Result of FASTA (omim) for pF1KB8129
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8129, 341 aa
  1>>>pF1KB8129 341 - 341 aa - 341 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5983+/-0.000353; mu= 10.2453+/- 0.022
 mean_var=102.7869+/-19.739, 0's: 0 Z-trim(116.5): 51  B-trim: 116 in 2/54
 Lambda= 0.126504
 statistics sampled from 27640 (27691) to 27640 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.325), width:  16
 Scan time:  5.210

The best scores are:                                      opt bits E(85289)
NP_036534 (OMIM: 601638) arfaptin-2 isoform 2 [Hom ( 341) 2216 414.8 1.3e-115
XP_005252897 (OMIM: 601638) PREDICTED: arfaptin-2  ( 341) 2216 414.8 1.3e-115
NP_001229784 (OMIM: 601638) arfaptin-2 isoform 3 [ ( 303) 1963 368.6 9.5e-102
NP_001229783 (OMIM: 601638) arfaptin-2 isoform 1 [ ( 374) 1794 337.8 2.2e-92
NP_001229785 (OMIM: 601638) arfaptin-2 isoform 4 [ ( 256) 1506 285.2 1.1e-76
NP_001020764 (OMIM: 605928) arfaptin-1 isoform 2 [ ( 341) 1358 258.2 1.8e-68
NP_001274362 (OMIM: 605928) arfaptin-1 isoform 2 [ ( 341) 1358 258.2 1.8e-68
NP_055262 (OMIM: 605928) arfaptin-1 isoform 2 [Hom ( 341) 1358 258.2 1.8e-68
XP_011530173 (OMIM: 605928) PREDICTED: arfaptin-1  ( 347) 1329 252.9 7.2e-67
XP_011530174 (OMIM: 605928) PREDICTED: arfaptin-1  ( 296) 1261 240.5 3.5e-63
NP_001020766 (OMIM: 605928) arfaptin-1 isoform 1 [ ( 373) 1261 240.6 4.2e-63
NP_001274360 (OMIM: 605928) arfaptin-1 isoform 1 [ ( 373) 1261 240.6 4.2e-63
NP_001274361 (OMIM: 605928) arfaptin-1 isoform 1 [ ( 373) 1261 240.6 4.2e-63
XP_011530172 (OMIM: 605928) PREDICTED: arfaptin-1  ( 373) 1261 240.6 4.2e-63
XP_011530171 (OMIM: 605928) PREDICTED: arfaptin-1  ( 373) 1261 240.6 4.2e-63
XP_011530170 (OMIM: 605928) PREDICTED: arfaptin-1  ( 379) 1261 240.6 4.2e-63
XP_016884584 (OMIM: 605926) PREDICTED: PRKCA-bindi ( 334)  178 42.9  0.0012
XP_016884579 (OMIM: 605926) PREDICTED: PRKCA-bindi ( 385)  178 42.9  0.0014
XP_016884581 (OMIM: 605926) PREDICTED: PRKCA-bindi ( 385)  178 42.9  0.0014
XP_006724442 (OMIM: 605926) PREDICTED: PRKCA-bindi ( 287)  175 42.3  0.0016
XP_016884582 (OMIM: 605926) PREDICTED: PRKCA-bindi ( 287)  175 42.3  0.0016
XP_016884583 (OMIM: 605926) PREDICTED: PRKCA-bindi ( 287)  175 42.3  0.0016
XP_006724443 (OMIM: 605926) PREDICTED: PRKCA-bindi ( 287)  175 42.3  0.0016
XP_016884580 (OMIM: 605926) PREDICTED: PRKCA-bindi ( 327)  175 42.3  0.0017
NP_001034672 (OMIM: 605926) PRKCA-binding protein  ( 415)  175 42.4  0.0021
NP_036539 (OMIM: 605926) PRKCA-binding protein [Ho ( 415)  175 42.4  0.0021
NP_001034673 (OMIM: 605926) PRKCA-binding protein  ( 415)  175 42.4  0.0021


>>NP_036534 (OMIM: 601638) arfaptin-2 isoform 2 [Homo sa  (341 aa)
 initn: 2216 init1: 2216 opt: 2216  Z-score: 2196.5  bits: 414.8 E(85289): 1.3e-115
Smith-Waterman score: 2216; 100.0% identity (100.0% similar) in 341 aa overlap (1-341:1-341)

               10        20        30        40        50        60
pF1KB8 MTDGILGKAATMEIPIHGNGEARQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MTDGILGKAATMEIPIHGNGEARQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GLIPTGSGRHPSHSTTPSGPGDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGRGSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 GLIPTGSGRHPSHSTTPSGPGDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGRGSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 TVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 TVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 EFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 EFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 DLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 DLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLL
              250       260       270       280       290       300

              310       320       330       340 
pF1KB8 FHNAVSAYFAGNQKQLEQTLQQFNIKLRPPGAEKPSWLEEQ
       :::::::::::::::::::::::::::::::::::::::::
NP_036 FHNAVSAYFAGNQKQLEQTLQQFNIKLRPPGAEKPSWLEEQ
              310       320       330       340 

>>XP_005252897 (OMIM: 601638) PREDICTED: arfaptin-2 isof  (341 aa)
 initn: 2216 init1: 2216 opt: 2216  Z-score: 2196.5  bits: 414.8 E(85289): 1.3e-115
Smith-Waterman score: 2216; 100.0% identity (100.0% similar) in 341 aa overlap (1-341:1-341)

               10        20        30        40        50        60
pF1KB8 MTDGILGKAATMEIPIHGNGEARQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MTDGILGKAATMEIPIHGNGEARQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GLIPTGSGRHPSHSTTPSGPGDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGRGSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GLIPTGSGRHPSHSTTPSGPGDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGRGSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 TVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 EFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 DLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLL
              250       260       270       280       290       300

              310       320       330       340 
pF1KB8 FHNAVSAYFAGNQKQLEQTLQQFNIKLRPPGAEKPSWLEEQ
       :::::::::::::::::::::::::::::::::::::::::
XP_005 FHNAVSAYFAGNQKQLEQTLQQFNIKLRPPGAEKPSWLEEQ
              310       320       330       340 

>>NP_001229784 (OMIM: 601638) arfaptin-2 isoform 3 [Homo  (303 aa)
 initn: 1963 init1: 1963 opt: 1963  Z-score: 1947.7  bits: 368.6 E(85289): 9.5e-102
Smith-Waterman score: 1963; 100.0% identity (100.0% similar) in 303 aa overlap (39-341:1-303)

       10        20        30        40        50        60        
pF1KB8 AATMEIPIHGNGEARQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGDGLIPTGSG
                                     ::::::::::::::::::::::::::::::
NP_001                               MVSGPNLNETSIVSGGYGGSGDGLIPTGSG
                                             10        20        30

       70        80        90       100       110       120        
pF1KB8 RHPSHSTTPSGPGDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGRGSRTVDLELEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RHPSHSTTPSGPGDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGRGSRTVDLELEL
               40        50        60        70        80        90

      130       140       150       160       170       180        
pF1KB8 QIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAET
              100       110       120       130       140       150

      190       200       210       220       230       240        
pF1KB8 QKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLG
              160       170       180       190       200       210

      250       260       270       280       290       300        
pF1KB8 PRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAY
              220       230       240       250       260       270

      310       320       330       340 
pF1KB8 FAGNQKQLEQTLQQFNIKLRPPGAEKPSWLEEQ
       :::::::::::::::::::::::::::::::::
NP_001 FAGNQKQLEQTLQQFNIKLRPPGAEKPSWLEEQ
              280       290       300   

>>NP_001229783 (OMIM: 601638) arfaptin-2 isoform 1 [Homo  (374 aa)
 initn: 1794 init1: 1794 opt: 1794  Z-score: 1779.6  bits: 337.8 E(85289): 2.2e-92
Smith-Waterman score: 2133; 91.2% identity (91.2% similar) in 373 aa overlap (2-341:2-374)

               10        20        30        40        50        60
pF1KB8 MTDGILGKAATMEIPIHGNGEARQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGD
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTDGILGKAATMEIPIHGNGEARQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGD
               10        20        30        40        50        60

                                                70        80       
pF1KB8 GLIPTG---------------------------------SGRHPSHSTTPSGPGDEVARG
       ::::::                                 :::::::::::::::::::::
NP_001 GLIPTGKSISCARREVWVGPQRCLVYLREAGVRELDPLGSGRHPSHSTTPSGPGDEVARG
               70        80        90       100       110       120

        90       100       110       120       130       140       
pF1KB8 IAGEKFDIVKKWGINTYKCTKQLLSERFGRGSRTVDLELELQIELLRETKRKYESVLQLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IAGEKFDIVKKWGINTYKCTKQLLSERFGRGSRTVDLELELQIELLRETKRKYESVLQLG
              130       140       150       160       170       180

       150       160       170       180       190       200       
pF1KB8 RALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLGAVNFFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLGAVNFFV
              190       200       210       220       230       240

       210       220       230       240       250       260       
pF1KB8 SSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQATFQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQATFQA
              250       260       270       280       290       300

       270       280       290       300       310       320       
pF1KB8 HRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTLQQFNIKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTLQQFNIKL
              310       320       330       340       350       360

       330       340 
pF1KB8 RPPGAEKPSWLEEQ
       ::::::::::::::
NP_001 RPPGAEKPSWLEEQ
              370    

>>NP_001229785 (OMIM: 601638) arfaptin-2 isoform 4 [Homo  (256 aa)
 initn: 1506 init1: 1506 opt: 1506  Z-score: 1498.0  bits: 285.2 E(85289): 1.1e-76
Smith-Waterman score: 1506; 99.6% identity (100.0% similar) in 237 aa overlap (105-341:20-256)

           80        90       100       110       120       130    
pF1KB8 TTPSGPGDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGRGSRTVDLELELQIELLR
                                     .:::::::::::::::::::::::::::::
NP_001            MKPALCLVAMGALVMDSSPQCTKQLLSERFGRGSRTVDLELELQIELLR
                          10        20        30        40         

          140       150       160       170       180       190    
pF1KB8 ETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCK
      50        60        70        80        90       100         

          200       210       220       230       240       250    
pF1KB8 NGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGT
     110       120       130       140       150       160         

          260       270       280       290       300       310    
pF1KB8 RGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQK
     170       180       190       200       210       220         

          320       330       340 
pF1KB8 QLEQTLQQFNIKLRPPGAEKPSWLEEQ
       :::::::::::::::::::::::::::
NP_001 QLEQTLQQFNIKLRPPGAEKPSWLEEQ
     230       240       250      

>>NP_001020764 (OMIM: 605928) arfaptin-1 isoform 2 [Homo  (341 aa)
 initn: 1355 init1: 1227 opt: 1358  Z-score: 1350.2  bits: 258.2 E(85289): 1.8e-68
Smith-Waterman score: 1358; 59.9% identity (89.3% similar) in 337 aa overlap (8-341:7-341)

               10        20        30        40        50        60
pF1KB8 MTDGILGKAATMEIPIHGNGEARQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGD
              : .. :::. .:::. .  .. ....::.. . :: .:.::.:.: :. .. .
NP_001  MAQESPKNSAAEIPVTSNGEVDD-SREHSFNRDLKHSLPSGLGLSETQITSHGFDNTKE
                10        20         30        40        50        

               70        80           90       100       110       
pF1KB8 GLIPTGSGRHPSHSTTPSGP---GDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGR
       :.: .:. .  ... : :::   .::. .. : ::...:.::..::::::.:..::..::
NP_001 GVIEAGAFQGGQRTQTKSGPVILADEI-KNPAMEKLELVRKWSLNTYKCTRQIISEKLGR
       60        70        80         90       100       110       

       120       130       140       150       160       170       
pF1KB8 GSRTVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPE
       :::::::::: ::..::..:.:::..:.:...:...:.....::. ::::::::: :: :
NP_001 GSRTVDLELEAQIDILRDNKKKYENILKLAQTLSTQLFQMVHTQRQLGDAFADLSLKSLE
       120       130       140       150       160       170       

       180       190       200       210       220       230       
pF1KB8 LQEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDA
       :.:::::::.::::: :::::::::.:::..:.::::.::.:::::::::::.::.::::
NP_001 LHEEFGYNADTQKLLAKNGETLLGAINFFIASVNTLVNKTIEDTLMTVKQYESARIEYDA
       180       190       200       210       220       230       

       240       250       260       270       280       290       
pF1KB8 YRTDLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQ
       ::::::::.::::::.:  ..:..:  ::::..::.:.:.::..:::::::::.::.:.:
NP_001 YRTDLEELNLGPRDANTLPKIEQSQHLFQAHKEKYDKMRNDVSVKLKFLEENKVKVLHNQ
       240       250       260       270       280       290       

       300       310       320       330       340 
pF1KB8 LLLFHNAVSAYFAGNQKQLEQTLQQFNIKLRPPGAEKPSWLEEQ
       :.:::::..::::::::::::::.::.:::. ::.. :::::::
NP_001 LVLFHNAIAAYFAGNQKQLEQTLKQFHIKLKTPGVDAPSWLEEQ
       300       310       320       330       340 

>>NP_001274362 (OMIM: 605928) arfaptin-1 isoform 2 [Homo  (341 aa)
 initn: 1355 init1: 1227 opt: 1358  Z-score: 1350.2  bits: 258.2 E(85289): 1.8e-68
Smith-Waterman score: 1358; 59.9% identity (89.3% similar) in 337 aa overlap (8-341:7-341)

               10        20        30        40        50        60
pF1KB8 MTDGILGKAATMEIPIHGNGEARQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGD
              : .. :::. .:::. .  .. ....::.. . :: .:.::.:.: :. .. .
NP_001  MAQESPKNSAAEIPVTSNGEVDD-SREHSFNRDLKHSLPSGLGLSETQITSHGFDNTKE
                10        20         30        40        50        

               70        80           90       100       110       
pF1KB8 GLIPTGSGRHPSHSTTPSGP---GDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGR
       :.: .:. .  ... : :::   .::. .. : ::...:.::..::::::.:..::..::
NP_001 GVIEAGAFQGGQRTQTKSGPVILADEI-KNPAMEKLELVRKWSLNTYKCTRQIISEKLGR
       60        70        80         90       100       110       

       120       130       140       150       160       170       
pF1KB8 GSRTVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPE
       :::::::::: ::..::..:.:::..:.:...:...:.....::. ::::::::: :: :
NP_001 GSRTVDLELEAQIDILRDNKKKYENILKLAQTLSTQLFQMVHTQRQLGDAFADLSLKSLE
       120       130       140       150       160       170       

       180       190       200       210       220       230       
pF1KB8 LQEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDA
       :.:::::::.::::: :::::::::.:::..:.::::.::.:::::::::::.::.::::
NP_001 LHEEFGYNADTQKLLAKNGETLLGAINFFIASVNTLVNKTIEDTLMTVKQYESARIEYDA
       180       190       200       210       220       230       

       240       250       260       270       280       290       
pF1KB8 YRTDLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQ
       ::::::::.::::::.:  ..:..:  ::::..::.:.:.::..:::::::::.::.:.:
NP_001 YRTDLEELNLGPRDANTLPKIEQSQHLFQAHKEKYDKMRNDVSVKLKFLEENKVKVLHNQ
       240       250       260       270       280       290       

       300       310       320       330       340 
pF1KB8 LLLFHNAVSAYFAGNQKQLEQTLQQFNIKLRPPGAEKPSWLEEQ
       :.:::::..::::::::::::::.::.:::. ::.. :::::::
NP_001 LVLFHNAIAAYFAGNQKQLEQTLKQFHIKLKTPGVDAPSWLEEQ
       300       310       320       330       340 

>>NP_055262 (OMIM: 605928) arfaptin-1 isoform 2 [Homo sa  (341 aa)
 initn: 1355 init1: 1227 opt: 1358  Z-score: 1350.2  bits: 258.2 E(85289): 1.8e-68
Smith-Waterman score: 1358; 59.9% identity (89.3% similar) in 337 aa overlap (8-341:7-341)

               10        20        30        40        50        60
pF1KB8 MTDGILGKAATMEIPIHGNGEARQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGD
              : .. :::. .:::. .  .. ....::.. . :: .:.::.:.: :. .. .
NP_055  MAQESPKNSAAEIPVTSNGEVDD-SREHSFNRDLKHSLPSGLGLSETQITSHGFDNTKE
                10        20         30        40        50        

               70        80           90       100       110       
pF1KB8 GLIPTGSGRHPSHSTTPSGP---GDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGR
       :.: .:. .  ... : :::   .::. .. : ::...:.::..::::::.:..::..::
NP_055 GVIEAGAFQGGQRTQTKSGPVILADEI-KNPAMEKLELVRKWSLNTYKCTRQIISEKLGR
       60        70        80         90       100       110       

       120       130       140       150       160       170       
pF1KB8 GSRTVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPE
       :::::::::: ::..::..:.:::..:.:...:...:.....::. ::::::::: :: :
NP_055 GSRTVDLELEAQIDILRDNKKKYENILKLAQTLSTQLFQMVHTQRQLGDAFADLSLKSLE
       120       130       140       150       160       170       

       180       190       200       210       220       230       
pF1KB8 LQEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDA
       :.:::::::.::::: :::::::::.:::..:.::::.::.:::::::::::.::.::::
NP_055 LHEEFGYNADTQKLLAKNGETLLGAINFFIASVNTLVNKTIEDTLMTVKQYESARIEYDA
       180       190       200       210       220       230       

       240       250       260       270       280       290       
pF1KB8 YRTDLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQ
       ::::::::.::::::.:  ..:..:  ::::..::.:.:.::..:::::::::.::.:.:
NP_055 YRTDLEELNLGPRDANTLPKIEQSQHLFQAHKEKYDKMRNDVSVKLKFLEENKVKVLHNQ
       240       250       260       270       280       290       

       300       310       320       330       340 
pF1KB8 LLLFHNAVSAYFAGNQKQLEQTLQQFNIKLRPPGAEKPSWLEEQ
       :.:::::..::::::::::::::.::.:::. ::.. :::::::
NP_055 LVLFHNAIAAYFAGNQKQLEQTLKQFHIKLKTPGVDAPSWLEEQ
       300       310       320       330       340 

>>XP_011530173 (OMIM: 605928) PREDICTED: arfaptin-1 isof  (347 aa)
 initn: 1325 init1: 1227 opt: 1329  Z-score: 1321.5  bits: 252.9 E(85289): 7.2e-67
Smith-Waterman score: 1329; 62.6% identity (90.7% similar) in 313 aa overlap (32-341:36-347)

              10        20        30        40        50        60 
pF1KB8 TDGILGKAATMEIPIHGNGEARQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGDG
                                     :.::.. . :: .:.::.:.: :. .. .:
XP_011 PRFKKKKRITIFGEISWTPAIGSILVPVHQEKDLKHSLPSGLGLSETQITSHGFDNTKEG
          10        20        30        40        50        60     

              70        80           90       100       110        
pF1KB8 LIPTGSGRHPSHSTTPSGP---GDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGRG
       .: .:. .  ... : :::   .::. .. : ::...:.::..::::::.:..::..:::
XP_011 VIEAGAFQGGQRTQTKSGPVILADEI-KNPAMEKLELVRKWSLNTYKCTRQIISEKLGRG
          70        80        90        100       110       120    

      120       130       140       150       160       170        
pF1KB8 SRTVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPEL
       ::::::::: ::..::..:.:::..:.:...:...:.....::. ::::::::: :: ::
XP_011 SRTVDLELEAQIDILRDNKKKYENILKLAQTLSTQLFQMVHTQRQLGDAFADLSLKSLEL
          130       140       150       160       170       180    

      180       190       200       210       220       230        
pF1KB8 QEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAY
       .:::::::.::::: :::::::::.:::..:.::::.::.:::::::::::.::.:::::
XP_011 HEEFGYNADTQKLLAKNGETLLGAINFFIASVNTLVNKTIEDTLMTVKQYESARIEYDAY
          190       200       210       220       230       240    

      240       250       260       270       280       290        
pF1KB8 RTDLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQL
       :::::::.::::::.:  ..:..:  ::::..::.:.:.::..:::::::::.::.:.::
XP_011 RTDLEELNLGPRDANTLPKIEQSQHLFQAHKEKYDKMRNDVSVKLKFLEENKVKVLHNQL
          250       260       270       280       290       300    

      300       310       320       330       340 
pF1KB8 LLFHNAVSAYFAGNQKQLEQTLQQFNIKLRPPGAEKPSWLEEQ
       .:::::..::::::::::::::.::.:::. ::.. :::::::
XP_011 VLFHNAIAAYFAGNQKQLEQTLKQFHIKLKTPGVDAPSWLEEQ
          310       320       330       340       

>>XP_011530174 (OMIM: 605928) PREDICTED: arfaptin-1 isof  (296 aa)
 initn: 1227 init1: 1227 opt: 1261  Z-score: 1255.4  bits: 240.5 E(85289): 3.5e-63
Smith-Waterman score: 1261; 65.3% identity (91.0% similar) in 288 aa overlap (57-341:15-296)

         30        40        50        60        70        80      
pF1KB8 EDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGDGLIPTGSGRHPSHSTTPSGP---GDE
                                     :: : ..:.:. :    . : :::   .::
XP_011                 MSPSRVAASRLAQQGS-DLIVPAGGQR----TQTKSGPVILADE
                               10         20            30         

            90       100       110       120       130       140   
pF1KB8 VARGIAGEKFDIVKKWGINTYKCTKQLLSERFGRGSRTVDLELELQIELLRETKRKYESV
       . .. : ::...:.::..::::::.:..::..:::::::::::: ::..::..:.:::..
XP_011 I-KNPAMEKLELVRKWSLNTYKCTRQIISEKLGRGSRTVDLELEAQIDILRDNKKKYENI
      40         50        60        70        80        90        

           150       160       170       180       190       200   
pF1KB8 LQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLGAV
       :.:...:...:.....::. ::::::::: :: ::.:::::::.::::: :::::::::.
XP_011 LKLAQTLSTQLFQMVHTQRQLGDAFADLSLKSLELHEEFGYNADTQKLLAKNGETLLGAI
      100       110       120       130       140       150        

           210       220       230       240       250       260   
pF1KB8 NFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQA
       :::..:.::::.::.:::::::::::.::.::::::::::::.::::::.:  ..:..: 
XP_011 NFFIASVNTLVNKTIEDTLMTVKQYESARIEYDAYRTDLEELNLGPRDANTLPKIEQSQH
      160       170       180       190       200       210        

           270       280       290       300       310       320   
pF1KB8 TFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTLQQF
        ::::..::.:.:.::..:::::::::.::.:.::.:::::..::::::::::::::.::
XP_011 LFQAHKEKYDKMRNDVSVKLKFLEENKVKVLHNQLVLFHNAIAAYFAGNQKQLEQTLKQF
      220       230       240       250       260       270        

           330       340 
pF1KB8 NIKLRPPGAEKPSWLEEQ
       .:::. ::.. :::::::
XP_011 HIKLKTPGVDAPSWLEEQ
      280       290      




341 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:48:38 2016 done: Fri Nov  4 09:48:39 2016
 Total Scan time:  5.210 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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