Result of FASTA (omim) for pF1KB8172
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8172, 140 aa
  1>>>pF1KB8172 140 - 140 aa - 140 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4203+/-0.000346; mu= 11.5948+/- 0.022
 mean_var=69.0128+/-14.005, 0's: 0 Z-trim(114.1): 28  B-trim: 251 in 1/51
 Lambda= 0.154387
 statistics sampled from 23683 (23711) to 23683 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.278), width:  16
 Scan time:  4.060

The best scores are:                                      opt bits E(85289)
NP_000336 (OMIM: 127750,163890,168601,605543) alph ( 140)  879 204.2 5.8e-53
NP_001139527 (OMIM: 127750,163890,168601,605543) a ( 140)  879 204.2 5.8e-53
NP_001139526 (OMIM: 127750,163890,168601,605543) a ( 140)  879 204.2 5.8e-53
XP_016864052 (OMIM: 127750,163890,168601,605543) P ( 140)  879 204.2 5.8e-53
XP_011530510 (OMIM: 127750,163890,168601,605543) P ( 140)  879 204.2 5.8e-53
XP_016864051 (OMIM: 127750,163890,168601,605543) P ( 140)  879 204.2 5.8e-53
NP_009292 (OMIM: 127750,163890,168601,605543) alph ( 112)  612 144.6 3.8e-35
XP_011530506 (OMIM: 127750,163890,168601,605543) P ( 170)  612 144.7 5.4e-35
XP_011530509 (OMIM: 127750,163890,168601,605543) P ( 170)  612 144.7 5.4e-35
XP_011530508 (OMIM: 127750,163890,168601,605543) P ( 170)  612 144.7 5.4e-35
XP_011530505 (OMIM: 127750,163890,168601,605543) P ( 170)  612 144.7 5.4e-35
XP_011530507 (OMIM: 127750,163890,168601,605543) P ( 170)  612 144.7 5.4e-35
XP_006714979 (OMIM: 127750,602569) PREDICTED: beta ( 134)  459 110.6 8.1e-25
NP_003076 (OMIM: 127750,602569) beta-synuclein iso ( 134)  459 110.6 8.1e-25
NP_001001502 (OMIM: 127750,602569) beta-synuclein  ( 134)  459 110.6 8.1e-25
XP_006714978 (OMIM: 127750,602569) PREDICTED: beta ( 152)  407 99.1 2.7e-21
XP_006714977 (OMIM: 127750,602569) PREDICTED: beta ( 152)  407 99.1 2.7e-21
XP_011532942 (OMIM: 127750,602569) PREDICTED: beta ( 152)  407 99.1 2.7e-21
NP_003078 (OMIM: 602998) gamma-synuclein isoform 1 ( 127)  388 94.8 4.4e-20
NP_001304966 (OMIM: 127750,602569) beta-synuclein  ( 104)  383 93.6 8.1e-20
NP_001304964 (OMIM: 127750,602569) beta-synuclein  ( 104)  383 93.6 8.1e-20
NP_001317049 (OMIM: 602998) gamma-synuclein isofor ( 126)  241 62.0 3.2e-10
NP_001304963 (OMIM: 127750,602569) beta-synuclein  ( 120)  235 60.7 7.7e-10
NP_001304965 (OMIM: 127750,602569) beta-synuclein  ( 120)  235 60.7 7.7e-10


>>NP_000336 (OMIM: 127750,163890,168601,605543) alpha-sy  (140 aa)
 initn: 879 init1: 879 opt: 879  Z-score: 1071.9  bits: 204.2 E(85289): 5.8e-53
Smith-Waterman score: 879; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KB8 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
               70        80        90       100       110       120

              130       140
pF1KB8 DNEAYEMPSEEGYQDYEPEA
       ::::::::::::::::::::
NP_000 DNEAYEMPSEEGYQDYEPEA
              130       140

>>NP_001139527 (OMIM: 127750,163890,168601,605543) alpha  (140 aa)
 initn: 879 init1: 879 opt: 879  Z-score: 1071.9  bits: 204.2 E(85289): 5.8e-53
Smith-Waterman score: 879; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KB8 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
               70        80        90       100       110       120

              130       140
pF1KB8 DNEAYEMPSEEGYQDYEPEA
       ::::::::::::::::::::
NP_001 DNEAYEMPSEEGYQDYEPEA
              130       140

>>NP_001139526 (OMIM: 127750,163890,168601,605543) alpha  (140 aa)
 initn: 879 init1: 879 opt: 879  Z-score: 1071.9  bits: 204.2 E(85289): 5.8e-53
Smith-Waterman score: 879; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KB8 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
               70        80        90       100       110       120

              130       140
pF1KB8 DNEAYEMPSEEGYQDYEPEA
       ::::::::::::::::::::
NP_001 DNEAYEMPSEEGYQDYEPEA
              130       140

>>XP_016864052 (OMIM: 127750,163890,168601,605543) PREDI  (140 aa)
 initn: 879 init1: 879 opt: 879  Z-score: 1071.9  bits: 204.2 E(85289): 5.8e-53
Smith-Waterman score: 879; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KB8 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
               70        80        90       100       110       120

              130       140
pF1KB8 DNEAYEMPSEEGYQDYEPEA
       ::::::::::::::::::::
XP_016 DNEAYEMPSEEGYQDYEPEA
              130       140

>>XP_011530510 (OMIM: 127750,163890,168601,605543) PREDI  (140 aa)
 initn: 879 init1: 879 opt: 879  Z-score: 1071.9  bits: 204.2 E(85289): 5.8e-53
Smith-Waterman score: 879; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KB8 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
               70        80        90       100       110       120

              130       140
pF1KB8 DNEAYEMPSEEGYQDYEPEA
       ::::::::::::::::::::
XP_011 DNEAYEMPSEEGYQDYEPEA
              130       140

>>XP_016864051 (OMIM: 127750,163890,168601,605543) PREDI  (140 aa)
 initn: 879 init1: 879 opt: 879  Z-score: 1071.9  bits: 204.2 E(85289): 5.8e-53
Smith-Waterman score: 879; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KB8 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
               70        80        90       100       110       120

              130       140
pF1KB8 DNEAYEMPSEEGYQDYEPEA
       ::::::::::::::::::::
XP_016 DNEAYEMPSEEGYQDYEPEA
              130       140

>>NP_009292 (OMIM: 127750,163890,168601,605543) alpha-sy  (112 aa)
 initn: 612 init1: 612 opt: 612  Z-score: 751.9  bits: 144.6 E(85289): 3.8e-35
Smith-Waterman score: 618; 80.0% identity (80.0% similar) in 140 aa overlap (1-140:1-112)

               10        20        30        40        50        60
pF1KB8 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
       ::::::::::::::::::::::::::::::::::::::::::                  
NP_009 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGK------------------
               70        80        90       100                    

              130       140
pF1KB8 DNEAYEMPSEEGYQDYEPEA
                 ::::::::::
NP_009 ----------EGYQDYEPEA
                      110  

>>XP_011530506 (OMIM: 127750,163890,168601,605543) PREDI  (170 aa)
 initn: 612 init1: 612 opt: 612  Z-score: 749.2  bits: 144.7 E(85289): 5.4e-35
Smith-Waterman score: 612; 100.0% identity (100.0% similar) in 102 aa overlap (1-102:1-102)

               10        20        30        40        50        60
pF1KB8 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
       ::::::::::::::::::::::::::::::::::::::::::                  
XP_011 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKKHPKYKPSKRQENVVMFL
               70        80        90       100       110       120

              130       140                              
pF1KB8 DNEAYEMPSEEGYQDYEPEA                              
                                                         
XP_011 VQVKKICFPQVGKPFSFLRFFSSFFFQVKAFWRSQYPSLKVARSHVYICN
              130       140       150       160       170

>>XP_011530509 (OMIM: 127750,163890,168601,605543) PREDI  (170 aa)
 initn: 612 init1: 612 opt: 612  Z-score: 749.2  bits: 144.7 E(85289): 5.4e-35
Smith-Waterman score: 612; 100.0% identity (100.0% similar) in 102 aa overlap (1-102:1-102)

               10        20        30        40        50        60
pF1KB8 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
       ::::::::::::::::::::::::::::::::::::::::::                  
XP_011 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKKHPKYKPSKRQENVVMFL
               70        80        90       100       110       120

              130       140                              
pF1KB8 DNEAYEMPSEEGYQDYEPEA                              
                                                         
XP_011 VQVKKICFPQVGKPFSFLRFFSSFFFQVKAFWRSQYPSLKVARSHVYICN
              130       140       150       160       170

>>XP_011530508 (OMIM: 127750,163890,168601,605543) PREDI  (170 aa)
 initn: 612 init1: 612 opt: 612  Z-score: 749.2  bits: 144.7 E(85289): 5.4e-35
Smith-Waterman score: 612; 100.0% identity (100.0% similar) in 102 aa overlap (1-102:1-102)

               10        20        30        40        50        60
pF1KB8 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
       ::::::::::::::::::::::::::::::::::::::::::                  
XP_011 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKKHPKYKPSKRQENVVMFL
               70        80        90       100       110       120

              130       140                              
pF1KB8 DNEAYEMPSEEGYQDYEPEA                              
                                                         
XP_011 VQVKKICFPQVGKPFSFLRFFSSFFFQVKAFWRSQYPSLKVARSHVYICN
              130       140       150       160       170




140 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:14:03 2016 done: Fri Nov  4 10:14:03 2016
 Total Scan time:  4.060 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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