Result of FASTA (omim) for pF1KB8199
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8199, 206 aa
  1>>>pF1KB8199 206 - 206 aa - 206 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4400+/-0.00028; mu= 15.6326+/- 0.018
 mean_var=99.1516+/-19.994, 0's: 0 Z-trim(120.8): 12  B-trim: 0 in 0/58
 Lambda= 0.128802
 statistics sampled from 36586 (36600) to 36586 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.429), width:  16
 Scan time:  5.080

The best scores are:                                      opt bits E(85289)
NP_001032726 (OMIM: 602542) transcription factor B ( 206) 1334 257.0 1.5e-68
NP_001198 (OMIM: 602542) transcription factor BTF3 ( 162) 1015 197.6 9.1e-51
NP_001106673 (OMIM: 601234) nascent polypeptide-as ( 215)  165 39.8  0.0039
NP_001307122 (OMIM: 601234) nascent polypeptide-as ( 215)  165 39.8  0.0039
NP_005585 (OMIM: 601234) nascent polypeptide-assoc ( 215)  165 39.8  0.0039
NP_001106672 (OMIM: 601234) nascent polypeptide-as ( 215)  165 39.8  0.0039
XP_006719481 (OMIM: 601234) PREDICTED: nascent pol ( 219)  165 39.8   0.004
NP_001307123 (OMIM: 601234) nascent polypeptide-as ( 219)  165 39.8   0.004
XP_006719483 (OMIM: 601234) PREDICTED: nascent pol ( 219)  165 39.8   0.004


>>NP_001032726 (OMIM: 602542) transcription factor BTF3   (206 aa)
 initn: 1334 init1: 1334 opt: 1334  Z-score: 1351.5  bits: 257.0 E(85289): 1.5e-68
Smith-Waterman score: 1334; 100.0% identity (100.0% similar) in 206 aa overlap (1-206:1-206)

               10        20        30        40        50        60
pF1KB8 MRRTGAPAQADSRGRGRARGGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRRTGAPAQADSRGRGRARGGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 QVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPL
              130       140       150       160       170       180

              190       200      
pF1KB8 ATGEDDDDEVPDLVENFDEASKNEAN
       ::::::::::::::::::::::::::
NP_001 ATGEDDDDEVPDLVENFDEASKNEAN
              190       200      

>>NP_001198 (OMIM: 602542) transcription factor BTF3 iso  (162 aa)
 initn: 1015 init1: 1015 opt: 1015  Z-score: 1032.4  bits: 197.6 E(85289): 9.1e-51
Smith-Waterman score: 1015; 100.0% identity (100.0% similar) in 162 aa overlap (45-206:1-162)

           20        30        40        50        60        70    
pF1KB8 RGRARGGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQAQVRIGGKGTARRKK
                                     ::::::::::::::::::::::::::::::
NP_001                               MKETIMNQEKLAKLQAQVRIGGKGTARRKK
                                             10        20        30

           80        90       100       110       120       130    
pF1KB8 KVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTI
               40        50        60        70        80        90

          140       150       160       170       180       190    
pF1KB8 TGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDDDEVPDLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDDDEVPDLV
              100       110       120       130       140       150

          200      
pF1KB8 ENFDEASKNEAN
       ::::::::::::
NP_001 ENFDEASKNEAN
              160  

>>NP_001106673 (OMIM: 601234) nascent polypeptide-associ  (215 aa)
 initn:  70 init1:  54 opt: 165  Z-score: 177.3  bits: 39.8 E(85289): 0.0039
Smith-Waterman score: 165; 23.6% identity (60.5% similar) in 195 aa overlap (16-206:3-189)

               10        20        30        40        50        60
pF1KB8 MRRTGAPAQADSRGRGRARGGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQA
                      :.:    :. :  : ::  . :. : : .  :.. . :.  . ::
NP_001              MPGEATETVPATEQELPQPQAETGS-GTESDSDESVPELEEQDSTQA
                            10        20         30        40      

               70          80        90       100       110        
pF1KB8 QVRIGGKGTARR--KKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHF
        .. .  ..: .  .. : .   . ..:: . ...:::. ...:. .:..  ... .. .
NP_001 TTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVI
         50        60        70        80        90       100      

      120       130       140       150       160       170        
pF1KB8 NNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKA
       ..: :  : :..:. . :.:. ..:...      ::.:    ...  .::. . . . ..
NP_001 TKPDVYKSPASDTYIVFGEAKIEDLSQQ-----AQLAAAE--KFKVQGEAVSNIQENTQT
        110       120       130            140         150         

      180       190         200                                
pF1KB8 PLATGEDDDDEVPDL-VENFD-EASKNEAN                          
       : .  :....:: .  ::  : :   ..::                          
NP_001 PTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM
     160       170       180       190       200       210     

>>NP_001307122 (OMIM: 601234) nascent polypeptide-associ  (215 aa)
 initn:  70 init1:  54 opt: 165  Z-score: 177.3  bits: 39.8 E(85289): 0.0039
Smith-Waterman score: 165; 23.6% identity (60.5% similar) in 195 aa overlap (16-206:3-189)

               10        20        30        40        50        60
pF1KB8 MRRTGAPAQADSRGRGRARGGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQA
                      :.:    :. :  : ::  . :. : : .  :.. . :.  . ::
NP_001              MPGEATETVPATEQELPQPQAETGS-GTESDSDESVPELEEQDSTQA
                            10        20         30        40      

               70          80        90       100       110        
pF1KB8 QVRIGGKGTARR--KKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHF
        .. .  ..: .  .. : .   . ..:: . ...:::. ...:. .:..  ... .. .
NP_001 TTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVI
         50        60        70        80        90       100      

      120       130       140       150       160       170        
pF1KB8 NNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKA
       ..: :  : :..:. . :.:. ..:...      ::.:    ...  .::. . . . ..
NP_001 TKPDVYKSPASDTYIVFGEAKIEDLSQQ-----AQLAAAE--KFKVQGEAVSNIQENTQT
        110       120       130            140         150         

      180       190         200                                
pF1KB8 PLATGEDDDDEVPDL-VENFD-EASKNEAN                          
       : .  :....:: .  ::  : :   ..::                          
NP_001 PTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM
     160       170       180       190       200       210     

>>NP_005585 (OMIM: 601234) nascent polypeptide-associate  (215 aa)
 initn:  70 init1:  54 opt: 165  Z-score: 177.3  bits: 39.8 E(85289): 0.0039
Smith-Waterman score: 165; 23.6% identity (60.5% similar) in 195 aa overlap (16-206:3-189)

               10        20        30        40        50        60
pF1KB8 MRRTGAPAQADSRGRGRARGGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQA
                      :.:    :. :  : ::  . :. : : .  :.. . :.  . ::
NP_005              MPGEATETVPATEQELPQPQAETGS-GTESDSDESVPELEEQDSTQA
                            10        20         30        40      

               70          80        90       100       110        
pF1KB8 QVRIGGKGTARR--KKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHF
        .. .  ..: .  .. : .   . ..:: . ...:::. ...:. .:..  ... .. .
NP_005 TTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVI
         50        60        70        80        90       100      

      120       130       140       150       160       170        
pF1KB8 NNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKA
       ..: :  : :..:. . :.:. ..:...      ::.:    ...  .::. . . . ..
NP_005 TKPDVYKSPASDTYIVFGEAKIEDLSQQ-----AQLAAAE--KFKVQGEAVSNIQENTQT
        110       120       130            140         150         

      180       190         200                                
pF1KB8 PLATGEDDDDEVPDL-VENFD-EASKNEAN                          
       : .  :....:: .  ::  : :   ..::                          
NP_005 PTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM
     160       170       180       190       200       210     

>>NP_001106672 (OMIM: 601234) nascent polypeptide-associ  (215 aa)
 initn:  70 init1:  54 opt: 165  Z-score: 177.3  bits: 39.8 E(85289): 0.0039
Smith-Waterman score: 165; 23.6% identity (60.5% similar) in 195 aa overlap (16-206:3-189)

               10        20        30        40        50        60
pF1KB8 MRRTGAPAQADSRGRGRARGGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQA
                      :.:    :. :  : ::  . :. : : .  :.. . :.  . ::
NP_001              MPGEATETVPATEQELPQPQAETGS-GTESDSDESVPELEEQDSTQA
                            10        20         30        40      

               70          80        90       100       110        
pF1KB8 QVRIGGKGTARR--KKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHF
        .. .  ..: .  .. : .   . ..:: . ...:::. ...:. .:..  ... .. .
NP_001 TTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVI
         50        60        70        80        90       100      

      120       130       140       150       160       170        
pF1KB8 NNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKA
       ..: :  : :..:. . :.:. ..:...      ::.:    ...  .::. . . . ..
NP_001 TKPDVYKSPASDTYIVFGEAKIEDLSQQ-----AQLAAAE--KFKVQGEAVSNIQENTQT
        110       120       130            140         150         

      180       190         200                                
pF1KB8 PLATGEDDDDEVPDL-VENFD-EASKNEAN                          
       : .  :....:: .  ::  : :   ..::                          
NP_001 PTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM
     160       170       180       190       200       210     

>>XP_006719481 (OMIM: 601234) PREDICTED: nascent polypep  (219 aa)
 initn:  70 init1:  54 opt: 165  Z-score: 177.2  bits: 39.8 E(85289): 0.004
Smith-Waterman score: 165; 23.6% identity (60.5% similar) in 195 aa overlap (16-206:3-189)

               10        20        30        40        50        60
pF1KB8 MRRTGAPAQADSRGRGRARGGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQA
                      :.:    :. :  : ::  . :. : : .  :.. . :.  . ::
XP_006              MPGEATETVPATEQELPQPQAETGS-GTESDSDESVPELEEQDSTQA
                            10        20         30        40      

               70          80        90       100       110        
pF1KB8 QVRIGGKGTARR--KKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHF
        .. .  ..: .  .. : .   . ..:: . ...:::. ...:. .:..  ... .. .
XP_006 TTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVI
         50        60        70        80        90       100      

      120       130       140       150       160       170        
pF1KB8 NNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKA
       ..: :  : :..:. . :.:. ..:...      ::.:    ...  .::. . . . ..
XP_006 TKPDVYKSPASDTYIVFGEAKIEDLSQQ-----AQLAAAE--KFKVQGEAVSNIQENTQT
        110       120       130            140         150         

      180       190         200                                    
pF1KB8 PLATGEDDDDEVPDL-VENFD-EASKNEAN                              
       : .  :....:: .  ::  : :   ..::                              
XP_006 PTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMVSVQAFVP
     160       170       180       190       200       210         

>>NP_001307123 (OMIM: 601234) nascent polypeptide-associ  (219 aa)
 initn:  70 init1:  54 opt: 165  Z-score: 177.2  bits: 39.8 E(85289): 0.004
Smith-Waterman score: 165; 23.6% identity (60.5% similar) in 195 aa overlap (16-206:3-189)

               10        20        30        40        50        60
pF1KB8 MRRTGAPAQADSRGRGRARGGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQA
                      :.:    :. :  : ::  . :. : : .  :.. . :.  . ::
NP_001              MPGEATETVPATEQELPQPQAETGS-GTESDSDESVPELEEQDSTQA
                            10        20         30        40      

               70          80        90       100       110        
pF1KB8 QVRIGGKGTARR--KKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHF
        .. .  ..: .  .. : .   . ..:: . ...:::. ...:. .:..  ... .. .
NP_001 TTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVI
         50        60        70        80        90       100      

      120       130       140       150       160       170        
pF1KB8 NNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKA
       ..: :  : :..:. . :.:. ..:...      ::.:    ...  .::. . . . ..
NP_001 TKPDVYKSPASDTYIVFGEAKIEDLSQQ-----AQLAAAE--KFKVQGEAVSNIQENTQT
        110       120       130            140         150         

      180       190         200                                    
pF1KB8 PLATGEDDDDEVPDL-VENFD-EASKNEAN                              
       : .  :....:: .  ::  : :   ..::                              
NP_001 PTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMVSVQAFVP
     160       170       180       190       200       210         

>>XP_006719483 (OMIM: 601234) PREDICTED: nascent polypep  (219 aa)
 initn:  70 init1:  54 opt: 165  Z-score: 177.2  bits: 39.8 E(85289): 0.004
Smith-Waterman score: 165; 23.6% identity (60.5% similar) in 195 aa overlap (16-206:3-189)

               10        20        30        40        50        60
pF1KB8 MRRTGAPAQADSRGRGRARGGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQA
                      :.:    :. :  : ::  . :. : : .  :.. . :.  . ::
XP_006              MPGEATETVPATEQELPQPQAETGS-GTESDSDESVPELEEQDSTQA
                            10        20         30        40      

               70          80        90       100       110        
pF1KB8 QVRIGGKGTARR--KKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHF
        .. .  ..: .  .. : .   . ..:: . ...:::. ...:. .:..  ... .. .
XP_006 TTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVI
         50        60        70        80        90       100      

      120       130       140       150       160       170        
pF1KB8 NNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKA
       ..: :  : :..:. . :.:. ..:...      ::.:    ...  .::. . . . ..
XP_006 TKPDVYKSPASDTYIVFGEAKIEDLSQQ-----AQLAAAE--KFKVQGEAVSNIQENTQT
        110       120       130            140         150         

      180       190         200                                    
pF1KB8 PLATGEDDDDEVPDL-VENFD-EASKNEAN                              
       : .  :....:: .  ::  : :   ..::                              
XP_006 PTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMVSVQAFVP
     160       170       180       190       200       210         




206 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:29:23 2016 done: Fri Nov  4 10:29:24 2016
 Total Scan time:  5.080 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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