GENSCAN 1.0	Date run:  4-Nov-116	Time: 10:04:55

Sequence gi568815578r:17842360_18068425 : 226066 bp : 46.46% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   6525   6593   69  2  0   70   96    54 0.210   3.45
 1.02 Intr +  17705  17864  160  1  1  116  -12   134 0.017   5.76
 1.03 Intr +  27402  27523  122  1  2  102  100     0 0.110   2.81
 1.04 Intr +  27805  28039  235  0  1   91   98    55 0.249   4.06
 1.05 Intr +  43743  44015  273  1  0   76   84   158 0.513  11.71
 1.06 Term +  52841  53172  332  0  2   93   41    98 0.446   0.42
 1.07 PlyA +  54721  54726    6                               1.05

 2.00 Prom +  62391  62430   40                              -5.56
 2.01 Init +  69683  69774   92  1  2   64   77    76 0.422   4.06
 2.02 Intr +  86573  86656   84  2  0   79   93    48 0.064   3.34
 2.03 Intr +  96860  96956   97  2  1   82   91    76 0.463   7.31
 2.04 Intr +  97681  97831  151  0  1   69  103    14 0.372   0.74
 2.05 Term + 101136 101263  128  1  2   72   42    73 0.371  -0.46
 2.06 PlyA + 101713 101718    6                               1.05

 3.12 PlyA - 102198 102193    6                              -0.45
 3.11 Term - 105286 105122  165  1  0   77   53   181 0.967  11.42
 3.10 Intr - 106617 106531   87  0  0   89   97   127 0.999  13.87
 3.09 Intr - 106744 106705   40  0  1   75   86     6 0.927  -2.67
 3.08 Intr - 107848 107773   76  2  1   92  106    55 0.987   6.27
 3.07 Intr - 108037 107932  106  1  1  109   33    68 0.984   3.19
 3.06 Intr - 109236 109141   96  0  0   87  115    48 0.994   7.61
 3.05 Intr - 110351 110228  124  1  1   72   67    55 0.993   2.39
 3.04 Intr - 111758 111637  122  2  2   69   94   221 0.998  20.09
 3.03 Intr - 113116 113006  111  1  0  113   68    51 0.985   6.18
 3.02 Intr - 114678 114574  105  0  0   19  115   110 0.963   7.21
 3.01 Init - 120485 120429   57  2  0   65  111   -37 0.303  -2.11
 3.00 Prom - 122068 122029   40                              -7.06

 4.00 Prom + 125702 125741   40                              -6.26
 4.01 Init + 125910 126581  672  2  0   73   63   236 0.608  14.79
 4.02 Intr + 127615 127771  157  0  1    8  100   124 0.596   5.18
 4.03 Intr + 133325 133544  220  0  1  131   89   107 0.739  12.46
 4.04 Intr + 145807 145939  133  1  1   69   71    91 0.972   6.15
 4.05 Term + 147580 147750  171  0  0   73   50   188 0.999  11.33
 4.06 PlyA + 148303 148308    6                               1.05

 5.00 Prom + 148334 148373   40                              -6.26
 5.01 Init + 169597 169850  254  0  2   67   21   509 0.727  38.91
 5.02 Term + 171589 171778  190  1  1   96   51    90 0.933   3.02
 5.03 PlyA + 172626 172631    6                               1.05

 6.06 PlyA - 176042 176037    6                               1.05
 6.05 Term - 182593 182277  317  2  2  101   55   490 0.616  42.10
 6.04 Intr - 199364 199175  190  2  1  114   99   325 0.491  35.36
 6.03 Intr - 200769 200677   93  0  0   62   66    48 0.235   0.16
 6.02 Intr - 214518 214298  221  1  2   68   79   411 0.152  36.22
 6.01 Init - 215275 215176  100  1  1  104   99   121 0.977  15.24

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr + 155115 155239  125  0  2   92   90    70 0.822   7.83


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578r:17842360_18068425|GENSCAN_predicted_peptide_1|396_aa
MVSNRKGWQVLCLQVRGQGHMNQAGPSVSLVGAWGCLRDCAFADVKTAALLQNAENASNS
SREATICHKAENENPFSTSSHWEKTTRPVCQKALHPTPDHPSPACGHTRVWDPRLPKLRT
VKGSQKQGFNFANRSSEKCASQLPTASHVGKTYLGRGVRCQGGWETARKPNAPREALFPI
SWWPFPPTRYHNQIWGNSTHSELFQTPDIQVNKGMEQACVGFESIASPTDIPSSNLLDDV
QARERTNSSPKENWRAAGRGKMHRKATECQTAIPRRHALTHKGHTIWPQASSQLDTSHRT
ALPWESWNPLLVGATTQVEECPQHRDCPLGQLALLPDKGGSFAAPRLWSLRAGLQPNADT
PLMPTAWPPYPVALRPQDAFFPRSSLPTPTWKASLV

>gi568815578r:17842360_18068425|GENSCAN_predicted_CDS_1|1191_bp
atggtctcaaacaggaagggatggcaggtgctatgcctgcaggtgcggggacagggtcac
atgaatcaggctggaccatctgtatccctggttggagcctggggctgcctacgtgactgc
gcttttgcagatgtcaaaacagcagctctcctgcaaaacgccgagaatgcttccaattcc
tccagggaagctacaatttgccataaagctgaaaatgaaaatccttttagcacctcttcc
cactgggagaagaccacgcgacctgtctgccagaaagccctccaccccaccccagaccac
cccagtcctgcctgtggccacacccgtgtgtgggaccctcgtctccccaagctgcgaact
gtgaagggttctcaaaagcagggtttcaattttgcaaacagatcttcagaaaagtgtgcc
tcccagcttcccacggccagccacgtcggcaaaacatacctcgggagaggagtccgctgc
caaggaggctgggaaacagcccggaagcccaatgcgcctcgggaggctctgtttccaatc
agctggtggccgttccccccaactcgttaccataaccagatttggggaaattctactcac
tcagagctgttccagaccccagacattcaggtaaataaaggtatggagcaagcttgtgtt
ggctttgagtcaattgcatctcccacagacatcccctccagcaacctccttgatgacgtt
caagccagggagaggacaaatagttccccaaaagaaaattggagggctgctggaagggga
aagatgcaccggaaggccacagaatgccagacagccattccacgaagacacgcattaact
cacaaaggtcataccatctggccacaggcctcaagccagctggacacctcacaccggaca
gctctgccctgggaatcctggaaccccctgctagtaggcgccacgacccaggtcgaggaa
tgccctcagcacagagactgtcccctggggcagctcgccctactgcctgataagggcggc
tccttcgcggctcccagactctggagcctgcgggctgggctgcagccaaacgcagacacc
cctctaatgccgacagcctggcccccttaccctgtagctctccgccctcaggatgcattc
ttccccagaagctccctgcccacccccacctggaaggcctccctcgtctga

>gi568815578r:17842360_18068425|GENSCAN_predicted_peptide_2|183_aa
MRKQPPMWNTTIGIASMEIVWALIRAISRQRCFGTLRAWTQAVRMRSLSTGSVAGVCQRQ
KADGARFPSKRKSPFTELSLGITTKKPHKEKQDSCGFPPDAVPPAAKCLPAFPGLSTPHR
SQSASKPIPPPQTTMNAPSHTGTSDWEQGWSMGGGEPHTSPMACENASQKKTYQVHANNV
QQH

>gi568815578r:17842360_18068425|GENSCAN_predicted_CDS_2|552_bp
atgaggaagcagccacctatgtggaacaccaccattggaattgccagcatggagattgtc
tgggccctgataagagcaatttcaaggcagcggtgcttcggcaccttgagggcttggact
caggctgtcaggatgaggagcctatccacgggatcagttgctggtgtttgccaaaggcag
aaagcggatggtgcaaggtttccttccaaacggaaatcgcccttcacagagctgagcctg
ggaattaccacaaagaaacctcacaaagaaaagcaagatagctgtggattcccacctgat
gctgttcctcctgctgccaagtgcctgcctgcctttccaggtctcagcacaccacacagg
tcgcagtcagcatctaaacccatccccccaccccagaccactatgaatgcaccctcacat
acaggtaccagtgactgggaacagggctggagtatgggtggtggtgagccacatacttca
ccaatggcttgtgaaaatgcttctcaaaagaagacataccaggttcatgcaaacaacgtt
cagcagcactag

>gi568815578r:17842360_18068425|GENSCAN_predicted_peptide_3|362_aa
MPCSLQCSTVNCLCVGRLPLRSVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTF
QSPEFSVTRQHEDFVWLHDTLIETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTK
EEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKN
TKEMFGGFFKSVVKSADEVLFTGVKEVDDFFEQEKNFLINYYNRIKDSCVKADKMTRSHK
NVADDYIHTAACLHSLALEEPTVIKKYLLKVAELFEKLRKVEGRVSSDEDLKLTELLRYY
MLNIEAAKDLLYRRTKALIDYENSNKALDKARLKSKDVKLAEAHQQECCQKFEQLSESAK
EG

>gi568815578r:17842360_18068425|GENSCAN_predicted_CDS_3|1089_bp
atgccctgcagtctgcagtgttctactgtgaactgcttgtgtgttggcaggctaccgctg
agatctgtatctgtggacctgaatgttgatccctcgcttcagattgacatacctgatgcg
ctcagtgagagagacaaagtcaaatttacagtgcacacaaagaccacactgcccacgttt
cagagcccagagttttctgttacaaggcaacatgaagactttgtgtggctacatgacact
cttattgaaacaacagactatgctgggcttattattccacctgctcctacgaagcccgac
tttgatggtcctcgagagaagatgcagaaactgggagaaggtgaagggtctatgaccaaa
gaagaatttgccaagatgaaacaagaactggaagctgagtatctcgctgtgtttaagaag
actgtgtcctcccatgaagtctttcttcagcggctttcttctcaccctgttctcagtaaa
gatcgcaactttcatgttttcctggaatatgatcaggatctaagtgttaggcggaaaaat
actaaagagatgtttggtggcttcttcaaaagtgtggtgaaaagtgctgatgaagtcctt
tttactggagttaaggaggtagatgacttctttgagcaagagaagaacttccttattaac
tattacaataggatcaaagattcttgtgtgaaagctgacaaaatgaccagatctcataaa
aatgttgccgatgactatatccacaccgcagcctgcttacatagcctggctttagaagag
cccacagtcatcaaaaagtacctattgaaggttgctgagctatttgaaaaactaaggaaa
gtagagggtcgagtttcatcagatgaagatttgaagctaacagagctcctccgatactac
atgctcaacattgaagctgctaaggatctcttatacagacgcaccaaagccctcattgac
tatgagaactcaaacaaagctctggataaggcccggttaaagagcaaagacgtcaagttg
gctgaggcacaccagcaggagtgctgccagaaatttgaacaactttccgaatctgcaaaa
gaaggttga

>gi568815578r:17842360_18068425|GENSCAN_predicted_peptide_4|450_aa
MAASSHGLWTRKGKNAATPELAGPPAQESEAGRTSPCCGPPPAAAATREPRPWRRGTRAG
AAWLCEERRSWAAAAAAWAPLGGGHGPASAGLPARRRQEASGLRHHPSCPGSRRAGRHVL
PQSSLPVPAAVHLGAGQRRHVGPTLAPLHEEAANRRAATRTGSNGHSPSKTRLEKDRVSV
RGEFITQPESKMAASADVTRSRESRRARFGGSRASETPALPLGEKKVNPYEEVDQEKYSN
LVQSVLSSRGVAQTPGSVEEDALLCGPVSKHKLPNQDVFLQGKRFHEALESILSPQETLK
ERDENLLKSGYIESVQHILKDVSGVRALESAVQHETLNYIGLLDCVAEYQGKLCVIDWKT
SEKPKPFIQSTFDNPLQVVAYMGAMNHDTNYSFQVQCGLIVVAYKDGSPAHPHFMDAELC
SQYWTKWLLRLEEYTEKKKNQNIQKPEYSE

>gi568815578r:17842360_18068425|GENSCAN_predicted_CDS_4|1353_bp
atggcggcgagcagccacggcctatggacgcgcaagggaaagaatgcagcgaccccggag
ctcgcagggccgcccgcccaggagtctgaggctgggaggacctcaccttgctgcggtcct
cctcctgctgctgcagcaactcgggaaccgcggccatggcgacgcgggactcgagcaggg
gccgcctggctgtgcgaggaaagaagaagctgggccgccgccgccgccgcctgggcgcct
ctcgggggcggccacggccccgcctccgccggcctccctgcccgacggcggcaggaggcc
tccggactccgccaccatcccagctgccccgggagcaggcgagcagggcgccacgtgctc
ccccagagcagcctcccagtccccgctgccgtccatcttggagccgggcaaagacgccac
gtggggcctacccttgctccgctccacgaggaggccgccaaccgcagggccgcgacacgg
acgggaagcaacggacactctcccagcaagacgcgtctagagaaagaccgcgtttcggtg
cggggggaatttattactcagcccgagtccaagatggcagcgagcgctgacgtcaccaga
tctcgtgagagcagaagggcgcgatttggaggctcccgcgcttcggagacgccggccctt
ccgctcggagagaaaaaagtgaacccatatgaagaagtggaccaagaaaaatactctaat
ttagttcagtctgtcttgtcatccagaggcgtcgcccagaccccgggatcggtggaggaa
gatgctttgctctgtggacccgtgagcaagcataagctgccaaaccaagacgtcttttta
caagggaaacggttccacgaagccttggaaagcatactttcaccccaggaaaccttaaaa
gagagagatgaaaatctcctcaagtctggttacattgaaagtgtccagcatattctgaaa
gatgtcagtggagtgcgagctcttgaaagtgctgttcaacatgaaaccttaaactatata
ggtctgctggactgtgtggctgagtatcagggcaagctctgtgtgattgattggaagaca
tcagagaaaccaaagccttttattcaaagtacatttgacaacccactgcaagttgtggca
tacatgggtgccatgaaccatgataccaactacagctttcaggttcaatgtggcttaatt
gtggtggcctacaaagatggatcacctgcccacccacatttcatggatgcagagctctgt
tcccagtactggaccaagtggcttcttcgactagaagaatatacggaaaagaaaaagaac
cagaatattcagaaaccagaatattcagaatag

>gi568815578r:17842360_18068425|GENSCAN_predicted_peptide_5|147_aa
MSDAAVDTSSEITTKDLKKKEAVEEAENGRDTPANGKANEENGEQEADNEVDEEEEEGGE
EDEEEEEGDGEEEDGDEDEEAESARTFSFGTYHVLGAQTSPHREETIRRGPCGEELRPLA
NHQHELPGSRENGPSDEAQAPAFESFS

>gi568815578r:17842360_18068425|GENSCAN_predicted_CDS_5|444_bp
atgtcagacgcagccgtagacaccagctccgaaatcaccaccaaggacttaaagaagaag
gaagctgtggaggaagcggaaaatggaagagacacccctgctaatgggaaggctaatgag
gaaaatggggagcaggaagctgacaatgaagtagatgaagaagaggaagaaggtggggag
gaagacgaggaggaagaagaaggcgatggtgaggaagaggatggtgatgaagacgaggaa
gctgagtccgctaggaccttctcctttggaacctaccacgtccttggagcccaaaccagc
ccacacagagaggagaccataaggagaggtccatgtggagaggaattgaggcccctagcc
aaccaccagcatgaactaccaggttcacgagagaatgggccttcagatgaagcccaggcc
ccagcctttgagtctttcagctga

>gi568815578r:17842360_18068425|GENSCAN_predicted_peptide_6|306_aa
MPKVFLVKRRSLGVSVRSWDELPDEKRADTYIPVGLGRLLHDPPEDCRSDGGSSSGSGSS
SAGEPGGAESSSSPHAPESETPEPGDAEGPDGHLATKQRPVARSKIKVTVGALVSRKEWR
RKKAPFAPLQGDFYFIGQFTTGTCSDSVVHSCDLCGKGFRLQRMLNRHLKCHNQVKRHLC
TFCGKGFNDTFDLKRHVRTHTGIRPYKCNVCNKAFTQRCSLESHLKKIHGVQQQYAYKQR
RDKLYVCEDCGYTGPTQEDLYLHVNSAHPGSSFLKKTSKKLAALLQGKLTSAHQENTSLS
EEEERK

>gi568815578r:17842360_18068425|GENSCAN_predicted_CDS_6|921_bp
atgcccaaagtcttcctggtgaagaggaggagcctgggggtctcggtccgcagctgggat
gagctcccggatgagaaaagggcagacacctacatcccagtgggcctaggccgcctgctc
cacgacccccccgaggactgccgcagcgacggcggcagcagcagcggcagcggcagcagc
agcgcgggggagcctggaggagcagagagcagctcgtccccgcacgcccccgagagcgaa
acccccgagcccggcgacgccgagggccccgatggacacctggcgaccaagcagcgcccg
gtcgccagatcgaaaatcaaggtgactgttggtgctctagtcagcaggaaggagtggagg
aggaagaaggcaccgtttgctccccttcaaggagatttctatttcattggccagttcacc
acaggcacgtgcagcgactcggtggttcacagctgtgacctgtgtggcaagggcttccgt
ctgcagcgcatgctgaaccgtcacctcaagtgccacaaccaggtgaaaagacacctgtgc
accttctgcggcaagggcttcaacgacaccttcgacctgaagaggcacgtccgcacacac
acaggcattcgtccctacaaatgcaacgtctgcaataaagccttcacccagcgctgctct
ctggagtcccacctgaagaaaatccatggggtgcagcagcagtatgcctataagcagcgg
cgggacaagctctacgtctgcgaggattgcggctacacgggccccacccaggaggacctg
tacctgcacgtgaacagtgcccatccgggcagctcgtttctcaaaaagacatctaaaaaa
ctggcagcccttctgcagggcaagctgacatccgcacaccaggagaataccagcctgagt
gaggaggaggagaggaagtga