Result of FASTA (omim) for pF1KB8162
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8162, 359 aa
  1>>>pF1KB8162 359 - 359 aa - 359 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1160+/-0.000503; mu= 20.9880+/- 0.032
 mean_var=227.5559+/-59.281, 0's: 0 Z-trim(113.6): 101  B-trim: 2691 in 2/48
 Lambda= 0.085022
 statistics sampled from 22949 (23070) to 22949 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.27), width:  16
 Scan time:  5.850

The best scores are:                                      opt bits E(85289)
NP_002887 (OMIM: 602571) RNA-binding protein 4 iso ( 364) 2134 275.2 1.6e-73
NP_001185773 (OMIM: 602571) RNA-binding protein 4  ( 173)  902 123.5 3.6e-28
NP_001185772 (OMIM: 602571) RNA-binding protein 4  ( 143)  896 122.6 5.5e-28
NP_006319 (OMIM: 612409) RNA-binding protein 14 is ( 669)  498 75.0 5.3e-13
NP_001185765 (OMIM: 612409) RNA-binding protein 14 ( 156)  437 66.4 5.1e-11
NP_001185766 (OMIM: 612409) RNA-binding protein 14 ( 119)  305 49.9 3.4e-06


>>NP_002887 (OMIM: 602571) RNA-binding protein 4 isoform  (364 aa)
 initn: 1922 init1: 1466 opt: 2134  Z-score: 1440.9  bits: 275.2 E(85289): 1.6e-73
Smith-Waterman score: 2134; 89.3% identity (97.0% similar) in 365 aa overlap (1-359:1-364)

               10        20        30        40        50        60
pF1KB8 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER
       :::::::::::::::.:::::::::::::::.::::::::::::::::::::::::::::
NP_002 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::.
NP_002 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS
              130       140       150       160       170       180

              190       200       210        220        230        
pF1KB8 GRVADFTEQYNEQYGAVRTPYTMGYGESMYYNDAYGALD-YYKRYRV-RSYEAVAAAAAA
       :::::.:::::::::::::::::.::.:.:::.:::::: :::: :. ::::::::::: 
NP_002 GRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAA-
              190       200       210       220       230          

      240       250       260       270       280       290        
pF1KB8 SAYNYAEQTMSHLPQVQSTTVTSHLNSTSVDPYDRHLLPNSGAAATSAAMAAAAAT----
       :.:::::::.:.:::::.:...:::.:::.:::::::::.::::::.:: :::::.    
NP_002 SVYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAA
     240       250       260       270       280       290         

          300       310       320       330       340       350    
pF1KB8 TSSYYGRDRSPLRRAAAMLPTVGEGYGYGPESELSQASAATRNSLYDMARYEREQYVDRA
       ..:::::::::::::.: .:::::::::: ::::::::::.:::::::::::::::.:::
NP_002 STSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRA
     300       310       320       330       340       350         

            
pF1KB8 RYSAF
       :::::
NP_002 RYSAF
     360    

>>NP_001185773 (OMIM: 602571) RNA-binding protein 4 isof  (173 aa)
 initn: 921 init1: 902 opt: 902  Z-score: 626.8  bits: 123.5 E(85289): 3.6e-28
Smith-Waterman score: 902; 98.6% identity (100.0% similar) in 139 aa overlap (1-139:1-139)

               10        20        30        40        50        60
pF1KB8 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER
       :::::::::::::::.:::::::::::::::.::::::::::::::::::::::::::::
NP_001 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT
       :::::::::::::::::::                                         
NP_001 AEDAVEAIRGLDNTEFQGKITPVTEGYCCCNKGHTYIFKNCNLILESRKSRRC       
              130       140       150       160       170          

>>NP_001185772 (OMIM: 602571) RNA-binding protein 4 isof  (143 aa)
 initn: 896 init1: 896 opt: 896  Z-score: 623.4  bits: 122.6 E(85289): 5.5e-28
Smith-Waterman score: 896; 98.6% identity (100.0% similar) in 138 aa overlap (1-138:1-138)

               10        20        30        40        50        60
pF1KB8 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER
       :::::::::::::::.:::::::::::::::.::::::::::::::::::::::::::::
NP_001 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT
       ::::::::::::::::::                                          
NP_001 AEDAVEAIRGLDNTEFQGGMCVG                                     
              130       140                                        

>>NP_006319 (OMIM: 612409) RNA-binding protein 14 isofor  (669 aa)
 initn: 480 init1: 326 opt: 498  Z-score: 354.3  bits: 75.0 E(85289): 5.3e-13
Smith-Waterman score: 510; 33.0% identity (60.1% similar) in 358 aa overlap (2-334:1-355)

               10         20        30        40        50         
pF1KB8 MVKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYK
        .:.:.::.   ..: .:. .::  :: :. : ..:...:::......:  ::. :: ..
NP_006  MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHE
                10        20        30        40        50         

      60         70        80        90       100       110        
pF1KB8 LH-GVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHM
       :. :  . :: :. .   . :. :::.: .::.::::. ::. : :::::.:::::::::
NP_006 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHM
      60        70        80        90       100       110         

      120       130       140       150       160       170        
pF1KB8 ERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVD
       :.  ::  ::  :.. : .:::..:.:::.  . .::.. :::  .  : :  .   :  
NP_006 EKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSG-DKTKKPGAGDTAFP-G
     120       130       140       150       160        170        

      180         190             200       210           220      
pF1KB8 RTGRVA--DFTEQYNEQYGAVR------TPYTMGYGESMYYND----AYGALDYYKRYRV
         :  :  :. . .... :.        ::  .:  .:    .    .: :    .    
NP_006 TGGFSATFDYQQAFGNSTGGFDGQARQPTPPFFGRDRSPLRRSPPRASYVAPLTAQPATY
       180       190       200       210       220       230       

        230       240       250       260          270        280  
pF1KB8 RSYEAVAAAAAASAYNYAEQTMSHLPQVQSTTVTSHLNSTSVD---PYDRHLL-PNSGAA
       :.  .:. .::  :   :   ...  : ... ..:.  . ::.   ::  .:  :.: .:
NP_006 RAQPSVSLGAAYRAQPSASLGVGYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSSQSA
       240       250       260       270       280       290       

                 290       300         310       320       330     
pF1KB8 ATSA-----AMAAAAATTSSYYGRDR--SPLRRAAAMLPTVGEGYGYGPESELSQASAAT
       :.:.     .   .:.. ::: :.    : :   .:.  ... .::  : :  .::... 
NP_006 AASSLGPYGGAQPSASALSSYGGQAAAASSLNSYGAQGSSLA-SYGNQPSSYGAQAASSY
       300       310       320       330        340       350      

         340       350                                             
pF1KB8 RNSLYDMARYEREQYVDRARYSAF                                    
                                                                   
NP_006 GVRAAASSYNTQGAASSLGSYGAQAASYGAQSAASSLAYGAQAASYNAQPSASYNAQSAP
        360       370       380       390       400       410      

>>NP_001185765 (OMIM: 612409) RNA-binding protein 14 iso  (156 aa)
 initn: 395 init1: 292 opt: 437  Z-score: 318.8  bits: 66.4 E(85289): 5.1e-11
Smith-Waterman score: 437; 45.9% identity (75.0% similar) in 148 aa overlap (2-147:1-148)

               10         20        30        40        50         
pF1KB8 MVKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYK
        .:.:.::.   ..: .:. .::  :: :. : ..:...:::......:  ::. :: ..
NP_001  MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHE
                10        20        30        40        50         

      60         70        80        90       100       110        
pF1KB8 LH-GVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHM
       :. :  . :: :. .   . :. :::.: .::.::::. ::. : :::::.:::::::::
NP_001 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHM
      60        70        80        90       100       110         

      120       130       140       150       160       170        
pF1KB8 ERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVD
       :.  ::  ::  :.. : .:::..:.:::                               
NP_001 EKEADAKAAIAQLNGKEVKGKRINVELSTKGMVPTGV                       
     120       130       140       150                             

>>NP_001185766 (OMIM: 612409) RNA-binding protein 14 iso  (119 aa)
 initn: 263 init1: 160 opt: 305  Z-score: 232.3  bits: 49.9 E(85289): 3.4e-06
Smith-Waterman score: 305; 42.0% identity (74.1% similar) in 112 aa overlap (2-111:1-112)

               10         20        30        40        50         
pF1KB8 MVKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYK
        .:.:.::.   ..: .:. .::  :: :. : ..:...:::......:  ::. :: ..
NP_001  MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHE
                10        20        30        40        50         

      60         70        80        90       100       110        
pF1KB8 LH-GVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHM
       :. :  . :: :. .   . :. :::.: .::.::::. ::. : :::::.::       
NP_001 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKGMVPTGV
      60        70        80        90       100       110         

      120       130       140       150       160       170        
pF1KB8 ERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVD




359 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:08:03 2016 done: Fri Nov  4 10:08:04 2016
 Total Scan time:  5.850 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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