GENSCAN 1.0	Date run:  4-Nov-116	Time: 10:07:54

Sequence gi568815588f:28577898_28782398 : 204501 bp : 42.48% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +   1348   1387   40                              -2.65
 1.01 Init +   3119   3221  103  1  1   54   97    31 0.621   1.05
 1.02 Intr +   5502   5608  107  1  2   89   92    51 0.797   4.61
 1.03 Intr +  17880  18144  265  2  1   68   91   237 0.767  18.16
 1.04 Intr +  24677  24793  117  0  0   67   82    35 0.543   0.32
 1.05 Intr +  30289  30534  246  2  0   60   94   205 0.995  14.81
 1.06 Intr +  33877  34025  149  2  2  107   95   102 0.999  11.83
 1.07 Intr +  36670  36788  119  0  2   37  100   144 0.996   8.84
 1.08 Intr +  38276  38465  190  2  1   57   91    90 0.827   4.87
 1.09 Intr +  39760  39887  128  0  2   78  115    74 0.911   7.66
 1.10 Intr +  41640  41703   64  0  1  101   46     1 0.347  -5.00
 1.11 Term +  43351  43467  117  0  0   76   47   107 0.409   2.96
 1.12 PlyA +  43905  43910    6                              -0.45

 2.03 PlyA -  44667  44662    6                               1.05
 2.02 Term -  46727  46494  234  2  0   79   49   166 0.911   7.14
 2.01 Init -  51045  50833  213  0  0   65   81   121 0.941   7.90
 2.00 Prom -  52048  52009   40                             -12.82

 3.00 Prom +  52449  52488   40                              -6.15
 3.01 Init +  52864  53058  195  0  0   88   99   120 0.988  12.08
 3.02 Intr +  58780  58863   84  0  0   97   53    75 0.059   4.00
 3.03 Intr +  80331  80456  126  2  0    0   62   179 0.058   6.46
 3.04 Intr +  86059  86295  237  0  0   44   68   168 0.522   7.29
 3.05 Term +  88479  88544   66  2  0   97   37    95 0.560   2.26
 3.06 PlyA +  90330  90335    6                               1.05

 4.00 Prom +  91597  91636   40                              -6.75
 4.01 Init + 100055 100471  417  1  0  101   65   245 0.225  18.04
 4.02 Intr + 103462 103648  187  0  1   85   96   119 0.232  10.74
 4.03 Intr + 104086 104375  290  2  2   98   77   226 0.048  18.54
 4.04 Intr + 123418 123516   99  0  0   39   92    53 0.011   0.19
 4.05 Intr + 127549 127740  192  0  0   57   23   178 0.561   6.97
 4.06 Intr + 131758 131841   84  0  0  101   73    58 0.710   4.70
 4.07 Intr + 132497 132658  162  1  0   62   84    54 0.505   1.65
 4.08 Intr + 132974 133079  106  1  1    2   99    99 0.391   1.27
 4.09 Intr + 135461 135530   70  0  1   79   86    20 0.396  -1.78
 4.10 Term + 138681 138759   79  0  1   35   44   178 0.695   4.36
 4.11 PlyA + 140941 140946    6                               1.05

 5.10 PlyA - 142822 142817    6                               1.05
 5.09 Term - 144639 144545   95  1  2   66   47   112 0.269   1.91
 5.08 Intr - 144883 144742  142  1  1   22   74   107 0.656   1.71
 5.07 Intr - 158250 158077  174  0  0   78   98    38 0.038   3.01
 5.06 Intr - 165687 165546  142  2  1   82   37   103 0.065   4.03
 5.05 Intr - 169023 168874  150  2  0   71   49    97 0.019   2.46
 5.04 Intr - 174405 174325   81  2  0   74   98    73 0.016   4.73
 5.03 Intr - 183542 183433  110  2  2   56  105    35 0.000   0.16
 5.02 Intr - 200274 200135  140  1  2   62   77    65 0.286   2.06
 5.01 Init - 203371 203191  181  1  1   45   57   128 0.162   4.79

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 104086 104504  419  2  2   98   49   284 0.912  19.95
S.002 Term + 174593 174778  186  1  0   78   42   189 0.843   9.81
S.003 Term + 186016 186303  288  0  0   41   45   195 0.817   4.89


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588f:28577898_28782398|GENSCAN_predicted_peptide_1|534_aa
MHLIPPATNCDTLVECCLPGKLTRDLVCTAFTGFGTSYSPQENSHNHSALHSSNSHSSNP
SNNPSKTSDANILSQTSRHNDRDYRLPRAETHSSSTPVQHPIKPVVHPTATPSTVPSSPF
TLQSDHQPKKSFDANGASTLSKLPTPTSSVPAQKTERKVLQQLSKHNRKVMIRSALITSI
ILDLLYIEKDLRYQKNIESTSGDKPVSHSCTTPSTSSASGLNPTSAPPTSASAVPVSPVP
QSPIPPLLQDPNLLRQLLPALQATLQLNNSNVDISKINEAQPSNQSPMSLTSDASSPRSY
VSPRISTPQTNTVPIKPLISTPPVSSQPKVSTPVVKQGPVSQSATQQPVTADKQQGHEPV
SPRSLQRSSSQRSPSPGPNHTSNSSNASNATVVPQNSSARSTCSLTPALAAHFSENLIKH
VQGWPADHAEKQASRLREEAHNMGTIHMSEICTELKNLRSLVRVCEIQATLREQRILFLR
QQIKELEKLKNQNSFMISASKTGSTKGLFFMLDINVNVTTFSDANINFEIALVL

>gi568815588f:28577898_28782398|GENSCAN_predicted_CDS_1|1605_bp
atgcacttaattcctccagcaacaaattgtgacacacttgtggaatgttgtctaccaggg
aagctcactagagatttagtgtgcacggcttttactggatttgggaccagttactctcca
caagaaaattcacacaaccacagtgctcttcatagttcaaattcacattcttctaatcca
agcaataacccaagcaaaacttcagatgcaaatattttgtctcaaacaagcagacacaat
gacagagactacagactgccaagagcagagactcacagtagttctacgccagtacagcac
cccatcaaaccagtggttcatccaactgctaccccaagcactgttccttctagtccattt
acgctacagtctgatcaccagccaaagaaatcatttgatgctaatggagcatctacttta
tcaaaactgcctacacccacatcttctgtccctgcacagaaaacagaaagaaaagtatta
cagcaactgtcaaaacacaacaggaaagtaatgattagaagtgcacttattaccagtatc
attttagatcttctgtatattgaaaaggatttgagataccagaaaaatatagaatctaca
tcaggagacaaacccgtatcacattcttgcacaactccttccacgtcttctgcctctgga
ctgaaccccacatctgcacctccaacatctgcttcagcggtccctgtttctcctgttcca
cagtcgccaatacctcccttacttcaggacccaaatcttcttagacaattgcttcctgct
ttgcaagccacgctgcagcttaataattctaatgtggacatatctaaaataaatgaagcc
cagccatctaatcagtctccgatgtctttaacatctgatgcgtcatccccaagatcatat
gtttctccaagaataagcacacctcaaactaacacagtccctatcaaacctttgatcagt
actcctcctgtttcatcacagccaaaggttagtactccagtagttaagcaaggaccagtg
tcacagtcagccacacagcagcctgtaactgctgacaagcagcaaggtcatgaacctgtc
tctcctcgaagtcttcagcgctcaagtagccagagaagtccatcacctggtcccaatcat
acttctaatagtagtaatgcatcaaatgcaacagttgtaccacagaattcttctgcccga
tccacgtgttcattaacgcctgcactagcagcacacttcagtgaaaatctcataaaacac
gttcaaggatggcctgcagatcatgcagagaagcaggcatcaagattacgcgaagaagcg
cataacatgggaactattcacatgtccgaaatttgtactgaattaaaaaatttaagatct
ttagtccgagtatgtgaaattcaagcaactttgcgagagcaaaggatactatttttgaga
caacaaattaaggaacttgaaaagctaaaaaatcagaattccttcatgataagtgcttcc
aaaactggcagcaccaagggcttattttttatgttagacatcaatgtcaatgttactaca
ttctcggatgctaacataaattttgaaattgctcttgtgctttaa

>gi568815588f:28577898_28782398|GENSCAN_predicted_peptide_2|148_aa
MDSGGQWITLLCLQPVTQSCSQHVGAVHLPDSAKEATVHPYPGSSANKVTRAEAEEVFER
TKPAVAQLWREKSEGGWLDVKASSKPQVKPVKPGDLVKPGQSPTPMPHPILALEAGSLPP
TSPSPQDCRIRSSISFLIGLFTPKTCSS

>gi568815588f:28577898_28782398|GENSCAN_predicted_CDS_2|447_bp
atggactctggaggccaatggataactctcctgtgcttgcagcctgtgacgcagtcctgc
tctcaacatgtgggtgctgtccacctccctgactctgcaaaagaagccactgtccaccca
tacccaggtagctctgcgaacaaggtgactagagcagaggcagaagaggttttcgagagg
acaaagccagcagtggctcagttgtggagagaaaagtcagaagggggctggttggatgtc
aaagcatcttctaaaccacaggtgaaacctgtgaaaccaggtgacctagtgaaaccaggc
caatctccaacccccatgcctcacccaatcctggctttagaagcagggtcacttcctcct
accagtccatctccccaggattgtcgcatcagaagcagcatctcatttctcattggctta
tttactcctaaaacgtgttcctcttag

>gi568815588f:28577898_28782398|GENSCAN_predicted_peptide_3|235_aa
MEAAGSICLPYSNHSEKPKALWLEGSTSHSLSSCKPTWLLYLHAMDRLRGEGHRAAAGGT
GLAVQACTDSGRLVLQVCMEQGFSIQACYWAVPNWRIPGASSSRPKVLKGWSPVGSISIT
WELTRPAGDAPETGQNDLASCINSKQQLLSSQLSAASLSPQEGEKDLRQDLSLPAGGWKR
KLWAPLRGHFILWKIKVIRDAKVPVLAEETVVTLLGIFGLEQLRKVRADTQVLTP

>gi568815588f:28577898_28782398|GENSCAN_predicted_CDS_3|708_bp
atggaagctgcaggaagcatctgcctgccctattctaaccactctgaaaaacccaaagcc
ttgtggctggagggatctacttcccattcactctcatcgtgtaagccgacttggcttctg
tacctccatgccatggaccggcttagaggagaaggacatagggctgctgcgggtggaaca
gggttagcagtgcaggcctgcacggactcagggcggcttgtgttgcaagtgtgcatggag
cagggtttctctatccaggcatgctactgggctgttccgaactggagaatacctggtgcc
tctagctctaggccaaaggttctcaaagggtggtccccagttggcagcatcagcatcacc
tgggaacttacaagacctgcaggagatgcaccagagactggacagaacgaccttgcttct
tgtatcaacagcaaacagcagctgctgtcttcccagctgagcgctgcttccctctcacca
caagagggcgagaaagacctgcgacaggacctctccctccctgcgggaggatggaagaga
aagctctgggctccgttaagagggcattttattctctggaaaataaaagtaataagagat
gccaaagttccagtgttggctgaagaaacagtggttaccctgttgggcatctttggtctt
gaacagctcaggaaagtccgagctgacactcaggttcttactccttag

>gi568815588f:28577898_28782398|GENSCAN_predicted_peptide_4|561_aa
MAVLLTKGGCRGRTGPGVPSSPRGFGAGCRGFVSGRRGSLLRRSRRSRQVAVFLEVAAVA
WRVDADSDLRAGADQRVLLALPAGSGAFAAQRGAGPESRPRRRRFRTLGARAAGRNRRSW
PVAAACPQRVCVSASGCISNSNSPLTHGCLDSLASTTDICQAKQARNHSGTTIPTLECCH
EDMCNYRGLHDVLSPPRGEASGQGNRYQHDGSRNLITKVQELTSSKELWFRAAVIAVPIA
GGLILVLLIMLALRMLRSENKRLQDQRQQMLSRLHYSFHGHHSKKGQVAKLDLECMVPAG
SETARGQQPQSWLIQAEQGLIEWNTNVLWMQFYNNQLGRKWQITAAVCTPFGPISLANQA
ARRPWACSSPGCVAHSGCGAVGDSEGASGLTPGGGDMMLEGTSGMIPGQNVDGSQPKRKI
QIIPGFLSSTSCHSESEQRSPCHYSGQGKLWIQIPAVRKVIRVLQGHSFAACHVKSRIQE
VQNENEKADLDGMLLEGKGRCSGQRWCPGPGTVQPLQNTILLLTSAATARQPVLEGFEGI
EGRWLFNDEDEEEPENAKEEE

>gi568815588f:28577898_28782398|GENSCAN_predicted_CDS_4|1686_bp
atggccgtgctgctcaccaaaggtgggtgccgggggcgcacggggcccggggtcccgtcc
tcgccgcggggctttggagccggctgcagaggctttgttagcggcaggcgaggctccctc
ctgcgccggagccgcaggtcgcgacaagttgctgtgttcttagaagtcgcggcggtggcc
tggcgcgtggatgcggactccgatctaagggcaggcgctgatcagagggtcctcctggct
ctgcctgcggggagcggcgcgtttgcagcccagcggggagcggggccggagtctcggcct
cgacgccgccgcttccgcaccctgggggctcgggcggccgggaggaatcgcagatcctgg
cctgtagctgccgcgtgccctcagcgtgtctgtgtgagtgcctcagggtgtatttctaac
tcaaattccccactcacccatggctgcctggactctcttgcaagcacgacagacatctgc
caagccaaacaggcccgaaaccactctggcaccaccatacccacattggaatgctgtcat
gaagacatgtgcaattacagagggctgcacgatgttctctctcctcccaggggtgaggcc
tcaggacaaggaaacaggtatcagcatgatggtagcagaaaccttatcaccaaggtgcag
gagctgacttcttccaaagagttgtggttccgggcagcggtcattgccgtgcccattgct
ggagggctgattttagtgttgcttattatgttggccctgaggatgcttcgaagtgaaaat
aagaggctgcaggatcagcggcaacagatgctctcccgtttgcactacagctttcacgga
caccattccaaaaaggggcaggttgcaaagttagacttggaatgcatggtgccggctggg
tcagagacagcgagaggccagcagccacagtcctggctgatccaggcagagcaaggactg
atagaatggaacacaaatgtgctgtggatgcagttttacaacaaccaactgggaaggaag
tggcagataacagcggcggtctgcaccccttttggccccatatccctggccaaccaggct
gctagacgaccgtgggcctgcagcagccctggctgtgtggcccactcaggttgtggggca
gttggagactctgagggagcatcaggactgactcctggtggcggggatatgatgctagaa
gggacctcagggatgattccaggccagaatgttgacggctcccaaccaaagagaaaaatt
cagattatacctggcttcttgtcctccaccagctgtcactcggaaagtgaacagagaagc
ccttgccactatagtggacaagggaaactgtggatacagattccagcagtgagaaaggtc
attagagttctccaagggcacagctttgcagcatgtcatgtcaaaagcaggatccaggaa
gttcagaatgaaaatgaaaaagcagatctagatggaatgcttctagaaggcaaaggaagg
tgcagtggacagaggtggtgtccaggccctggcactgtgcagcccctgcagaataccata
ttgctgctcacctctgcagccactgccagacagcctgtactggaaggctttgaaggcatt
gaaggaagatggctgtttaatgatgaagatgaagaagagcctgaaaatgctaaagaggaa
gaatga

>gi568815588f:28577898_28782398|GENSCAN_predicted_peptide_5|404_aa
MMMEAEVREQIFAAGFEDRGRNYEEAAFRSKKRLRNGCFPVMVNTECQLDWTEGCKVLFL
DPGPEAKFPCTSHSLATNVVCLSLVALRGKDEENSCSVQLIPSDDFKNPSYSSISQTSLF
CDRVLANEIQADTLKSTFRKSPKRRSQHLASKGTKLGENEFDELTEVGFRRNMDEVGNHH
SQQTNTGTENQTPHVLTHKCELTMRTHEHREGNITHWGLSRSLPDPQAAADCHHNRPLTS
TLMAKLPPANPSPPPLKPHLSQQLTSASCWYTDLLHIGQCTSYGHRHSWISYTLFPLGSE
LNCKHQESSVSPCCKFYLVQCLHECGAPPERGTSAEMNIDLTWLSLLQQGDAIPAAPRAT
CCWGAFTPGTGMGGISLPPEHPLSAAADGTRASRDQWTQSEVGT

>gi568815588f:28577898_28782398|GENSCAN_predicted_CDS_5|1215_bp
atgatgatggaagcagaagtcagagaacaaatctttgctgctggctttgaagacagagga
aggaactatgaggaggcagcctttagaagcaagaaaagactaagaaatggatgtttccct
gtgatggttaatactgagtgtcaacttgattggactgaaggatgcaaagtattgttcctg
gatccaggacccgaagccaagtttccctgcacatctcactccctggccacaaatgtggtc
tgtctcagccttgttgccttgagaggaaaagatgaggaaaattcctgttctgtccagctc
atcccctctgatgacttcaagaaccccagttattcaagcatttcacaaacatctttgttc
tgtgatcgagtgctggcaaatgaaatacaagcagatacgttgaaaagtaccttcaggaag
tctccaaaaagaagatcacaacacctcgccagcaagggaacaaaactgggggagaatgag
tttgacgaattgacagaagtaggcttcagaagaaacatggatgaagttggaaaccatcat
tctcagcaaactaacacaggaacagaaaaccaaacaccgcatgttctcactcataagtgt
gagttgacaatgagaacacatgaacacagggagggtaacatcacacactggggcctgtcg
aggtctctcccagatcctcaggcagctgctgactgccaccacaacagacccctcacctcc
actctgatggcaaaactgccccctgccaatccctctccaccccccttaaaacctcaccta
tcgcagcagctgacatcagccagttgttggtatactgacttgctgcacatcgggcaatgt
acttcttatggtcataggcattcttggatcagctacacccttttccctcttggaagtgaa
cttaactgcaagcaccaagagtcctctgtttctccatgctgtaagttttacctggtccag
tgcctacatgagtgtggggcccccccagagagaggcacctctgcggaaatgaacattgac
ctcacgtggctgagtcttctgcagcaaggggatgccatccctgcggctcctagagccacg
tgttgctggggcgcatttacacctggcaccgggatgggcgggatttcactcccgcccgag
caccctctttcggctgctgctgatgggacgcgtgcatcaagagatcagtggacccagagc
gaggtggggacgtga