 .:: . : ..: :.  :      ..:   ::.::
NP_001 MGEFNEKKTTCGTVCLKYLLFTYNCCFWLAG-LAVMAVGIWTLALKSDYISLLASGTYLA
               10        20        30         40        50         

           60        70        80        90       100       110    
pF1KB8 PSCQFPVLPQAALAAGAVALGTGLVGVGASRASLNAALYPPWRGVLGPLLVAGTAGGGGL
        .    .:    ..::.:.. ::..:  :.       :    :  .  ::.        :
NP_001 TAY---IL----VVAGTVVMVTGVLGCCATFKERRNLL----RLYFILLLIIFL-----L
      60               70        80        90           100        

          120       130       140       150       160       170    
pF1KB8 LVVALGLALALPGSLDEALEEGLVTALAHYKDTEVPGHCQAKRLVDELQLRYHCCGRHGY
        ..:  :: :   .:.  :.:.:  ...  :  . :::  .   ::.:: ..:::: .. 
NP_001 EIIAGILAYAYYQQLNTELKENLKDTMT--KRYHQPGHEAVTSAVDQLQQEFHCCGSNNS
           110       120       130         140       150       160 

          180       190       200       210       220       230    
pF1KB8 KDWFGVQWVSSRYLDPGDRDVADRIQSNVEGLYLTDGVPFSCCNPHSPRPCLQNRLSDSY
       .::   .:. :.  . : : : :   ..: .:                            
NP_001 QDWRDSEWIRSQ--EAGGRVVPDSCCKTVVALCGQRDHASNIYKVEGGCITKLETFIQEH
             170         180       190       200       210         

          240       250       260       270       280       290    
pF1KB8 AHPLFDPRQPNQNLWAQGCHEVLLEHLQDLAGTLGSMLAVTFLLQALVLLGLRYLQTALE
                                                                   
NP_001 LRVIGAVGIGIACVQVFGMIFTCCLYRSLKLEHY                          
     220       230       240       250                             

>>NP_004348 (OMIM: 179620,602243,609057) CD151 antigen [  (253 aa)
 initn: 143 init1: 116 opt: 167  Z-score: 194.4  bits: 44.0 E(85289): 0.00044
Smith-Waterman score: 184; 29.0% identity (52.7% similar) in 186 aa overlap (21-206:27-191)

                     10        20        30        40        50    
pF1KB8       MAPVLPLVLPLQPRIRLAQGLWLLSWLLALAGGVILLCSGHLLVQLRHLGTFLA
                                 .:: . : ..: :.  :      ..:   ::.::
NP_004 MGEFNEKKTTCGTVCLKYLLFTYNCCFWLAG-LAVMAVGIWTLALKSDYISLLASGTYLA
               10        20        30         40        50         

           60        70        80        90       100       110    
pF1KB8 PSCQFPVLPQAALAAGAVALGTGLVGVGASRASLNAALYPPWRGVLGPLLVAGTAGGGGL
        .    .:    ..::.:.. ::..:  :.       :    :  .  ::.        :
NP_004 TAY---IL----VVAGTVVMVTGVLGCCATFKERRNLL----RLYFILLLIIFL-----L
      60               70        80        90           100        

          120       130       140       150       160       170    
pF1KB8 LVVALGLALALPGSLDEALEEGLVTALAHYKDTEVPGHCQAKRLVDELQLRYHCCGRHGY
        ..:  :: :   .:.  :.:.:  ...  :  . :::  .   ::.:: ..:::: .. 
NP_004 EIIAGILAYAYYQQLNTELKENLKDTMT--KRYHQPGHEAVTSAVDQLQQEFHCCGSNNS
           110       120       130         140       150       160 

          180       190       200       210       220       230    
pF1KB8 KDWFGVQWVSSRYLDPGDRDVADRIQSNVEGLYLTDGVPFSCCNPHSPRPCLQNRLSDSY
       .::   .:. :.  . : : : :   ..: .:                            
NP_004 QDWRDSEWIRSQ--EAGGRVVPDSCCKTVVALCGQRDHASNIYKVEGGCITKLETFIQEH
             170         180       190       200       210         

          240       250       260       270       280       290    
pF1KB8 AHPLFDPRQPNQNLWAQGCHEVLLEHLQDLAGTLGSMLAVTFLLQALVLLGLRYLQTALE
                                                                   
NP_004 LRVIGAVGIGIACVQVFGMIFTCCLYRSLKLEHY                          
     220       230       240       250                             




351 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:32:24 2016 done: Fri Nov  4 10:32:25 2016
 Total Scan time:  7.740 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com