Result of FASTA (ccds) for pF1KB8129
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8129, 341 aa
  1>>>pF1KB8129 341 - 341 aa - 341 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3126+/-0.000819; mu= 12.0391+/- 0.050
 mean_var=95.6929+/-18.712, 0's: 0 Z-trim(109.6): 15  B-trim: 10 in 1/52
 Lambda= 0.131110
 statistics sampled from 11019 (11030) to 11019 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.339), width:  16
 Scan time:  2.010

The best scores are:                                      opt bits E(32554)
CCDS7765.1 ARFIP2 gene_id:23647|Hs108|chr11        ( 341) 2216 429.1 2.5e-120
CCDS55740.1 ARFIP2 gene_id:23647|Hs108|chr11       ( 303) 1963 381.3 5.7e-106
CCDS73250.1 ARFIP2 gene_id:23647|Hs108|chr11       ( 374) 1794 349.3 2.9e-96
CCDS55739.1 ARFIP2 gene_id:23647|Hs108|chr11       ( 256) 1506 294.8 5.2e-80
CCDS3780.1 ARFIP1 gene_id:27236|Hs108|chr4         ( 341) 1358 266.8 1.8e-71
CCDS34080.1 ARFIP1 gene_id:27236|Hs108|chr4        ( 373) 1261 248.5 6.4e-66


>>CCDS7765.1 ARFIP2 gene_id:23647|Hs108|chr11             (341 aa)
 initn: 2216 init1: 2216 opt: 2216  Z-score: 2273.8  bits: 429.1 E(32554): 2.5e-120
Smith-Waterman score: 2216; 100.0% identity (100.0% similar) in 341 aa overlap (1-341:1-341)

               10        20        30        40        50        60
pF1KB8 MTDGILGKAATMEIPIHGNGEARQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MTDGILGKAATMEIPIHGNGEARQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GLIPTGSGRHPSHSTTPSGPGDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGRGSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 GLIPTGSGRHPSHSTTPSGPGDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGRGSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 TVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 TVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 EFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 EFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 DLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLL
              250       260       270       280       290       300

              310       320       330       340 
pF1KB8 FHNAVSAYFAGNQKQLEQTLQQFNIKLRPPGAEKPSWLEEQ
       :::::::::::::::::::::::::::::::::::::::::
CCDS77 FHNAVSAYFAGNQKQLEQTLQQFNIKLRPPGAEKPSWLEEQ
              310       320       330       340 

>>CCDS55740.1 ARFIP2 gene_id:23647|Hs108|chr11            (303 aa)
 initn: 1963 init1: 1963 opt: 1963  Z-score: 2016.0  bits: 381.3 E(32554): 5.7e-106
Smith-Waterman score: 1963; 100.0% identity (100.0% similar) in 303 aa overlap (39-341:1-303)

       10        20        30        40        50        60        
pF1KB8 AATMEIPIHGNGEARQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGDGLIPTGSG
                                     ::::::::::::::::::::::::::::::
CCDS55                               MVSGPNLNETSIVSGGYGGSGDGLIPTGSG
                                             10        20        30

       70        80        90       100       110       120        
pF1KB8 RHPSHSTTPSGPGDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGRGSRTVDLELEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RHPSHSTTPSGPGDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGRGSRTVDLELEL
               40        50        60        70        80        90

      130       140       150       160       170       180        
pF1KB8 QIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAET
              100       110       120       130       140       150

      190       200       210       220       230       240        
pF1KB8 QKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLG
              160       170       180       190       200       210

      250       260       270       280       290       300        
pF1KB8 PRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAY
              220       230       240       250       260       270

      310       320       330       340 
pF1KB8 FAGNQKQLEQTLQQFNIKLRPPGAEKPSWLEEQ
       :::::::::::::::::::::::::::::::::
CCDS55 FAGNQKQLEQTLQQFNIKLRPPGAEKPSWLEEQ
              280       290       300   

>>CCDS73250.1 ARFIP2 gene_id:23647|Hs108|chr11            (374 aa)
 initn: 1794 init1: 1794 opt: 1794  Z-score: 1841.8  bits: 349.3 E(32554): 2.9e-96
Smith-Waterman score: 2133; 91.2% identity (91.2% similar) in 373 aa overlap (2-341:2-374)

               10        20        30        40        50        60
pF1KB8 MTDGILGKAATMEIPIHGNGEARQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGD
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MTDGILGKAATMEIPIHGNGEARQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGD
               10        20        30        40        50        60

                                                70        80       
pF1KB8 GLIPTG---------------------------------SGRHPSHSTTPSGPGDEVARG
       ::::::                                 :::::::::::::::::::::
CCDS73 GLIPTGKSISCARREVWVGPQRCLVYLREAGVRELDPLGSGRHPSHSTTPSGPGDEVARG
               70        80        90       100       110       120

        90       100       110       120       130       140       
pF1KB8 IAGEKFDIVKKWGINTYKCTKQLLSERFGRGSRTVDLELELQIELLRETKRKYESVLQLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IAGEKFDIVKKWGINTYKCTKQLLSERFGRGSRTVDLELELQIELLRETKRKYESVLQLG
              130       140       150       160       170       180

       150       160       170       180       190       200       
pF1KB8 RALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLGAVNFFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLGAVNFFV
              190       200       210       220       230       240

       210       220       230       240       250       260       
pF1KB8 SSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQATFQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQATFQA
              250       260       270       280       290       300

       270       280       290       300       310       320       
pF1KB8 HRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTLQQFNIKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 HRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTLQQFNIKL
              310       320       330       340       350       360

       330       340 
pF1KB8 RPPGAEKPSWLEEQ
       ::::::::::::::
CCDS73 RPPGAEKPSWLEEQ
              370    

>>CCDS55739.1 ARFIP2 gene_id:23647|Hs108|chr11            (256 aa)
 initn: 1506 init1: 1506 opt: 1506  Z-score: 1549.9  bits: 294.8 E(32554): 5.2e-80
Smith-Waterman score: 1506; 99.6% identity (100.0% similar) in 237 aa overlap (105-341:20-256)

           80        90       100       110       120       130    
pF1KB8 TTPSGPGDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGRGSRTVDLELELQIELLR
                                     .:::::::::::::::::::::::::::::
CCDS55            MKPALCLVAMGALVMDSSPQCTKQLLSERFGRGSRTVDLELELQIELLR
                          10        20        30        40         

          140       150       160       170       180       190    
pF1KB8 ETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCK
      50        60        70        80        90       100         

          200       210       220       230       240       250    
pF1KB8 NGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGT
     110       120       130       140       150       160         

          260       270       280       290       300       310    
pF1KB8 RGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQK
     170       180       190       200       210       220         

          320       330       340 
pF1KB8 QLEQTLQQFNIKLRPPGAEKPSWLEEQ
       :::::::::::::::::::::::::::
CCDS55 QLEQTLQQFNIKLRPPGAEKPSWLEEQ
     230       240       250      

>>CCDS3780.1 ARFIP1 gene_id:27236|Hs108|chr4              (341 aa)
 initn: 1355 init1: 1227 opt: 1358  Z-score: 1396.7  bits: 266.8 E(32554): 1.8e-71
Smith-Waterman score: 1358; 59.9% identity (89.3% similar) in 337 aa overlap (8-341:7-341)

               10        20        30        40        50        60
pF1KB8 MTDGILGKAATMEIPIHGNGEARQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGD
              : .. :::. .:::. .  .. ....::.. . :: .:.::.:.: :. .. .
CCDS37  MAQESPKNSAAEIPVTSNGEVDD-SREHSFNRDLKHSLPSGLGLSETQITSHGFDNTKE
                10        20         30        40        50        

               70        80           90       100       110       
pF1KB8 GLIPTGSGRHPSHSTTPSGP---GDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGR
       :.: .:. .  ... : :::   .::. .. : ::...:.::..::::::.:..::..::
CCDS37 GVIEAGAFQGGQRTQTKSGPVILADEI-KNPAMEKLELVRKWSLNTYKCTRQIISEKLGR
       60        70        80         90       100       110       

       120       130       140       150       160       170       
pF1KB8 GSRTVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPE
       :::::::::: ::..::..:.:::..:.:...:...:.....::. ::::::::: :: :
CCDS37 GSRTVDLELEAQIDILRDNKKKYENILKLAQTLSTQLFQMVHTQRQLGDAFADLSLKSLE
       120       130       140       150       160       170       

       180       190       200       210       220       230       
pF1KB8 LQEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDA
       :.:::::::.::::: :::::::::.:::..:.::::.::.:::::::::::.::.::::
CCDS37 LHEEFGYNADTQKLLAKNGETLLGAINFFIASVNTLVNKTIEDTLMTVKQYESARIEYDA
       180       190       200       210       220       230       

       240       250       260       270       280       290       
pF1KB8 YRTDLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQ
       ::::::::.::::::.:  ..:..:  ::::..::.:.:.::..:::::::::.::.:.:
CCDS37 YRTDLEELNLGPRDANTLPKIEQSQHLFQAHKEKYDKMRNDVSVKLKFLEENKVKVLHNQ
       240       250       260       270       280       290       

       300       310       320       330       340 
pF1KB8 LLLFHNAVSAYFAGNQKQLEQTLQQFNIKLRPPGAEKPSWLEEQ
       :.:::::..::::::::::::::.::.:::. ::.. :::::::
CCDS37 LVLFHNAIAAYFAGNQKQLEQTLKQFHIKLKTPGVDAPSWLEEQ
       300       310       320       330       340 

>>CCDS34080.1 ARFIP1 gene_id:27236|Hs108|chr4             (373 aa)
 initn: 1337 init1: 1227 opt: 1261  Z-score: 1297.0  bits: 248.5 E(32554): 6.4e-66
Smith-Waterman score: 1293; 55.6% identity (81.6% similar) in 369 aa overlap (8-341:7-373)

               10        20        30        40        50        60
pF1KB8 MTDGILGKAATMEIPIHGNGEARQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGD
              : .. :::. .:::. .  .. ....::.. . :: .:.::.:.: :. .. .
CCDS34  MAQESPKNSAAEIPVTSNGEVDD-SREHSFNRDLKHSLPSGLGLSETQITSHGFDNTKE
                10        20         30        40        50        

                          70                             80        
pF1KB8 GLIPTG-----------SGRHPSH---------------------STTPSGP---GDEVA
       :.: .:           :   ::.                     . : :::   .::. 
CCDS34 GVIEAGAFQGSPAPPLPSVMSPSRVAASRLAQQGSDLIVPAGGQRTQTKSGPVILADEI-
       60        70        80        90       100       110        

          90       100       110       120       130       140     
pF1KB8 RGIAGEKFDIVKKWGINTYKCTKQLLSERFGRGSRTVDLELELQIELLRETKRKYESVLQ
       .. : ::...:.::..::::::.:..::..:::::::::::: ::..::..:.:::..:.
CCDS34 KNPAMEKLELVRKWSLNTYKCTRQIISEKLGRGSRTVDLELEAQIDILRDNKKKYENILK
       120       130       140       150       160       170       

         150       160       170       180       190       200     
pF1KB8 LGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLGAVNF
       :...:...:.....::. ::::::::: :: ::.:::::::.::::: :::::::::.::
CCDS34 LAQTLSTQLFQMVHTQRQLGDAFADLSLKSLELHEEFGYNADTQKLLAKNGETLLGAINF
       180       190       200       210       220       230       

         210       220       230       240       250       260     
pF1KB8 FVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQATF
       :..:.::::.::.:::::::::::.::.::::::::::::.::::::.:  ..:..:  :
CCDS34 FIASVNTLVNKTIEDTLMTVKQYESARIEYDAYRTDLEELNLGPRDANTLPKIEQSQHLF
       240       250       260       270       280       290       

         270       280       290       300       310       320     
pF1KB8 QAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTLQQFNI
       :::..::.:.:.::..:::::::::.::.:.::.:::::..::::::::::::::.::.:
CCDS34 QAHKEKYDKMRNDVSVKLKFLEENKVKVLHNQLVLFHNAIAAYFAGNQKQLEQTLKQFHI
       300       310       320       330       340       350       

         330       340 
pF1KB8 KLRPPGAEKPSWLEEQ
       ::. ::.. :::::::
CCDS34 KLKTPGVDAPSWLEEQ
       360       370   




341 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:48:38 2016 done: Fri Nov  4 09:48:38 2016
 Total Scan time:  2.010 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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