GENSCAN 1.0	Date run:  4-Nov-116	Time: 10:07:21

Sequence gi568815595r:149866492_150070856 : 204365 bp : 38.06% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   5538   5663  126  2  0   70   86    54 0.329   3.36
 1.02 Intr +  28982  29069   88  1  1  141   98   106 0.984  15.52
 1.03 Intr +  35581  35671   91  2  1   43  110    56 0.761   1.43
 1.04 Intr +  45487  45592  106  1  1  115   78   -18 0.597  -0.80
 1.05 Intr +  47069  47179  111  1  0  118   68    -1 0.414   0.56
 1.06 Intr +  54643  54736   94  0  1  118  115    31 0.846   7.42
 1.07 Term +  58550  58659  110  0  2   81   50    71 0.596   0.29
 1.08 PlyA +  61561  61566    6                               1.05

 2.03 PlyA -  62004  61999    6                               1.05
 2.02 Term -  70871  70723  149  0  2   58   39   109 0.221   0.08
 2.01 Init -  73288  72847  442  1  1   82   32   442 0.165  34.27
 2.00 Prom -  77811  77772   40                              -3.65

 3.00 Prom +  78494  78533   40                             -11.04
 3.01 Sngl +  79469  79762  294  1  0   88   54   297 0.911  21.75
 3.02 PlyA +  82112  82117    6                              -1.75

 4.00 Prom +  82124  82163   40                              -3.45
 4.01 Init +  92996  93038   43  1  1    9  115     3 0.410  -4.24
 4.02 Intr +  93565  93645   81  2  0   86   60    68 0.845   2.49
 4.03 Term +  94249  94613  365  2  2   66   38   445 0.971  31.04
 4.04 PlyA +  95380  95385    6                               1.05

 5.06 PlyA -  96871  96866    6                               1.05
 5.05 Term -  99773  99676   98  0  2   81   47    82 0.710   0.55
 5.04 Intr - 102059 101867  193  2  1   33  105   195 0.964  13.84
 5.03 Intr - 104520 104234  287  1  2   99   89   155 0.351  12.84
 5.02 Intr - 105095 104867  229  2  1    7   41   139 0.112  -2.38
 5.01 Init - 105268 105116  153  1  0   75   -1   164 0.239   6.23
 5.00 Prom - 108697 108658   40                              -6.55

 6.02 PlyA - 108895 108890    6                               1.05
 6.01 Sngl - 116766 115687 1080  0  0  101   33  1171 0.859 109.73
 6.00 Prom - 117109 117070   40                             -14.06

 7.00 Prom + 117743 117782   40                              -6.15
 7.01 Sngl + 117995 118306  312  1  0    3   38   326 0.488  14.78
 7.02 PlyA + 118495 118500    6                               1.05

 8.00 Prom + 122928 122967   40                              -5.25
 8.01 Init + 126066 126115   50  2  2   54   89    46 0.329   1.77
 8.02 Term + 133837 134068  232  1  1   49   49   245 0.477  11.66
 8.03 PlyA + 134531 134536    6                               1.05

 9.00 Prom + 143709 143748   40                              -4.25
 9.01 Init + 150241 150442  202  0  1   93   82   115 0.171  10.49
 9.02 Term + 157160 157512  353  0  2   -3   38   284 0.031   7.96
 9.03 PlyA + 158590 158595    6                               1.05

10.00 Prom + 162178 162217   40                              -4.15
10.01 Init + 163120 163221  102  0  0   78   83   115 0.977  10.29
10.02 Intr + 165645 165724   80  2  2   92   45    97 0.706   3.23
10.03 Intr + 168958 169133  176  1  2  100   11   163 0.686   8.46
10.04 Intr + 172452 172570  119  1  2  109   30    76 0.194   3.16
10.05 Intr + 173296 173379   84  0  0   84   86    53 0.513   3.80
10.06 Intr + 175019 175079   61  1  1   79   59    50 0.172  -1.41
10.07 Intr + 180306 180450  145  1  1   74   90    48 0.351   2.02
10.08 Term + 184410 184983  574  0  1  -55   49   404 0.273  15.14
10.09 PlyA + 185431 185436    6                               1.05

11.05 PlyA - 186696 186691    6                               1.05
11.04 Term - 187171 187007  165  1  0   56   36   124 0.268   0.93
11.03 Intr - 190746 190594  153  0  0   41   92   148 0.952   9.85
11.02 Intr - 200723 200562  162  2  0   56   63    75 0.011   1.05
11.01 Intr - 203943 203862   82  2  1  114   61    40 0.616   2.62

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl + 157180 157512  333  0  0   78   38   261 0.913  15.87


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595r:149866492_150070856|GENSCAN_predicted_peptide_1|241_aa
GFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAIVHNVD
SDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHLILVPEFSLPLEYYLI
PFLIIVGICLILIVIFMDQIQDTTLYFIILSSLWSMTILLFLFFMALIILSTSQITKFVQ
DRHRARRNRLRKDQLKKLPVHKFKKGRKSPTEGEDRGGGIGAFKNRGIKYYYSRRVGGGM
D

>gi568815595r:149866492_150070856|GENSCAN_predicted_CDS_1|726_bp
ggttttttgattaactcaaaaccagagaatgcctgtgaacccatagtgcctccaccagta
aaagacaattcatctggcactttcatcgtgttaattagaagacttgattgtaattttgat
ataaaggttttaaatgcacagagagcaggatacaaggcagccatagttcacaatgttgat
tctgatgacctcattagcatgggatccaacgacattgaggtactaaagaaaattgacatt
ccatctgtctttattggtgaatcatcagctaattctctgaaagatgaattcacatatgaa
aaagggggccaccttatcttagttccagaatttagtcttcctttggaatactacctaatt
cccttccttatcatagtgggcatctgtctcatcttgatagtcattttcatggatcaaatc
caggataccacattgtatttcattatcctgtcttccctctggtctatgacaattttgctg
ttcttgtttttcatggccttgataattttgagtactagccagatcacaaaatttgtccag
gatagacatagagctagaagaaacagacttcgtaaagatcaacttaagaaacttcctgta
cataaattcaagaaaggtaggaaatcaccaactgagggtgaggacagaggaggaggtatt
ggagcttttaagaacagaggtataaaatactattattccaggagagtaggaggaggaatg
gactag

>gi568815595r:149866492_150070856|GENSCAN_predicted_peptide_2|196_aa
MDMSPLRPQNYLFSCQQKADKDYHFKVNNDENEHQLSLRTVISGTGAKDKLHIVETEAMN
YEGSPIKVTLATLKMSVQPMVSGGLEITPLVILRLKCASEPVHISGQHLVAVEEDAESED
EEEEYVKLKFIWKAICPRRWQKSSTEKIIRHWIKKSPKTYGSYPGETETKVDSQFPYRLG
LLCRKAVPASTHRKHC

>gi568815595r:149866492_150070856|GENSCAN_predicted_CDS_2|591_bp
atggacatgagccctctgaggccccagaactatcttttcagttgtcaacaaaaggccgac
aaagattatcactttaaggtgaataatgatgaaaatgagcaccagttatctttaagaacg
gtgatttcagggactggagcaaaggataaattgcatattgttgaaacagaggcaatgaat
tatgaaggcagtccgattaaagtaacactggcaactttgaaaatgtctgtacagccaatg
gtttctgggggccttgaaataacaccactggtgatcttacggttgaagtgtgcttcagag
ccagtgcatattagtggacagcacttagtagctgtggaggaagatgcagagtcagaagat
gaagaagaggagtatgtgaaactcaagtttatctggaaagcgatctgcccccggaggtgg
cagaaaagttccacagaaaaaattattaggcactggataaaaaagtctcccaagacttac
ggttcctatcctggagaaactgagactaaggtagacagccagtttccctaccgtctaggg
ttactatgcaggaaagctgttcctgcctcaacccacaggaagcattgctag

>gi568815595r:149866492_150070856|GENSCAN_predicted_peptide_3|97_aa
MGKKQSRKAENSKNQSASPPPKECSSSPATEQSWMENDFDKLREEGFRRSNFSELKEEVR
THPKESKNLEKRLDKWLTRITSVAKSLNDLMELKTMA

>gi568815595r:149866492_150070856|GENSCAN_predicted_CDS_3|294_bp
atggggaaaaaacagagcagaaaagctgaaaattctaaaaatcagagcgcctctccccct
ccaaaggaatgcagctcctcaccagcaacggaacaaagctggatggagaatgactttgac
aagttgagagaagaaggcttcagacgatcaaatttctccgagctaaaggaggaagtgcga
acccatcccaaagaatctaaaaaccttgagaaaagattagacaaatggctaactagaata
accagtgtagcaaagtccttaaatgacctgatggagctgaaaaccatggcatga

>gi568815595r:149866492_150070856|GENSCAN_predicted_peptide_4|162_aa
MCLALCSFHPYNLQGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP
VCKQKVVPSQGDSDSDTDSSQEENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTESS
DYEEDDNEDTDSSDAENEINEHDVVVQLQPNGERDYNIANTV

>gi568815595r:149866492_150070856|GENSCAN_predicted_CDS_4|489_bp
atgtgcctggccctttgctcatttcatccttataacctgcaaggagatgagtatgatgta
tgtgccatttgtttggatgagtatgaagatggagacaaactcagaatccttccctgttcc
catgcttatcactgcaagtgtgtagacccttggctaactaaaaccaaaaaaacctgtcca
gtgtgcaagcaaaaagttgttccttctcaaggcgattcagactctgacacagacagtagt
caagaagaaaatgaagtgacagaacatacccctttactgagacctttagcttctgtcagt
gcccagtcatttggggctttatcggaatcccgctcacatcagaacatgacagaatcttca
gactatgaggaagacgacaatgaagatactgacagtagtgatgcagaaaatgaaattaat
gaacatgatgtcgtggtccagttgcagcctaatggtgaacgggattacaacatagcaaat
actgtttga

>gi568815595r:149866492_150070856|GENSCAN_predicted_peptide_5|319_aa
MKDRRSSARFLSATDACSDFRLPARARGSAFMDEAQEGSRKDGALRDSEISLPLPPAAPT
TKRRKRSASRHQDNSVTRHRGSRFRIPGSEHRRKAHRGPAAGLQGVRAAAVPGVPRATRG
PPSPPARAPRGGGRSVPAQSRLLPAPAPPPPAPPPPATAAAAAAPAAPRRPRCSAKGSKM
AGWQSYVDNLMCDGCCQEAAIVGYCDAKYVWAATAGGVFQSITPIEIDMIVGKDREGFFT
NGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRALVIVMGKEGVHG
GTLNKKAYELALYLRRSDV

>gi568815595r:149866492_150070856|GENSCAN_predicted_CDS_5|960_bp
atgaaagatcggcgaagctcagcaaggttcctgagcgccacggacgcctgctctgatttc
aggttgccggcgcgcgcccgcgggtctgcctttatggacgaggcgcaagagggatccagg
aaagacggtgcccttagagactcggagattagcctgcccctgccaccagccgcccccaca
acaaaaaggaggaaacgctccgcatcccgtcaccaggacaactctgtaacccgacaccga
ggctcaagattccgcatcccgggcagcgaacacaggagaaaagcacatcgcggcccggcc
gcggggctccaaggcgtccgtgccgccgctgttcctggggtgccgagagcgacgcggggt
ccaccctctccgccggcccgagctcctcggggaggggggcggtcggtgcctgcgcagagc
cgcctcctccccgcccccgccccgcctccccccgcgccgccgccgcccgctaccgccgcc
gccgccgctgcgcctgctgctcctcgccgtccgcgctgcagtgcgaagggctcgaagatg
gccggttggcagagctacgtggataacctgatgtgcgatggctgctgccaggaggccgcc
attgtcggctactgcgacgccaaatacgtctgggcagccacggccgggggcgtctttcag
agcattacgccaatagaaatagatatgattgtaggaaaagaccgggaaggtttctttacc
aacggtttgactcttggcgcgaagaaatgctcagtgatcagagatagtctatacgtcgat
ggtgactgcacaatggacatccggacaaagagtcaaggtggggagccaacatacaatgtg
gctgtcggcagagctggtagagcattggttatagtcatgggaaaggaaggtgtccacgga
ggcacacttaacaagaaagcatatgaactcgctttatacctgaggaggtctgatgtgtaa

>gi568815595r:149866492_150070856|GENSCAN_predicted_peptide_6|359_aa
MPKRGKRLKFRAHDACSGRVTVADYADSDLAVVRSGRVKKAVANAVRQEVKSLCGLEASQ
VPAEEALSGAGEPYDIIDSSDEMDAQEENIHERTVSRKKKSKRHKEELDGAGGEEYPMDI
WLLLASYIRPEDIVNFSLICKNAWTVTCTAAFWTRLYRRHYTLDASLPLRLRPESMEKLH
CLRACVIRSLYHMYEPFAARISKNPAIPESTPSTLKNSKCLLFWCRKIVGNRQEPMWEFN
FKFKKQSPRLKSKCTGGLQPPVQYEDVHTNPDQDCCLLQVTTLNFIFIPIVMGMIFTLFT
INVSTDMRHHRVRLVFQDSPVHGGRKLRSEQGVQVILDPVHSVRLFDWWHPQYPFSLRA

>gi568815595r:149866492_150070856|GENSCAN_predicted_CDS_6|1080_bp
atgcccaagagaggaaagcgactcaagttccgggcccacgacgcctgctccggccgagtg
accgtggcggattacgccgactcggatctggcggtcgtgaggtctggacgagtcaagaaa
gccgtagccaacgctgttcggcaggaagtaaaatctctttgtggcttggaagcctctcag
gttcctgcagaggaagctctttctggggctggtgagccctatgacatcatcgacagcagt
gatgagatggatgcccaggaggaaaacatccatgagagaactgtctccagaaaaaagaaa
agcaagagacacaaagaagaactggacggggctggaggagaagagtatcccatggatatt
tggctattgctggcctcctatatccgtcctgaggacattgtgaatttttccctgatttgt
aagaatgcctggactgtcacttgcactgctgccttttggaccaggttgtaccgaaggcac
tacacgctggatgcttccctgcctttgcgtctgcgaccagagtcaatggagaagctgcac
tgtctccgggcttgtgtgatccgatctctgtaccatatgtatgagccatttgctgctcga
atctccaagaatccagccattccagaaagcacccccagcacattaaagaattccaaatgc
ttacttttctggtgcagaaagattgttgggaacagacaggaaccaatgtgggaattcaac
ttcaagttcaaaaaacagtcccctaggttaaagagcaagtgtacaggaggattgcagcct
cccgttcagtacgaagatgttcataccaatccagaccaggactgctgcctactgcaggtc
accaccctcaatttcatctttattccgattgtcatgggaatgatatttactctgtttact
atcaatgtgagcacggacatgcggcatcatcgagtgagactggtgttccaagattcccct
gtccatggtggtcggaaactgcgcagtgaacagggtgtgcaagtcatcctggacccagtg
cacagcgttcggctctttgactggtggcatcctcagtacccattctccctgagagcgtag

>gi568815595r:149866492_150070856|GENSCAN_predicted_peptide_7|103_aa
MCLGGDFTCHNGTGGKSIYAEKFDDESVILKYTGSGILSMANAVLNTNGSHFFICTAKTE
WLVGKHVVFGKVKAGTNKVEAMECFGSRNGKTSKKIIADCGKR

>gi568815595r:149866492_150070856|GENSCAN_predicted_CDS_7|312_bp
atgtgtctgggtggtgatttcacatgccataatggcactggtggaaagtccatctatgcg
gagaaatttgatgatgagagcgtcatcctgaagtatacaggttctggcatcttgtccatg
gcaaatgctgtactcaacacaaatggttcccattttttcatctgcactgcaaagactgag
tggttggtaggcaagcatgtggtcttcggcaaggtaaaagcaggcactaataaggtggaa
gccatggaatgctttgggtccaggaatggcaagaccagcaagaagatcattgctgactgt
ggaaaacgctaa

>gi568815595r:149866492_150070856|GENSCAN_predicted_peptide_8|93_aa
MTGSVGSLQRLLNVGKEEEEALVTLEEEAEATEVVNRVMETRAVAMAGLAPMTAITMEEA
EAALMLAVEAILEVAEATMILAITTVSLQILNP

>gi568815595r:149866492_150070856|GENSCAN_predicted_CDS_8|282_bp
atgacaggatcagttgggagtctgcagaggctcctcaatgtggggaaagaggaggaggaa
gccctggttactctggaggaggaagcagaggctacagaagtggtgaacagggttatggaa
accagggcagtggctatggcaggattggcacctatgactgctataacaatggaggaggca
gaggcagcattaatgctagcagtggaagcaattttggaggtggcagaagctacaatgatt
ttggcaattacaactgtcagtcttcaaattttgaatccatga

>gi568815595r:149866492_150070856|GENSCAN_predicted_peptide_9|184_aa
MGSRTISPKMVFKLGSWLRSSGACLLSDESDREVIVKGMGSRAQVDGESLETLHPEKRKG
GEFYIDADHTSSPAMDPNQDRISELPKKEFRIKLIQEAPEKDKIQLKEMKNMIQDMKGKF
FSETDSINKKQSQLMQIKDTFREMQSALESLRNTIEQAEETTPELGDKAFELTQSIKDKE
KGIF

>gi568815595r:149866492_150070856|GENSCAN_predicted_CDS_9|555_bp
atgggttccaggaccatcagcccaaagatggtattcaagctgggatcctggttgagatca
tctggagcatgtttgctttctgatgaaagtgatagagaagtcattgttaaggggatggga
tccagagctcaagtggacggggaatctctggagacacttcatccagagaaaagaaaaggt
ggagaattttacatagatgctgatcataccagctcaccagcaatggatccaaaccaagac
agaatctctgaactgccaaaaaaagaattcagaattaagctaatacaggaggcaccagag
aaagataaaatccaacttaaagaaatgaaaaacatgatacaggatatgaaaggaaaattc
ttcagtgaaacagatagcataaataaaaaacaatcgcaacttatgcaaatcaaggacaca
tttagagaaatgcaaagtgcactggaaagtctccgcaatacaatcgaacaagcagaagaa
acaactccagagcttggagacaaggcttttgaattaacacaatccatcaaagacaaagag
aaaggaattttttaa

>gi568815595r:149866492_150070856|GENSCAN_predicted_peptide_10|446_aa
MKFTRVIHTGNINLGVISVQMVFKAKRLAEITKGEGRIEVAADPYGFAGGNTQLIWMHIK
MVVVDLAMLCGRPQGIGVSSFVDKKQFRENTGPPVGRIYLKTKGWPSSGDLMAAALRVSS
YQMFAQECNLCNFAAASDCRPPLHLHEVTTKWPMGNLQRVSDFVKLHANLQTFLSGGDAN
DFCLREKALSKLQHKEEEPDLAQPSCQRLIVEICLSIKKQKQPAQQLEERDCPLKIQASQ
KNGSIFFLNSYFLNHRRSRSKTGGKKFRKEKNSREDKRERTATEEKQEEIKKRLKEPEEP
KVLTPEEQLADKLGLNKLQEESDLELAKETFGVNSTVYGIDAMNPSSRDDFTEFGKLLKD
KITQNEKSLYDVFFFLEILVRDVCISLEIDNLKKITNSLTVLCRKNRSKKNQKEEERCGS
WRGIKATMKDDLADYGGYDGGICTRL

>gi568815595r:149866492_150070856|GENSCAN_predicted_CDS_10|1341_bp
atgaagtttacgagagttattcacactggaaatataaatttgggtgtcatcagcgtacag
atggtgtttaaagccaagagacttgcagagatcactaagggagagggaagaattgaggtt
gctgcagacccatatggattcgctggtggtaacactcagttgatttggatgcacattaaa
atggtagtggtagaccttgcaatgctttgtggccgtccccaggggataggggtaagctca
tttgttgacaagaaacaatttagagaaaacactgggccacctgtgggcagaatctattta
aaaaccaaaggctggcccagcagtggagatctcatggctgctgctctacgcgtgagctcc
tatcagatgtttgcacaggagtgtaacctttgtaacttcgctgcagcctctgattgcagg
ccgccacttcatttacatgaggtgaccaccaagtggccaatgggaaacctgcagagggtc
tcagactttgtgaaattacatgctaacttgcagacatttttgtctggtggagatgcaaat
gatttctgtctgagagaaaaggctctttctaagctgcagcacaaggaagaggaacccgac
ttggcccaaccatcatgccaaaggttaatagtggaaatatgtttatccatcaagaaacaa
aaacagcctgcccaacaactggaagagagggattgtcctctcaagattcaggctagccaa
aagaatggaagtatctttttcttaaacagctatttcctcaaccacagaagaagcagaagt
aaaaccggaggtaaaaagttcagaaaagaaaaaaacagcagagaagataaaagagaaaga
acggcaacagaagaaaagcaagaagaaattaaaaagaggttaaaagaacctgaagaacct
aaagtgctaacaccagaagaacaattagcagataaactggggctaaataaattacaggaa
gagtcagacctcgaattagcaaaggaaacttttggtgttaatagtacagtttatggaata
gatgctatgaacccatcttcaagagatgattttacagagtttggaaagttactaaaagat
aaaattacacaaaatgaaaagtcactatatgatgtctttttttttttggaaatcttagtt
cgagatgtgtgtatttcattggaaattgataacttgaaaaagattaccaattcactgact
gtactttgccgtaaaaacagaagcaagaaaaaccaaaaagaagaagaaaggtgtggttcc
tggagagggataaaagccaccatgaaagatgatctggcagattatggtggttatgatgga
ggtatatgtacaagactatga

>gi568815595r:149866492_150070856|GENSCAN_predicted_peptide_11|187_aa
XSPLSNRKLEGKRLNAAHTSRLPGTQHRDNWEPWSVLGTSKDQTRCELMQLSSSISKSES
NGKTKMAMGEQKECQPLPRQGRESPEQKSTQGDNILTIYLLNIFTGLALPCVQFVAGAAA
SKKKPPIQEDCAQYSRSTYTVPDIILEAENTAENKTGKAPAILKVTCEWHENNREIIVNK
DDNFRYP

>gi568815595r:149866492_150070856|GENSCAN_predicted_CDS_11|564_bp
nngtccccattatccaataggaagttggagggcaaaagactcaatgcagcccataccagt
cggcttcctgggacacagcacagggataactgggagccatggagcgtcttaggtacgagt
aaagaccagaccagatgtgaactgatgcagctctctagcagcatcagtaagtcagaaagc
aatggaaaaaccaagatggcaatgggggagcaaaaggaatgccagcctctgccaaggcag
ggcagagaaagccctgaacaaaaatcaacccaaggtgacaacattctcaccatttacctt
ctgaacatctttactggccttgcactgccctgtgttcagtttgtggcaggggctgctgct
tccaaaaagaagcccccaatccaggaggactgcgctcagtattcacggagcacctacact
gtaccagacatcattctagaagcagaaaatacagcagagaacaagacaggtaaagcccca
gctatcctgaaggttacctgtgaatggcatgaaaataatagagaaataatagttaataaa
gatgataatttcagatatccataa