GENSCAN 1.0	Date run:  4-Nov-116	Time: 10:14:25

Sequence gi568815594r:89629193_89935667 : 306475 bp : 35.71% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  12203  12354  152  2  2  108   45    94 0.316   5.99
 1.02 Intr +  18474  19367  894  1  0  -16   40   396 0.116  14.75
 1.03 Intr +  19651  19967  317  2  2   17   86   145 0.211   2.06
 1.04 Term +  26611  26709   99  0  0  127   37    68 0.432   2.75
 1.05 PlyA +  27552  27557    6                               1.05

 2.00 Prom +  33904  33943   40                              -2.85
 2.01 Init +  43186  43405  220  0  1   88   30   203 0.733  13.34
 2.02 Term +  43709  44220  512  0  2   16   39   251 0.717   6.55
 2.03 PlyA +  44383  44388    6                               1.05

 3.00 Prom +  45046  45085   40                              -7.85
 3.01 Init +  45544  45702  159  0  0   70   57    79 0.503   2.88
 3.02 Term +  50296  50982  687  0  0   75   37   393 0.748  25.52
 3.03 PlyA +  54482  54487    6                               1.05

 4.03 PlyA -  54523  54518    6                               1.05
 4.02 Term -  59997  59865  133  2  1   36   41   154 0.432   2.08
 4.01 Init -  69094  69054   41  1  2   90   70    48 0.315   2.91
 4.00 Prom -  69167  69128   40                              -3.35

 5.04 PlyA -  69377  69372    6                               1.05
 5.03 Term -  87762  87668   95  1  2   84   38   136 0.792   5.21
 5.02 Intr -  94177  94027  151  1  1   57   61   142 0.908   7.21
 5.01 Init -  95629  95627    3  1  0   55  115     0 0.537  -0.55
 5.00 Prom -  96911  96872   40                              -5.45

 6.00 Prom + 102342 102381   40                              -3.45
 6.01 Init + 102683 102815  133  1  1   50   85   162 0.826  12.45
 6.02 Intr + 118579 118661   83  2  2  100   94    67 0.407   6.94
 6.03 Intr + 124039 124227  189  0  0   50   47    97 0.124   0.66
 6.04 Term + 139506 139661  156  2  0   17   48   115 0.036  -2.65
 6.05 PlyA + 139836 139841    6                               1.05

 7.05 PlyA - 140046 140041    6                               1.05
 7.04 Term - 142393 142269  125  2  2   38   53   139 0.716   2.97
 7.03 Intr - 146588 146441  148  2  1   37   33   107 0.094  -1.01
 7.02 Intr - 160920 160781  140  1  2   75   81    97 0.610   6.96
 7.01 Init - 168378 168249  130  0  1   43   70   118 0.602   5.86
 7.00 Prom - 182973 182934   40                              -3.35

 8.05 PlyA - 183337 183332    6                               1.05
 8.04 Term - 183738 183637  102  0  0   99   35    82 0.778   1.30
 8.03 Intr - 193196 193054  143  0  2   59   86   176 0.933  13.65
 8.02 Intr - 198992 198951   42  0  0   72  115    31 0.547   1.49
 8.01 Init - 206475 206355  121  0  1   78   82   135 0.569  12.30
 8.00 Prom - 206796 206757   40                              -6.65

 9.00 Prom + 214394 214433   40                              -6.05
 9.01 Init + 222132 222308  177  2  0   83   32   144 0.116   7.61
 9.02 Intr + 227072 227352  281  1  2   38   65   151 0.097   3.15
 9.03 Intr + 227803 227940  138  1  0   47   36   123 0.456   1.66
 9.04 Intr + 246658 246825  168  1  0    7   45   159 0.010   1.64
 9.05 Intr + 265815 266402  588  0  0   57   69   412 0.001  27.01
 9.06 Intr + 280084 280157   74  1  2   60   75    40 0.052  -1.97
 9.07 Intr + 293976 294080  105  1  0  125   40   108 0.616   8.97
 9.08 Intr + 298603 298776  174  2  0   70   93   134 0.635  11.09
 9.09 Intr + 305618 306394  777  0  0  101   35   548 0.087  41.32

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 260844 260945  102  2  0   95   55   120 0.872   6.70
S.002 Init + 305692 306394  703  0  1   44   35   573 0.907  42.77


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815594r:89629193_89935667|GENSCAN_predicted_peptide_1|487_aa
XKQRNAAGPSEWSLPLPAPKQLASSCAHVLQFLPAKGSGKYPALSTQYYRAQLEKQEQTH
SKASRRQEITKIRAELKEIETQKTLQKINESRSWFFEKINKIRRPLARLIKKKREKNQID
AIKNDKGDITPNPTEIQTTIREYYKHLYTNELENLEEMDKFLNTYNLPRLNQEEVESLNR
PITGCEIEALINSLPTKKSPGTDGLTAKFYHRYKEELVPFLLKRFQSVEKERILPNSFYE
ASIILIPKPGRDATKEENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQ
GWFNICKSINVIQHINRTNDKNHIIISIDAEEAFNKIQQPFMLKTLNKLAPNLLKLISNF
SKVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLIRDVKDLFKENY
KPLLNEIKEDTNKWKNIPCSWIGRINIMKMATLPKDLSFVHMKRENAGVSSTYKDVSPIA
CHPYDLI

>gi568815594r:89629193_89935667|GENSCAN_predicted_CDS_1|1464_bp
nncaagcagcggaatgcagcaggtccgagtgaatggagtttgcccctaccagcaccgaag
cagctggctagttcttgcgctcatgtactccagttcctgcccgcaaaggggtcagggaaa
tatcctgctttatcaacacaatactatagagcacaactagagaagcaagagcaaacacat
tcaaaagctagcagaaggcaagaaataactaagatcagagcagaactgaaggagatagag
acacaaaaaacccttcaaaaaatcaatgaatccaggagctggttttttgaaaagatcaac
aaaattcgtagaccactagcaaggctaataaagaagaaaagagagaagaatcagatagat
gcaataaaaaatgataaaggggatatcacccccaatcccacagaaatacaaactaccatc
agagaatactataaacacctctacacaaatgaactagaaaatctagaagaaatggataaa
ttcctcaacacatacaacctcccaagactaaaccaggaagaagttgaatctcttaataga
ccaataacaggctgtgaaattgaggcattaattaatagcttaccaaccaaaaaaagtcca
ggaacagacggattgacagccaaattctaccataggtacaaggaggagctggtaccattc
cttctgaaacgattccaatcagtagaaaaagagagaatcctccctaactcattttatgag
gccagcatcatcctgataccaaagcctggcagagacgcaacaaaagaagaaaattttcga
ccaatatccttgatgaacatcgatgcaaaaatcctcaataaaatactggcaaaccgaatc
cagcagcacatcaaaaagcttatccaccatgatcaagtgggcttcatccctgggatgcaa
ggctggttcaacatatgcaaatcaataaatgtaatccagcatataaacagaaccaatgac
aaaaaccacattattatctcaatagatgcagaagaggccttcaacaaaattcaacagccc
ttcatgctaaaaactctcaataaattagccccaaatctccttaagctgataagcaacttc
agcaaagtctcaggatacaaaatcaacgtgcaaaaatcacaagcattcttatacaccaat
aacagacaaacagagagccaaatcatgagtgaactcccattcacaattgcttcaaagaga
ataaaatacctaggaatccaacttataagggatgtgaaggaccttttcaaggaaaactac
aaacctctgctcaacgaaataaaagaggacacaaacaaatggaagaacattccatgctca
tggataggaagaatcaatatcatgaaaatggccacactgcccaaggacctttcctttgtg
cacatgaagagagagaacgctggtgtctcctctacttataaggacgtcagtcctattgca
tgccacccttatgacctcatttaa

>gi568815594r:89629193_89935667|GENSCAN_predicted_peptide_2|243_aa
MGKKQHKKAENSKNQNASSPKDQNSLPAKEQNWMENEFDKLTEVGFRRWVITNNSELKEY
VLTQCKEAKNLEKTRQANIQIQEIQRTPQRYSSRRTTPRHIIVRFTKVEMKEKMLRAARE
KGRVTHKGKPIRLTADFSAETLQARREWGPIFNILKENNFQPRISYPAKLSFISEGEIKS
FTDKQILRDFVTTRPALQELLKEAVNMETNNQYQPLQKIPNCKDHQCCEETASINGQNNQ
LTS

>gi568815594r:89629193_89935667|GENSCAN_predicted_CDS_2|732_bp
atggggaaaaagcagcacaaaaaggctgaaaattccaaaaaccagaatgcctcttctcca
aaggatcaaaactccttgccagcaaaggaacaaaactggatggagaatgagtttgacaaa
ttgacagaagtaggcttcagaaggtgggtaataacaaacaactccgagctaaaggagtat
gttctaacccaatgcaaggaagctaagaaccttgaaaaaacaagacaggccaacatccaa
atccaggaaatacagagaacaccacaaagatactcctcgagaagaacaaccccaagacac
ataattgtcagattcaccaaggttgaaatgaaggaaaaaatgttaagggcagccagagag
aaaggtcgggttacccacaaagggaagcccatcagactaacagcagatttctctgcagaa
accctacaagccagaagagagtgggggccaatattcaacattcttaaagaaaataatttt
caacccagaatttcctatccagccaaactaagcttcataagtgaaggagaaataaaatcc
tttacagacaagcaaatactgagggattttgtcaccaccagacctgccttacaagagctc
ctgaaagaagcagtaaacatggaaacgaacaaccagtaccagccactgcaaaaaatacca
aattgtaaagaccatcaatgctgtgaagaaactgcatcaattaacgggcaaaataaccag
ctaacatcataa

>gi568815594r:89629193_89935667|GENSCAN_predicted_peptide_3|281_aa
MDKFLDTYTLPSLSQEEVESPNRPTTSSEIEAVINSLPTKKSPGPDGFTAKFEWVLGLAD
FKNEAADPRGECYSSQRWCVRSLFLQMFTCPEFLPSGGLIVSLASGVKLQTFAVSVTAHK
GGASGVVRSFRWVRGLSGFRSEAADLCSVTSLKGGTSRVVHSSRPELFCSSFLVPPSGFV
VSLASGVKLQTFAVSVTALKGGTDPKSEQQQDLLQRAKEQNFEKVEGDLSGLLRWPAFIP
LFGPNHILLIGLFYRELIGPFYRVLIGPFLHRALIGAFTKL

>gi568815594r:89629193_89935667|GENSCAN_predicted_CDS_3|846_bp
atggataaattcctggacacatacaccctcccaagtctaagccaagaagaagttgaatcc
ccgaatagaccaacaacaagttctgaaattgaggcggtaattaatagcctaccaaccaaa
aaaagtccaggaccagatggattcacagccaaatttgagtgggttcttggtcttgctgac
ttcaagaatgaagccgcagaccctcgtggtgagtgttacagttctcaaagatggtgtgtc
cggagtttgttccttcagatgttcacgtgtccagagtttcttccttctggtgggttaata
gtctcgctggcttcaggagtgaagctgcagaccttcgcagtgagtgttacagctcataaa
ggtggcgcttctggagttgttcgttccttccggtgggttcgtggtctctctggcttcagg
agtgaagctgcagacctttgcagtgttacatctcttaaaggtggcacgtccagagttgta
cattcctcccgtccagagttgttttgttcctccttcctcgttcctcccagtgggtttgtg
gtctcgctggcttcaggagtgaagctgcagacctttgcagtgagtgttacagctcttaaa
ggtggcacagacccaaagagtgagcagcagcaagatttattgcaaagagcaaaagaacaa
aacttcgaaaaagtggaaggggacctgagtgggttgctcaggtggcctgcttttattccc
ttatttggccccaatcacatcctgctgattggtctattttacagagagctgattggtcca
ttttacagagtgctgattggtccgtttttacacagagcactgattggtgcatttacaaag
ctttag

>gi568815594r:89629193_89935667|GENSCAN_predicted_peptide_4|57_aa
MGKGEEKARTFLTSFEDAGREPQATECKWALEVRSVKETDSPPEPPKRNATMLAPWF

>gi568815594r:89629193_89935667|GENSCAN_predicted_CDS_4|174_bp
atggggaaaggtgaagagaaagcaaggaccttcctcacaagctttgaagatgcaggtagg
gagccacaagccacggaatgcaaatgggctctagaagttagatcagtcaaagaaacagat
tctccaccagagcctccaaaaaggaatgcaaccatgctggcaccttggttttag

>gi568815594r:89629193_89935667|GENSCAN_predicted_peptide_5|82_aa
MVDSVRFELRDTQLVATKNGRIAWCRKHTPHTHVVSEMNRKYCVPEILSVVTLSSDKEAL
PQCDPEAADCLKIKEPHSFIAV

>gi568815594r:89629193_89935667|GENSCAN_predicted_CDS_5|249_bp
atggtagatagtgtccgatttgaattacgggacacccagttggtagccacaaagaatggg
agaattgcttggtgtagaaaacacaccccacacacacatgtggtgtcagaaatgaaccgg
aaatattgtgttccggaaatattgagtgttgtgaccctttccagtgataaagaagccctg
ccgcaatgtgaccccgaagctgcagattgtctgaagatcaaagagccacatagctttata
gctgtctaa

>gi568815594r:89629193_89935667|GENSCAN_predicted_peptide_6|186_aa
MTAQSYSRVQIDNRVYDLDVGSGHPNGVTAIKGSFVRQLKSYMIGQSACPLEEKGPGFFI
SPSLDLSAHMHLREHCSNCKRFCFDCGNWNNQGTNCKVTGKGSSRHDSSLSNFKAADFKR
ENQADESEQICSSAHFTIGFVLLWQSNATTELTGGGAQLLLCSLVSNSLTGYGPVLVMAL
GLGTPD

>gi568815594r:89629193_89935667|GENSCAN_predicted_CDS_6|561_bp
atgacagcacaatcctattctagagtccaaatcgacaatagggtttacgacctcgatgtt
ggatcaggtcatcctaatggtgtaactgctattaaaggttcgtttgttcgacaattgaag
tcctacatgatcggccagtctgcatgtccactagaagaaaagggacctgggttcttcatc
agcccatccttagatcttagtgcacatatgcacctaagagagcactgcagtaactgcaaa
cgcttctgttttgattgtggtaattggaacaatcagggcacaaactgcaaggtcactggc
aagggtagcagcaggcatgattcctcccttagtaattttaaagcagcagatttcaaaagg
gaaaaccaagcagatgaaagtgagcagatttgttcttcagcacatttcacaatagggttc
gtgctcctatggcaatctaatgccaccactgagctgacaggaggaggagctcagctcttg
ctgtgcagcctggtatcgaacagcctaacaggctatggaccagtactggtcatggccctg
gggttggggacccctgattga

>gi568815594r:89629193_89935667|GENSCAN_predicted_peptide_7|180_aa
MVTTRSMLAGGRGISSVIQEADSKMVLELQPSTRDLLQAIAMKVITHTSFHSSAITFVTK
VMVLSPPIAAAGLGHQDLGSTHHVPRTGPQVAKHMNEVQWKAFLRNPVKTKHTHTHTDIR
EAGRDVHYSTDKHPGRPSRKISSYFGTGDAHTQKAKRHSIFKEAHKKQCIQKWRELEEWT

>gi568815594r:89629193_89935667|GENSCAN_predicted_CDS_7|543_bp
atggtaacaacaagatccatgcttgctggaggtagaggcatcagttcagtcattcaggaa
gctgattccaagatggtgttagaattacaaccatccacaagagatttattgcaggcaata
gctatgaaagtcatcactcatacctctttccactcttctgccatcacttttgtcaccaaa
gtcatggtcctttccccgccgattgctgctgcaggtctagggcaccaagacttaggcagc
actcaccatgtgccaagaactggaccacaggtagcaaagcacatgaatgaagttcagtgg
aaggccttcctcaggaatccagtaaaaaccaaacatacacacacacacacggacatccgt
gaggcaggaagggatgtccactatagtacagacaagcatcctggaaggccatcaaggaaa
atctcctcttactttggcactggagatgcccatacgcagaaagcaaaaaggcacagcata
tttaaggaagctcataagaaacagtgcatccagaagtggcgagaattggaggaatggaca
tga

>gi568815594r:89629193_89935667|GENSCAN_predicted_peptide_8|135_aa
MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKAASYQGVRPKSFLLSDNT
KPHESPLRGRTRDKL

>gi568815594r:89629193_89935667|GENSCAN_predicted_CDS_8|408_bp
atggatgtattcatgaaaggactttcaaaggccaaggagggagttgtggctgctgctgag
aaaaccaaacagggtgtggcagaagcagcaggaaagacaaaagagggtgttctctatgta
ggctccaaaaccaaggagggagtggtgcatggtgtggcaacagtggctgagaagaccaaa
gagcaagtgacaaatgttggaggagcagtggtgacgggtgtgacagcagtagcccagaag
acagtggagggagcagggagcattgcagcagccactggctttgtcaaaaaggaccagttg
ggcaaggctgcatcctaccagggagtaagacccaagtccttcctgctttcagacaacacc
aagcctcatgagtccccactcagaggaaggaccagagacaaactctaa

>gi568815594r:89629193_89935667|GENSCAN_predicted_peptide_9|828_aa
MAEGKEEQVTSYVDGSRQGERAFAGKLPFLKQSDIMRLTLYHESSTRKTRPHDSTISHQW
VQDSGCSTSSMTRRTARHCLTQEVQGVREFPFIAKQSCDRRHLKNRVTPTQILRFSNGLS
KRHTRKLYPAPGSEGPMPTEPCSLLAQQSEIELQTDSGVDLQQTPTDLQLRILTVKRITN
KQKGHPHQNYKATVTKMARYYWQMRQMKIVKLDELDYRYFASTATDKETTPPSTKKTQCP
KPKFHNVQFQVQMYYLWSGGIGLNNSKHSWTIPEDGNSQKTMPSASVPPNKIQSLQILPT
TRVMSAEIATTPEARTSEDSLLKSTLPPSETSAPAEGVRNQTLTSTEKAEGVVKLQNLTL
PTNASIKFNPGAESVVLSNSTLKFLQSFARKSNEQATSLNTVGGTGGIGGVGGTGGVGNR
APRETYLSRGDSSSSQRTDYQKSNFETTRGKNWCAYVHTRLSPTVILDNQVTYVPAQEQQ
SLIHTNQAESHTAVGRGVAEQQQQQGCGDPEVMQKMTDQVNYQAMKLTLLQKKIDNISLT
VNDVRNTYSSLEGKVSEDKSREFQSLLKGLKSKSINVLIRDIVREQFKIFQNDMQETVAQ
LFKTVSSLSEDLESTRQIIQKVNESVVSIAAQQKFVLVQENRPTLTDIVELRNHIVNVRQ
EMTLTCEKPIKELEVKQTHLEGALEQEHSRSILYYESLNKTLSKLKEVHEQLLSTEQVSD
QKNAPAAESVSNNVTEYMSTLHENIKKQSLMMLQMFEDLHIQESKINNLTVSLEMEKESL
RGECEDMLSKCRNDFKFQLKDTEENLHVLNQTLAEVLFPMDNKMDKMX

>gi568815594r:89629193_89935667|GENSCAN_predicted_CDS_9|2484_bp
atggcagaaggcaaggaggagcaagtcacgtcttatgtggatggcagcaggcaaggggag
agagcttttgcagggaaactcccatttttaaaacaatcagatatcatgagacttactctc
tatcatgagagcagcacaagaaagacccgaccccatgattcaactatctcccaccagtgg
gtgcaggacagtgggtgcagcacatcgagcatgacccgaagaacagcgaggcattgcctc
acccaggaagtgcaaggggtgagggaattccctttcatagccaagcaaagctgtgacaga
cggcacctgaaaaatcgggtcactcccacccaaatactgcgcttttccaatggtcttagc
aagcggcacaccaggaaattatatcctgcgcctggctcagagggtcccatgcccacggag
ccttgctcattgctagcacagcagtctgagattgaactgcaaacagattctggagtggac
ctccagcaaactccaacagacctgcagctgaggatcctgactgtcaaaaggataactaac
aaacagaaaggacatccacaccaaaactacaaggctacagtaaccaaaatggcacggtat
tactggcagatgaggcaaatgaagattgtaaagttagatgaacttgattatcgatacttt
gccagtactgctacagacaaagagaccacacctccatctaccaaaaaaactcagtgtcct
aaaccaaagtttcataatgttcaattccaagttcaaatgtattatttatggagtgggggc
attgggcttaacaacagtaagcattcttggactatacctgaggatgggaactctcagaag
actatgccttctgcttcagttcctccaaataaaatacaaagtttgcaaatactgccaacc
actcgggtcatgtcggcggagatagctacaactccagaggcaagaacttctgaagacagt
cttcttaaatcaacactgcctccctcagaaacaagtgcacctgctgagggtgtgagaaat
caaactctcacatccacagagaaagcagaaggagtggtcaagttacagaatcttaccctc
ccaaccaacgctagcatcaagttcaatcctggagcagaatcagtggtcctttccaattct
acactgaaatttcttcagagctttgccagaaagtcaaatgaacaagcaacttctctaaac
acagttggaggcactggaggcattggaggcgttggaggcactggaggcgtgggaaatcga
gccccacgggaaacatacctcagccggggtgacagcagttccagccaaagaactgactac
caaaaatcaaatttcgaaacaactagaggaaagaattggtgtgcttatgtacataccagg
ttatctcccacagtgatattggacaaccaggtcacttatgtcccagcccaggaacagcaa
agtttgatacacaccaaccaggctgaaagtcatacagctgttggcagaggagtagctgag
cagcagcagcagcaaggctgtggtgacccagaagtgatgcaaaaaatgactgatcaggtg
aactaccaggcaatgaaactgactcttctgcagaagaagattgacaatatttctttgact
gtgaatgatgtaaggaacacttactcctccctagaaggaaaagtcagcgaagataaaagc
agagaatttcaatctcttctaaaaggtctaaaatccaaaagcattaatgtactgataaga
gacatagtaagagaacaatttaaaatttttcaaaatgacatgcaagagactgtagcacag
ctcttcaagactgtatcaagtctatcagaggacctcgaaagcaccaggcaaataattcaa
aaagttaatgaatctgtggtttcaatagcagcccagcaaaagtttgttttggtgcaagag
aatcggcccactttgactgatatagtggaactaaggaatcacattgtgaatgtaaggcaa
gaaatgactcttacatgtgagaagcctattaaagaactagaagtaaagcagactcattta
gaaggtgctctagaacaggaacactcaagaagcattctgtattatgaatccctcaataaa
actctttctaaattgaaggaagtacatgagcagcttttatcaactgaacaggtatcagac
cagaagaatgctccagctgctgagtcagttagcaataatgtcactgagtacatgtctact
ttacatgaaaatataaagaagcagagtttgatgatgctgcaaatgtttgaagatttgcac
attcaagaaagcaagattaacaatctcaccgtctctttggagatggagaaagagtctctc
agaggtgaatgtgaagacatgttatccaaatgcagaaatgattttaaatttcaacttaag
gacacagaagagaatttacatgtgttaaatcaaacattggctgaagttctctttccaatg
gacaataagatggacaaaatgann