GENSCAN 1.0	Date run:  4-Nov-116	Time: 10:17:05

Sequence gi568815596r:9485289_9730452 : 245164 bp : 44.04% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.17 PlyA -    839    834    6                               1.05
 1.16 Term -   5230   4889  342  1  0   84   28   350 0.876  23.11
 1.15 Intr -   5863   5813   51  1  0  116   84     8 0.750   2.30
 1.14 Intr -   7698   7610   89  1  2   56  103    10 0.864  -1.01
 1.13 Intr -   8537   8459   79  2  1  106   74    74 0.947   6.92
 1.12 Intr -   9479   9349  131  0  2   89   82    73 0.996   7.21
 1.11 Intr -  11960  11826  135  0  0  104   89   127 0.960  14.94
 1.10 Intr -  16988  16885  104  1  2  100   79    64 0.920   6.52
 1.09 Intr -  20077  19878  200  1  2   72   94   225 0.974  19.65
 1.08 Intr -  24843  24691  153  0  0   27   95   105 0.794   5.37
 1.07 Intr -  32701  32613   89  2  2   69   95    20 0.572   0.49
 1.06 Intr -  32959  32815  145  1  1   55  110    20 0.692   0.76
 1.05 Intr -  36028  35915  114  1  0    1   92   122 0.866   4.54
 1.04 Intr -  38050  37961   90  1  0   51   68   105 0.936   4.99
 1.03 Intr -  40976  40823  154  1  1   42   83   115 0.486   6.47
 1.02 Intr -  57997  57865  133  2  1   70   86    13 0.080  -1.00
 1.01 Init -  70317  70221   97  0  1   94   28   135 0.277   6.61
 1.00 Prom -  79035  78996   40                              -4.96

 2.11 PlyA -  80531  80526    6                               1.05
 2.10 Term - 100057  99998   60  1  0   92   35    56 0.600  -1.50
 2.09 Intr - 102221 102126   96  2  0   32   79   135 0.989   7.21
 2.08 Intr - 103040 102877  164  0  2   91  107    47 0.996   6.59
 2.07 Intr - 106227 106104  124  0  1   82  111   104 0.814  12.26
 2.06 Intr - 135473 135354  120  2  0  106   84    46 0.857   6.69
 2.05 Intr - 145246 144871  376  0  1  100  105   724 0.279  70.32
 2.04 Intr - 148356 148340   17  0  2  119   93     4 0.023  -1.66
 2.03 Intr - 153947 153846  102  2  0   91   53    52 0.025   2.37
 2.02 Intr - 164100 163895  206  1  2  100   64    59 0.016   3.62
 2.01 Init - 175337 175220  118  2  1   21   61   102 0.003   0.95
 2.00 Prom - 181335 181296   40                              -3.76

 3.00 Prom + 191477 191516   40                              -2.96
 3.01 Init + 207381 207755  375  2  0   59   72   105 0.583   2.96
 3.02 Term + 208600 208725  126  0  0   64   48   119 0.750   3.78
 3.03 PlyA + 208873 208878    6                               1.05

 4.03 PlyA - 208985 208980    6                               1.05
 4.02 Term - 212396 212270  127  1  1  131   42    14 0.532  -1.14
 4.01 Init - 214286 214195   92  2  2   76   63    82 0.314   4.68
 4.00 Prom - 220142 220103   40                              -3.06

 5.00 Prom + 225747 225786   40                              -2.66
 5.01 Init + 235600 235623   24  0  0  106   72    35 0.502   3.39
 5.02 Intr + 239329 239504  176  0  2  123   66    24 0.598   2.44
 5.03 Intr + 240003 240136  134  0  2   65   76    65 0.411   3.29

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:9485289_9730452|GENSCAN_predicted_peptide_1|701_aa
MRQSLLFLTSVVPFVLAPRPPDDPGFGPHQRLEKLDSLLSDYDILSLSNIQQHSVRKRDL
QTSTHVETLLTFSALKSAYKFILELVHRVKRRADPDPMKNTCKLLVVADHRFYRYMGRGE
ESTTTNYLIELIDRVDDIYRNTSWDNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKS
YPNEEKDAWDVKMLLEQFSFDIAEEASKVCLAHLFTYQDFDMGTLGLAYVGSPRANSHGG
VCPKAYYSPVGKKNIYLNSGLTSTKNYGKTILTKEADLVTTHELGHNFGAEHDPDGLAEC
APNEDQGGKYVMYPIAVSGDHENNKMFSNCSKQSIYKTIESKAQECFQERSNKVCGNSRV
DEGEECDPGIMYLNNDTCCNSDCTLKEGVQCSDRNSPCCKNCQFETAQKKCQEAINATCK
GVSYCTGNSSECPPPGNAEDDTVCLDLGKCKDGKCIPFCEREQQLESCACNETDNSCKVC
CRDLSGRCVPYVDAEQKNLFLRKGKPCTVGFCDMNGKCEKRVQDVIERFWDFIDQLSINT
FGKFLADNIVGSVLVFSLIFWIPFSILVHCVDKKLDKQYESLSLFHPSNVEMLSSMDSAS
VRIIKPFPAPQTPGRLQPAPVIPSAPAAPKLDHQRMDTIQEDPSTDSHMDEDGFEKDPFP
NSSTAAKSFEDLTDHPVTRSEKAASFKLQRQNRVDSKETEC

>gi568815596r:9485289_9730452|GENSCAN_predicted_CDS_1|2106_bp
atgaggcagtctctcctattcctgaccagcgtggttcctttcgtgctggcgccgcgacct
ccggatgacccgggcttcggcccccaccagagactcgagaagcttgattctttgctctca
gactacgatattctctctttatctaatatccagcagcattcggtaagaaaaagagatcta
cagacttcaacacatgtagaaacactactaactttttcagctttgaaaagtgcatacaaa
ttcatattagagcttgttcatcgagtgaaaagaagagctgacccagatcccatgaagaac
acgtgtaaattattggtggtagcagatcatcgcttctacagatacatgggcagaggggaa
gagagtacaactacaaattacttaatagagctaattgacagagttgatgacatctatcgg
aacacttcatgggataatgcaggttttaaaggctatggaatacagatagagcagattcgc
attctcaagtctccacaagaggtaaaacctggtgaaaagcactacaacatggcaaaaagt
tacccaaatgaagaaaaggatgcttgggatgtgaagatgttgctagagcaatttagcttt
gatatagctgaggaagcatctaaagtttgcttggcacaccttttcacataccaagatttt
gatatgggaactcttggattagcttatgttggctctcccagagcaaacagccatggaggt
gtttgtccaaaggcttattatagcccagttgggaagaaaaatatctatttgaatagtggt
ttgacgagcacaaagaattatggtaaaaccatccttacaaaggaagctgacctggttaca
actcatgaattgggacataattttggagcagaacatgatccggatggtctagcagaatgt
gccccgaatgaggaccagggagggaaatatgtcatgtatcccatagctgtgagtggcgat
cacgagaacaataagatgttttcaaactgcagtaaacaatcaatctataagaccattgaa
agtaaggcccaggagtgttttcaagaacgcagcaataaagtttgtgggaactcgagggtg
gatgaaggagaagagtgtgatcctggcatcatgtatctgaacaacgacacctgctgcaac
agcgactgcacgttgaaggaaggtgtccagtgcagtgacaggaacagtccttgctgtaaa
aactgtcagtttgagactgcccagaagaagtgccaggaggcgattaatgctacttgcaaa
ggcgtgtcctactgcacaggtaatagcagtgagtgcccgcctccaggaaatgctgaagat
gacactgtttgcttggatcttggcaagtgtaaggatgggaaatgcatccctttctgcgag
agggaacagcagctggagtcctgtgcatgtaatgaaactgacaactcctgcaaggtgtgc
tgcagggacctttctggccgctgtgtgccctatgtcgatgctgaacaaaagaacttattt
ttgaggaaaggaaagccctgtacagtaggattttgtgacatgaatggcaaatgtgagaaa
cgagtacaggatgtaattgaacgattttgggatttcattgaccagctgagcatcaatact
tttggaaagtttttagcagacaacatcgttgggtctgtcctggttttctccttgatattt
tggattcctttcagcattcttgtccattgtgtggataagaaattggataaacagtatgaa
tctctgtctctgtttcaccccagtaacgtcgaaatgctgagcagcatggattctgcatcg
gttcgcattatcaaaccctttcctgcgccccagactccaggccgcctgcagcctgcccct
gtgatcccttcggcgccagcagctccaaaactggaccaccagagaatggacaccatccag
gaagaccccagcacagactcacatatggacgaggatgggtttgagaaggaccccttccca
aatagcagcacagctgccaagtcatttgaggatctcacggaccatccggtcaccagaagt
gaaaaggctgcctcctttaaactgcagcgtcagaatcgtgttgacagcaaagaaacagag
tgctaa

>gi568815596r:9485289_9730452|GENSCAN_predicted_peptide_2|460_aa
MRAARPPPPAAERPSRYLQAGIQPALERFRHKCREQPRTESSSLLLSPGEGEEGQSSPEP
HTPSQVIANIYHVFAKCQDNSKHLKGISSFYICRNPRRQVQFPDEDVQEVCVTVVAAGFR
LNTFQQFVCCRILQSEAGHISLELLHTSSRGSSRCGSALALALLALRPGPGPAPAMEKTE
LIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWRVISSI
EQKTDTSDKKLQLIKDYREKVESELRSICTTVLEYRFEDQENHRCDNEERRIVDIRHWVI
KVPVNSWKPAKDLELLDKYLIANATNPESKVFYLKMKGDYFRYLAEVACGDDRKQTIDNS
QGAYQEAFDISKKEMQPTHPIRLGLALNFSVFYYEILNNPELACTLAKTAFDEAIAELDT
LNEDSYKDSTLIMQLLRDNLTLWTSDSAGEECDAAEGAEN

>gi568815596r:9485289_9730452|GENSCAN_predicted_CDS_2|1383_bp
atgagggcagccagacccccgcctcctgctgctgaacgaccctcgcgctacctgcaggcg
ggaattcaaccagctttggaaaggttcagacataaatgcagggagcagccccgaacagaa
agctcttcactgctgctcagccctggagagggggaggaggggcaaagctcccccgaaccc
cacaccccctcgcaagtgattgctaatatttatcatgtgtttgccaagtgccaggacaat
agcaaacacctcaaaggcattagctcattttatatttgcaggaaccctaggaggcaagtc
cagtttccagatgaggacgttcaggaagtttgtgtgacggttgtagcagctggattccgt
ctgaacacattccagcaatttgtctgctgcaggatccttcagagtgaggctggccacatc
agtctggagcttcttcataccagctctcgaggctcctcccgctgcgggtcggcgctcgcc
ctcgctctcctcgccctccgccccggccccggccccgcgcccgccatggagaagactgag
ctgatccagaaggccaagctggccgagcaggccgagcgctacgacgacatggccacctgc
atgaaggcagtgaccgagcagggcgccgagctgtccaacgaggagcgcaacctgctctcc
gtggcctacaagaacgtggtcgggggccgcaggtccgcctggagggtcatctctagcatc
gagcagaagaccgacacctccgacaagaagttgcagctgattaaggactatcgggagaaa
gtggagtccgagctgagatccatctgcaccacggtgctggaatataggtttgaagaccag
gaaaatcacagatgtgataatgaagaaaggagaatagttgatattagacattgggtaata
aaagtccctgttaattcctggaaaccagctaaagatctggaattgttggataaatattta
atagccaatgcaactaatccagagagtaaggtcttctatctgaaaatgaagggtgattac
ttccggtaccttgctgaagttgcgtgtggtgatgatcgaaaacaaacgatagataattcc
caaggagcttaccaagaggcatttgatataagcaagaaagagatgcaacccacacaccca
atccgcctggggcttgctcttaacttttctgtattttactatgagattcttaataaccca
gagcttgcctgcacgctggctaaaacggcttttgatgaggccattgctgaacttgataca
ctgaatgaagactcatacaaagacagcaccctcatcatgcagttgcttagagacaaccta
acactttggacatcagacagtgcaggagaagaatgtgatgcggcagaaggggctgaaaac
taa

>gi568815596r:9485289_9730452|GENSCAN_predicted_peptide_3|166_aa
MLDTIRFSWGEEGGNGCWKGSTGDSYSSLLDLLPPNSLKLVEQEEDEKSCLYVVPLESLK
NPQYPDLRNEHHRESKAVVGSCQACEQRDGIHAQGFLTAGPRPPHSTSALCPAMVQRQGV
VKGPRVRVSHFTALSCASAAQVFECSVASHPCLSVGGFCEASEKQE

>gi568815596r:9485289_9730452|GENSCAN_predicted_CDS_3|501_bp
atgctggacacaatcaggttctcctggggggaggagggagggaatggctgctggaagggt
tctaccggggactcctacagcagcttgttagatctccttcctcccaattccctgaagttg
gtggaacaggaagaggacgagaagtcatgtttgtatgttgtccccttggaatctctcaaa
aatccgcaatatcccgatttgagaaatgagcatcacagagaaagcaaagcggtagttgga
agctgccaagcttgtgagcaacgagacggaatccacgcccagggctttctaacggcgggg
ccacgccctccacactccacctcggccctctgccctgcgatggtgcagagacagggtgtg
gtcaaggggcctagggtccgtgtgtcccatttcactgcactgtcctgtgccagcgctgcc
caagtcttcgagtgctccgtggcctcccacccctgcctctccgtgggcggcttctgtgag
gcctccgagaagcaggaatga

>gi568815596r:9485289_9730452|GENSCAN_predicted_peptide_4|72_aa
MMHTAREHTVLPRATQCVTRDAEQCEILAPRRRLEVSSQEKSKSGSWDWGMQAQLRTYTL
TTDGRFKRIHEC

>gi568815596r:9485289_9730452|GENSCAN_predicted_CDS_4|219_bp
atgatgcatacagctcgagaacacacggttctgccccgggccactcagtgtgtcactcgg
gatgctgaacaatgtgagatcctggctccaaggagaagattggaggtctcttctcaggag
aagagtaaaagtggttcttgggattgggggatgcaggcacagttgaggacatacactctc
accacagatggcaggtttaagcgaatacatgaatgctga

>gi568815596r:9485289_9730452|GENSCAN_predicted_peptide_5|112_aa
MAPRSIGQAHWQPCPSSSTRMSRPLPGCPLTASTQTPAFQGSLAQAPPKWNLCVPTPQLF
HSHICTRMVRWLSAGKRVWVKVQGFHAELTQLHPSDSTSLSLSFFICRAVSX

>gi568815596r:9485289_9730452|GENSCAN_predicted_CDS_5|336_bp
atggctccacgctccatcggccaggcacactggcaaccttgcccttcctcgagcacgcgg
atgtccagacctctccctggctgccccctcactgcctccacccaaaccccagcctttcag
ggcagccttgcccaggcacctcccaagtggaacctgtgcgtgcctacgccccagctgttc
cactcccacatctgcactcgcatggtccgctggcttagtgcaggcaaacgggtctgggtc
aaagtgcaaggcttccacgcggagttaacacagctgcatccaagtgactcaacctctctg
agcctcagtttcttcatctgtagagcagttagtgnn