GENSCAN 1.0	Date run:  4-Nov-116	Time: 09:52:50

Sequence gi568815577f:46536952_46763556 : 173032 bp : 44.88% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +    495    588   94  2  1   98   92   162 0.722  17.14
 1.02 Intr +   1532   1651  120  0  0   94   67   126 0.954  11.57
 1.03 Intr +   2926   3040  115  2  1   73   91   123 0.685  10.61
 1.04 Intr +   4805   4944  140  2  2  112   94   109 0.901  14.01
 1.05 Intr +   8186   8322  137  0  2  101   68    53 0.987   4.89
 1.06 Intr +   8930   9010   81  1  0   95   76    82 0.712   7.53
 1.07 Intr +   9964  10091  128  0  2   68   64   260 0.901  21.08
 1.08 Intr +  12820  12934  115  1  1   99   80   233 0.995  24.05
 1.09 Intr +  13592  13793  202  1  1   83   92   107 0.992   9.46
 1.10 Intr +  14683  14792  110  2  2   60   56    55 0.484  -0.50
 1.11 Intr +  14873  14953   81  1  0   55  100    85 0.756   6.23
 1.12 Intr +  17218  17341  124  0  1   35   80    34 0.612  -2.54
 1.13 Intr +  17624  17745  122  0  2  106   69   201 0.607  20.21
 1.14 Intr +  17871  17982  112  2  1   94   96   130 0.992  14.35
 1.15 Intr +  18036  18070   35  1  2  118   66   -12 0.485  -2.46
 1.16 Intr +  18928  19140  213  0  0   87  100    78 0.786   7.81
 1.17 Intr +  19988  20118  131  1  2   59  109   123 0.998  10.99
 1.18 Intr +  20634  20802  169  0  1   80   96   262 0.999  26.15
 1.19 Intr +  21272  21442  171  1  0  109   94   219 0.992  24.74
 1.20 Intr +  23771  23832   62  1  2  102   95   130 0.997  12.63
 1.21 Intr +  25492  25633  142  1  1   56   64    34 0.591  -1.84
 1.22 Intr +  26907  26981   75  2  0   79   83    39 0.534   2.21
 1.23 Intr +  28762  28936  175  0  1   46   78   189 0.997  13.21
 1.24 Intr +  29609  29732  124  0  1   51   83   195 0.997  14.94
 1.25 Intr +  30419  30667  249  2  0  114   58   587 0.449  54.85
 1.26 Intr +  30821  30947  127  2  1   97   40    35 0.026   0.28
 1.27 Intr +  45768  45896  129  2  0   73   98    31 0.006   3.49
 1.28 Intr +  49040  49185  146  1  2   38   47   133 0.007   3.28
 1.29 Term +  61858  61987  130  1  1   42   43   150 0.075   3.55
 1.30 PlyA +  62005  62010    6                              -3.24

 2.03 PlyA -  62033  62028    6                              -0.45
 2.02 Term -  62552  62412  141  2  0   69   50   229 0.920  15.13
 2.01 Init -  65464  65327  138  1  0   43  105   186 0.721  15.94
 2.00 Prom -  77462  77423   40                              -1.56

 3.00 Prom +  83843  83882   40                              -3.46
 3.01 Init +  87618  87682   65  2  2   80  116    52 0.690   5.96
 3.02 Intr +  88665  88824  160  0  1  101   47    24 0.147  -0.41
 3.03 Intr + 106584 106688  105  2  0   65   68   157 0.761  11.81
 3.04 Intr + 107355 107537  183  2  0   86   32   126 0.937   6.78
 3.05 Intr + 111507 111668  162  2  0   64  101   158 0.904  14.87
 3.06 Intr + 112624 112788  165  0  0  108   81   372 0.975  38.66
 3.07 Intr + 121794 121969  176  2  2   72  100   242 0.972  22.54
 3.08 Intr + 123882 124011  130  0  1   96   78    34 0.994   3.90
 3.09 Intr + 124849 124985  137  0  2   47   86   233 0.943  18.37
 3.10 Intr + 126432 126603  172  0  1   87   69    67 0.810   4.65
 3.11 Term + 126956 127042   87  1  0   89   38    63 0.692  -0.94
 3.12 PlyA + 127142 127147    6                               1.05

 4.00 Prom + 130138 130177   40                              -6.76
 4.01 Init + 130267 130556  290  0  2   82  105   247 0.494  20.39
 4.02 Term + 153850 154294  445  1  1  -16   35   477 0.102  26.71
 4.03 PlyA + 160630 160635    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  42841  42485  357  1  0   67   48   166 0.987   6.56
S.002 Sngl + 153932 154294  363  1  0   27   35   431 0.847  27.78


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815577f:46536952_46763556|GENSCAN_predicted_peptide_1|1252_aa
SVMNRMHVVSVPYALMKANPLSWIQKVCFYKARAALVKSRDMHWSLLAQRGQRDVSLSSL
RMLIVADGANPWSISSCDAFLNVFQSRGLRPEVICPCASSPEALTVAIRRPPDLGGPPPR
KAVLSMNGLSYGVIRVDTEEKLSVLTVQDVGQVMPGANVCVVKLEGTPYLCKTDEVGEIC
VSSSATGTAYYGLLGITKNVFEAVPVTTGGAPIFDRPFTRTGLLGFIGPDNLVFIVGKLD
GLMVTGVRRHNADDVVATALAVEPMKFVYRGRIAVFSVTVLHDDRIVLVAEQRPDASEED
SFQWMSRVLQAIDSIHQVGVYCLALVPANTLPKAPLGGIHISETKQRFLEGTLHPCNVLM
CPHTCVTNLPKPRQKQPEVGPASMIVGNLVAGKRIAQASGRELAHLEDSDQARKFLFLAD
VLQWRAHTTPDHPLFLLLNAKGTVTSTATCVQLHKRAERVAAALMEKGRLSVGDHVALVY
PPGVDLIAAFYGCLYCGCVPVTVRPPHPQNLGTTLPTVKMIVEVSKSACVLTTQAVTRLL
RSKEAAAAVDIRTWPTILDTGVVWPGCRPKTHDSQGQIMCRLLPVKAQSVQNTCGNTNVA
GVSCLTDDIPKKKIASVFRPPSPDVLAYLDFSVSTTGILAGVKMSHAATSALCRSIKLQC
ELYPSRQIAICLDPYCGLGFALWCLCSVYSGHQSVLVPPLELESNVSLWLSAVSQYKARV
TFCSYSVMEMCTKGLGAQTGVLRMKGVNLSCVRTCMVVAEERPRIALTQSFSKLFKDLGL
PARAVSTTFGCRVNVAICLQGTAGPDPTTVYVDMRALRHDRGKGRSLATLTPFTAMATAT
CGESERGPERDPAKPCDVQDTDSCRAAGILPGVKVIIAHTETKGPLGDSHLGEIWVSSPH
NATGYYTVYGEEALHADHFSARLSFGDTQTIWARTGYLGFLRRTELTDASGGRHDALYVV
GSLDETLELRGMRYHPIDIETSVIRAHRSIAECAVFTWTNLLVVVVELDGLEQDALDLVA
LVTNVVLEEHYLVVGVVVIVDPGVIPINSRGEKQRMHLRDGFLADQLDPIYVAYNIKHFL
NYLKKYFESAKYIYKNTDAGILTDGETRKGKERPGMGIWEPPMAAASSRPSFHFAGNFFN
NQVNMPNGNLDPQKKQREPVKETTSLGKGGEYYIKGISHGTKESEQQPSALDLPSERGYP
SEKEPENQLRSAASAERSPGDQAHPGKQAEATTPLQGHTGQPAVICMDEERI

>gi568815577f:46536952_46763556|GENSCAN_predicted_CDS_1|3759_bp
agcgtcatgaacaggatgcacgtggtcagcgtcccctacgcgctgatgaaggcgaaccca
ctctcctggatccagaaagtgtgcttctataaagctcgggccgcgctggtgaagtcgcga
gacatgcactggtctctcctagctcagcggggccagagggacgtcagcctcagctcactg
cgcatgctgattgtggccgatggtgccaacccgtggtcgatctcctcctgtgacgccttc
ctcaacgtcttccagtccagaggtctgaggccagaggtcatctgtccttgtgcaagttct
cctgaggcgctgactgtcgccatccgcaggccacctgatctgggaggaccacctccaaga
aaagcagtcctgtcgatgaacggtctaagttatggtgttatcagagtggatactgaagaa
aagttgtcagtccttactgttcaggacgttggtcaggtgatgcctggagctaatgtatgt
gttgtgaagttagaaggtaccccttatctttgtaaaactgatgaagtgggagaaatatgc
gtcagttccagtgcaactggcacagcgtactatggattgcttggaatcacgaagaatgtg
tttgaggcagttccggtcaccacaggaggagcacccatctttgacaggccattcaccagg
acaggcctgctgggcttcatcgggcctgacaacctggtcttcatcgtgggcaaactggac
gggctgatggtcactggagttcgcagacacaatgcagatgacgttgtggccaccgcactg
gccgtggagcccatgaagtttgtctacagaggcaggatcgctgtgttctctgtgaccgtg
ctgcacgacgaccggattgtcctggtggctgagcagcggccggatgcctcggaggaggac
agcttccagtggatgagccgtgtgctgcaggccattgatagcatccaccaggtgggcgtg
tactgtctggccctggttcctgccaacaccttgcccaaggctcctctcggagggattcac
atttctgaaaccaaacagcgctttctggaagggacgctgcacccgtgtaatgtgctgatg
tgccctcacacctgtgttaccaacctccccaaacctcgtcagaaacaaccagaggttgga
ccagcctcaatgatcgtggggaacctggttgctgggaagagaatcgctcaggcttccggg
agagagctcgcccacctggaggacagcgaccaggcacggaagttcctgttcctggctgac
gtgctgcagtggcgtgcccacaccactcctgaccacccgctgttcttgctgctgaacgcc
aagggcaccgtcacaagcactgcaacctgtgtccagctgcacaaaagggctgagagagtg
gccgcggctctgatggagaagggaagactgagtgttggggaccatgtggctctggtctac
ccaccaggggtggacctcattgccgcgttctatggctgcttgtactgtggctgcgtgcct
gtcaccgtgcggcccccgcaccctcagaacctcggcaccacactgcccaccgtcaagatg
atcgtggaggtcagcaagtctgcatgcgtcctcaccacgcaggctgtcacacggctgctc
aggtccaaggaggctgctgctgccgtggacatcaggacctggcccaccatcctagacaca
ggtgtggtgtggcctggctgccgtccaaaaacacacgactcccaaggacaaatcatgtgt
cgcctcttgcctgtgaaagcccagagcgttcagaatacatgtgggaacactaatgttgct
ggtgtctcctgtttaacagatgacatcccaaaaaagaagatagcaagcgttttcaggccc
ccctcccccgatgtcctcgcatacttggacttcagcgtgtcaaccactgggatattagcg
ggagtgaagatgtcgcacgcggccacaagcgccttatgccgctccataaagctgcagtgt
gagctgtacccctcgcggcagatcgccatctgcctcgacccctactgtggccttggtttt
gccctgtggtgtctgtgcagtgtctactcgggacaccaatcagtgctggtgcccccgctg
gagctggagagcaacgtgtccctgtggctgtcggccgtcagccagtacaaggcccgcgtc
accttctgctcctactctgtgatggagatgtgcaccaagggcctaggcgcacagacgggt
gtcctcaggatgaagggggtgaacctgtcatgtgtgcgcacgtgcatggtggtcgccgag
gagcggcccaggattgcgctgacccagtccttctccaagctcttcaaggacctgggcctg
ccggcccgcgccgtaagcaccacgttcgggtgcagggtcaacgtggccatctgcctccag
ggcacagctggcccggaccccacaaccgtctacgtggacatgcgggcactgcgccatgac
agaggcaagggaaggagcttggccaccctgactccgttcactgccatggccacagccacc
tgtggggagtcagagaggggtccagagagggacccagccaagccatgtgatgtccaggat
acagactcctgcagggcagcagggatcctccccggcgtgaaggtcatcatcgcacacacc
gagaccaaaggacccttgggagactcacacctgggagagatctgggtaagcagcccccac
aatgccaccgggtactacaccgtttacggggaggaggcgcttcatgccgaccacttcagt
gcccggctgagttttggagacacacagaccatctgggcaaggaccggctaccttggcttc
cttcggcgaacagagctcactgatgccagtggagggcggcacgatgcactgtatgtggtt
gggtctctggatgaaactctggagctcagaggcatgcggtaccaccccatcgacattgag
acctctgtcatccgagcacacaggagcatcgctgagtgtgccgtattcacctggaccaac
ctgctggtggtggtggtggagctggatgggctagagcaggatgccctggacctggtggcc
ctggtgaccaacgtggtgctggaggagcactacctggtcgtgggagtggtggtcatcgtg
gacccaggggtgatccctatcaactctcggggtgagaagcagcgcatgcacctgcgggac
ggcttcctggctgaccagctggaccccatctatgtcgcctacaacataaagcacttcctg
aattatttaaagaaatattttgaatctgccaagtacatttacaaaaacacggatgctggt
attttaacagatggagagacaaggaaaggaaaggaaaggcctggcatgggcatttgggag
ccaccaatggcagctgcttctagtaggccatctttccactttgctggtaatttttttaac
aaccaagtgaatatgccaaatggtaacttggatccacagaaaaagcaaagagaaccagta
aaggaaaccacatcattaggaaaagggggagagtactacatcaagggaatatcccatggg
acaaaagaatctgaacaacagccttcagctctagaccttccctctgagagaggctaccca
agtgagaaggaaccagaaaaccaactccggagcgctgccagcgctgagcgttcacctggt
gatcaggcgcatcccgggaagcaggccgaagccaccacgcccttgcagggccacaccggc
caaccagctgttatctgcatggatgaggaacgcatttaa

>gi568815577f:46536952_46763556|GENSCAN_predicted_peptide_2|92_aa
MSELEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMET
LDNDGDGECDFQEFMAFVAMVTTACHEFFEHE

>gi568815577f:46536952_46763556|GENSCAN_predicted_CDS_2|279_bp
atgtctgagctggagaaggccatggtggccctcatcgacgttttccaccaatattctgga
agggagggagacaagcacaagctgaagaaatccgaactgaaggagctcatcaacaatgag
ctttcccatttcttagaggaaatcaaagagcaggaggttgtggacaaagtcatggaaaca
ctggacaatgatggagacggcgaatgtgacttccaggaattcatggcctttgttgccatg
gttactactgcctgccacgagttctttgaacatgagtga

>gi568815577f:46536952_46763556|GENSCAN_predicted_peptide_3|513_aa
MLAVRCPARPCVFSVLWFLGGRLVTSRAKHLAQPLHPMSNGDGDRTDTLAPATQKGETEA
KSRQSAEILKSNLTQGEEPAECSEAGLLQEGVQPEEFVAIADYAATDETQLSFLRGEKIL
ILRQTTADWWWGERAGCCGYIPANHVGKHVDEYDPEDTWQDEEYFGSYGTLKLHLEMLAD
QPRTTKYHSVILQNKESLTDKVILDVGCGTGIISLFCAHYARPRAVYAVEASEMAQHTGQ
LVLQNGFADIITVYQQKVEDVVLPEKVDVLVSEWMGTCLLFEFMIESILYARDAWLKEDG
VIWPTMAALHLVPCSADKDYRSKVLFWDNAYEFNLSALKSLAVKEFFSKPKYNHILKPED
CLSEPCTILQLDMRTVQISDLETLRGELRFDIRKAGTLHGFTAWFSVHFQSLQEGQPPQV
LSTGPFHPTTHWKQTLFMMDDPVPVHTGDVVTGSVVLQRNPVWRRHMSVALSWAVTSRQD
PTSQKASVASQAAVSLGVSSVMRVLTGSLRIRV

>gi568815577f:46536952_46763556|GENSCAN_predicted_CDS_3|1542_bp
atgttggccgtcaggtgccctgccaggccctgcgtgttcagtgtgctctggttcctggga
ggaagacttgtgacctcaagagccaagcacctggcccaacctcttcaccctatgtctaat
ggggatggggataggacagacaccttggcccctgccactcagaagggggaaactgaggca
aaaagcaggcagtctgcagagattctgaaatccaacctgacccagggagaagagcctgct
gagtgcagtgaggccggtctcctgcaggagggagtacagccagaggagtttgtggccatc
gcggactacgctgccaccgatgagacccagctcagttttttgagaggagaaaaaattctt
atcctgagacaaaccactgcagattggtggtggggtgagcgtgcgggctgctgtgggtac
attccggcaaaccatgtggggaagcacgtggatgagtacgaccccgaggacacgtggcag
gatgaagagtacttcggcagctatggaactctgaaactccacttggagatgttggcagac
cagccacgaacaactaaataccacagtgtcatcctgcagaataaagaatccctgacggat
aaagtcatcctggacgtgggctgtgggactgggatcatcagtctcttctgtgcacactat
gcgcggcctagagcggtgtacgcggtggaggccagtgagatggcacagcacacggggcag
ctggtcctgcagaacggctttgctgacatcatcaccgtgtaccagcagaaggtggaggat
gtggtgctgcccgagaaggtggacgtgctggtgtctgagtggatggggacctgcctgctg
tttgagttcatgatcgagtccatcctgtatgcccgggatgcctggctgaaggaggacggg
gtcatttggcccaccatggctgcgttgcaccttgtgccctgcagtgctgataaggattat
cgtagcaaggtgctcttctgggacaacgcgtacgagttcaacctcagcgctctgaaatct
ttagcagttaaggagtttttttcaaagcccaagtataaccacattttgaaaccagaagac
tgtctctctgaaccgtgcactatattgcagttggacatgagaaccgtgcaaatttctgat
ctagagaccctgaggggcgagctgcgcttcgacatcaggaaggcggggaccctgcacggc
ttcacggcctggtttagcgtccacttccagagcctgcaggaggggcagccgccgcaggtg
ctcagcaccgggcccttccaccccaccacacactggaagcagacgctgttcatgatggac
gacccagtccctgtccatacaggagacgtggtcacgggttcagttgtgttgcagagaaac
ccagtgtggagaaggcacatgtctgtggctctgagctgggctgtcacttccagacaagac
cccacatctcaaaaagcctctgtggcttcccaggcagcagttagtctaggcgtgtcgtct
gtgatgcgtgttctgactggcagccttcggatccgtgtgtga

>gi568815577f:46536952_46763556|GENSCAN_predicted_peptide_4|244_aa
MQRALCAWRALFACWALCACWALCAREGAATLTRKAASGSRCAQLPALGFQRPASSYSNQ
RDLPSPGAPRGVCARFFPKREGAGGSAARGTGSGSVRRSQSEGLKGQEGSVERCPQPHAK
KKIRMSLTFRRPKTLRLRRQPRYPRKSTPRRNKLGHYAIIKFPLTTESAVKKIEENNTLV
FTVDVKANKHQIRQAVKKLYDSDVAKVTTLICPDKEKAYVRLAPDYDAFDVVTKLGSPKL
SPAG

>gi568815577f:46536952_46763556|GENSCAN_predicted_CDS_4|735_bp
atgcagagggctctgtgcgcctggcgggctctgtttgcctgctgggctctgtgcgcctgc
tgggctctgtgcgcccgggaaggtgcggccaccctcacgcggaaggcggccagcggatcc
cggtgcgcgcagctcccagcgctggggttccagcgccccgcctcttcctatagcaaccag
cgggacctgccgtcccccggggcaccccgaggggtctgcgcccgcttctttccgaaacgg
gaaggcgctgggggctcggcagccagagggacgggttcagggagcgtccgccgaagccaa
agcgaaggccttaaaggccaagaaggcagtgttgaaaggtgtccgcagccacacgcaaaa
aagaagatccgcatgtcactcaccttcaggcggcccaagacactgcgactccggaggcag
cccagatatcctcggaagagcacccccaggagaaacaagcttggccactatgctatcatc
aagtttccgctgaccactgagtcggccgtgaagaagatagaagaaaacaacacgcttgtg
ttcactgtggatgttaaagccaacaagcaccagatcagacaggctgtgaagaagctctat
gacagtgatgtggccaaggtcaccaccctgatttgtcctgataaagagaaggcatatgtt
cgacttgctcctgattatgatgctttcgatgttgtaacaaaattgggatcacctaaactg
agtccagctggctaa