FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8140, 271 aa
  1>>>pF1KB8140 271 - 271 aa - 271 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1243+/-0.000783; mu= 16.0519+/- 0.047
 mean_var=70.3836+/-13.981, 0's: 0 Z-trim(108.2): 44  B-trim: 0 in 0/50
 Lambda= 0.152876
 statistics sampled from 9988 (10030) to 9988 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.308), width:  16
 Scan time:  2.540

The best scores are:                                      opt bits E(32554)
CCDS3081.1 SRPRB gene_id:58477|Hs108|chr3          ( 271) 1710 386.0 1.5e-107


>>CCDS3081.1 SRPRB gene_id:58477|Hs108|chr3               (271 aa)
 initn: 1710 init1: 1710 opt: 1710  Z-score: 2044.1  bits: 386.0 E(32554): 1.5e-107
Smith-Waterman score: 1710; 100.0% identity (100.0% similar) in 271 aa overlap (1-271:1-271)

               10        20        30        40        50        60
pF1KB8 MASADSRRVADGGGAGGTFQPYLDTLRQELQQTDPTLLSVVVAVLAVLLTLVFWKLIRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MASADSRRVADGGGAGGTFQPYLDTLRQELQQTDPTLLSVVVAVLAVLLTLVFWKLIRSR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RSSQRAVLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RSSQRAVLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCAVYRVNNNRGNSLTLIDLPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 HESLRLQFLERFKSSARAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 HESLRLQFLERFKSSARAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 KQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLK
              190       200       210       220       230       240

              250       260       270 
pF1KB8 VEFLECSAKGGRGDVGSADIQDLEKWLAKIA
       :::::::::::::::::::::::::::::::
CCDS30 VEFLECSAKGGRGDVGSADIQDLEKWLAKIA
              250       260       270 




271 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:56:21 2016 done: Fri Nov  4 09:56:21 2016
 Total Scan time:  2.540 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]