Result of FASTA (omim) for pF1KB8112
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8112, 152 aa
  1>>>pF1KB8112 152 - 152 aa - 152 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2393+/-0.000308; mu= 12.0381+/- 0.019
 mean_var=66.4452+/-13.214, 0's: 0 Z-trim(117.2): 127  B-trim: 74 in 1/55
 Lambda= 0.157341
 statistics sampled from 28930 (29074) to 28930 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.341), width:  16
 Scan time:  4.110

The best scores are:                                      opt bits E(85289)
NP_003339 (OMIM: 603679) ubiquitin-conjugating enz ( 152) 1019 239.5 1.6e-63
NP_054895 (OMIM: 610538,616435) ubiquitin-conjugat ( 197)  464 113.6 1.7e-25
NP_003330 (OMIM: 602962) ubiquitin-conjugating enz ( 147)  460 112.6 2.4e-25
NP_871621 (OMIM: 602963) ubiquitin-conjugating enz ( 148)  459 112.4 2.9e-25
NP_871617 (OMIM: 602963) ubiquitin-conjugating enz ( 147)  456 111.7 4.6e-25
NP_871616 (OMIM: 602963) ubiquitin-conjugating enz ( 147)  456 111.7 4.6e-25
NP_871618 (OMIM: 602963) ubiquitin-conjugating enz ( 147)  456 111.7 4.6e-25
NP_871615 (OMIM: 602963) ubiquitin-conjugating enz ( 147)  456 111.7 4.6e-25
NP_871620 (OMIM: 602963) ubiquitin-conjugating enz ( 147)  456 111.7 4.6e-25
NP_003331 (OMIM: 602963) ubiquitin-conjugating enz ( 147)  456 111.7 4.6e-25
NP_871619 (OMIM: 602963) ubiquitin-conjugating enz ( 147)  456 111.7 4.6e-25
NP_003329 (OMIM: 602961) ubiquitin-conjugating enz ( 147)  453 111.0 7.4e-25
NP_871622 (OMIM: 602963) ubiquitin-conjugating enz ( 149)  444 109.0 3.1e-24
NP_005330 (OMIM: 602846) ubiquitin-conjugating enz ( 200)  444 109.0 3.9e-24
XP_016865309 (OMIM: 602962) PREDICTED: ubiquitin-c ( 173)  443 108.8 4.1e-24
NP_862821 (OMIM: 602962) ubiquitin-conjugating enz ( 118)  432 106.2 1.7e-23
NP_001287724 (OMIM: 602963) ubiquitin-conjugating  ( 118)  427 105.0 3.7e-23
XP_016864073 (OMIM: 602963) PREDICTED: ubiquitin-c ( 118)  427 105.0 3.7e-23
NP_003332 (OMIM: 602916) ubiquitin-conjugating enz ( 193)  429 105.6   4e-23
NP_001189405 (OMIM: 602916) ubiquitin-conjugating  ( 160)  426 104.9 5.5e-23
NP_689866 (OMIM: 602163) ubiquitin-conjugating enz ( 201)  427 105.2 5.7e-23
XP_005265489 (OMIM: 602163) PREDICTED: ubiquitin-c ( 201)  427 105.2 5.7e-23
NP_003327 (OMIM: 300860,312180) ubiquitin-conjugat ( 152)  425 104.6 6.2e-23
NP_001265484 (OMIM: 604151) ubiquitin-conjugating  ( 207)  426 105.0 6.8e-23
NP_001265483 (OMIM: 604151) ubiquitin-conjugating  ( 207)  426 105.0 6.8e-23
NP_006348 (OMIM: 604151) ubiquitin-conjugating enz ( 207)  426 105.0 6.8e-23
NP_872619 (OMIM: 604151) ubiquitin-conjugating enz ( 207)  426 105.0 6.8e-23
XP_005246301 (OMIM: 604151) PREDICTED: ubiquitin-c ( 207)  426 105.0 6.8e-23
NP_003328 (OMIM: 179095) ubiquitin-conjugating enz ( 152)  423 104.2 8.5e-23
XP_016872098 (OMIM: 602961) PREDICTED: ubiquitin-c ( 110)  417 102.7 1.7e-22
NP_001297255 (OMIM: 610538,616435) ubiquitin-conju ( 167)  419 103.3 1.7e-22
NP_001191809 (OMIM: 602961) ubiquitin-conjugating  ( 109)  400 98.9 2.4e-21
NP_001104582 (OMIM: 602846) ubiquitin-conjugating  ( 157)  397 98.3 5.2e-21
NP_872607 (OMIM: 602916) ubiquitin-conjugating enz ( 176)  393 97.4 1.1e-20
NP_055316 (OMIM: 610309) ubiquitin-conjugating enz ( 222)  372 92.7 3.5e-19
NP_008950 (OMIM: 605574) ubiquitin-conjugating enz ( 179)  366 91.3 7.6e-19
NP_001269090 (OMIM: 300860,312180) ubiquitin-conju ( 119)  354 88.5 3.6e-18
NP_861517 (OMIM: 605574) ubiquitin-conjugating enz ( 140)  352 88.1 5.6e-18
XP_005265490 (OMIM: 602163) PREDICTED: ubiquitin-c ( 189)  342 85.9 3.5e-17
XP_005265488 (OMIM: 602916) PREDICTED: ubiquitin-c ( 167)  334 84.0 1.1e-16
NP_003338 (OMIM: 603721) ubiquitin-conjugating enz ( 154)  333 83.8 1.2e-16
NP_861516 (OMIM: 605574) ubiquitin-conjugating enz ( 150)  326 82.2 3.6e-16
NP_001243284 (OMIM: 603721) ubiquitin-conjugating  ( 212)  320 80.9 1.2e-15
XP_011525054 (OMIM: 610309) PREDICTED: ubiquitin-c ( 162)  315 79.7 2.1e-15
NP_001104583 (OMIM: 602846) ubiquitin-conjugating  ( 149)  307 77.9 7.1e-15
NP_001243285 (OMIM: 603721) ubiquitin-conjugating  ( 122)  303 76.9 1.1e-14
NP_004214 (OMIM: 603890) ubiquitin/ISG15-conjugati ( 153)  297 75.6 3.5e-14
NP_919236 (OMIM: 601661) SUMO-conjugating enzyme U ( 158)  295 75.1 4.9e-14
XP_016879129 (OMIM: 601661) PREDICTED: SUMO-conjug ( 158)  295 75.1 4.9e-14
NP_003336 (OMIM: 601661) SUMO-conjugating enzyme U ( 158)  295 75.1 4.9e-14


>>NP_003339 (OMIM: 603679) ubiquitin-conjugating enzyme   (152 aa)
 initn: 1019 init1: 1019 opt: 1019  Z-score: 1261.4  bits: 239.5 E(85289): 1.6e-63
Smith-Waterman score: 1019; 100.0% identity (100.0% similar) in 152 aa overlap (1-152:1-152)

               10        20        30        40        50        60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
               70        80        90       100       110       120

              130       140       150  
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
       ::::::::::::::::::::::::::::::::
NP_003 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
              130       140       150  

>>NP_054895 (OMIM: 610538,616435) ubiquitin-conjugating   (197 aa)
 initn: 437 init1: 294 opt: 464  Z-score: 578.9  bits: 113.6 E(85289): 1.7e-25
Smith-Waterman score: 464; 45.9% identity (71.9% similar) in 146 aa overlap (7-148:6-151)

               10        20        30        40        50        60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
             :. .: . : .:: :::    :...   ... : :  ..:.: :.::::...::
NP_054  MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPE
                10        20        30        40        50         

               70        80        90           100       110      
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILK----DKWSPALQIRTVLLSIQALLSAPN
       .::.  :..::.: :::::.:. ::::::.::      : :.:.: ::: ::: :.: ::
NP_054 RYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPN
      60        70        80        90       100       110         

        120       130       140       150                          
pF1KB8 PDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI                        
       :::::  :.. ..: :.   ...:: ::. .:                            
NP_054 PDDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEMLDNLPEAGDSRVHNSTQ
     120       130       140       150       160       170         

NP_054 KRKASQLVGIEKKFHPDV
     180       190       

>>NP_003330 (OMIM: 602962) ubiquitin-conjugating enzyme   (147 aa)
 initn: 460 init1: 460 opt: 460  Z-score: 575.9  bits: 112.6 E(85289): 2.4e-25
Smith-Waterman score: 460; 47.2% identity (72.9% similar) in 144 aa overlap (6-149:4-147)

               10        20        30        40        50        60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
            .:: :: . :  .:    .: :  ..  .....: ::.:::..::.: : . .: 
NP_003   MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
       .::.  ::: : :.:::::... : ::::::...::::: :  ::::: .::  ::::::
NP_003 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
       60        70        80        90       100       110        

              130       140       150  
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
       :. ..:. .::.. .  . :: ::. :::   
NP_003 LVPEIARIYKTDREKYNRIAREWTQKYAM   
      120       130       140          

>>NP_871621 (OMIM: 602963) ubiquitin-conjugating enzyme   (148 aa)
 initn: 459 init1: 459 opt: 459  Z-score: 574.6  bits: 112.4 E(85289): 2.9e-25
Smith-Waterman score: 459; 47.2% identity (72.9% similar) in 144 aa overlap (6-149:4-147)

               10        20        30        40        50        60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
            .:: :: . :  .:    .: :  ..  .....: ::.:::..::.: : . .: 
NP_871   MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
       .::.  ::: : :.:::::... : ::::::...::::: :  ::::: .::  ::::::
NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
       60        70        80        90       100       110        

              130       140       150  
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
       :. ..:. .::.. .  . :: ::. :::   
NP_871 LVPEIARIYKTDRDKYNRLAREWTEKYAML  
      120       130       140          

>>NP_871617 (OMIM: 602963) ubiquitin-conjugating enzyme   (147 aa)
 initn: 456 init1: 456 opt: 456  Z-score: 571.0  bits: 111.7 E(85289): 4.6e-25
Smith-Waterman score: 456; 46.5% identity (72.9% similar) in 144 aa overlap (6-149:4-147)

               10        20        30        40        50        60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
            .:: :: . :  .:    .: :  ..  .....: ::.:::..::.: : . .: 
NP_871   MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
       .::.  ::: : :.:::::... : ::::::...::::: :  ::::: .::  ::::::
NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
       60        70        80        90       100       110        

              130       140       150  
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
       :. ..:. .::.. .  . .: ::. :::   
NP_871 LVPEIARIYKTDRDKYNRISREWTQKYAM   
      120       130       140          

>>NP_871616 (OMIM: 602963) ubiquitin-conjugating enzyme   (147 aa)
 initn: 456 init1: 456 opt: 456  Z-score: 571.0  bits: 111.7 E(85289): 4.6e-25
Smith-Waterman score: 456; 46.5% identity (72.9% similar) in 144 aa overlap (6-149:4-147)

               10        20        30        40        50        60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
            .:: :: . :  .:    .: :  ..  .....: ::.:::..::.: : . .: 
NP_871   MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
       .::.  ::: : :.:::::... : ::::::...::::: :  ::::: .::  ::::::
NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
       60        70        80        90       100       110        

              130       140       150  
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
       :. ..:. .::.. .  . .: ::. :::   
NP_871 LVPEIARIYKTDRDKYNRISREWTQKYAM   
      120       130       140          

>>NP_871618 (OMIM: 602963) ubiquitin-conjugating enzyme   (147 aa)
 initn: 456 init1: 456 opt: 456  Z-score: 571.0  bits: 111.7 E(85289): 4.6e-25
Smith-Waterman score: 456; 46.5% identity (72.9% similar) in 144 aa overlap (6-149:4-147)

               10        20        30        40        50        60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
            .:: :: . :  .:    .: :  ..  .....: ::.:::..::.: : . .: 
NP_871   MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
       .::.  ::: : :.:::::... : ::::::...::::: :  ::::: .::  ::::::
NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
       60        70        80        90       100       110        

              130       140       150  
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
       :. ..:. .::.. .  . .: ::. :::   
NP_871 LVPEIARIYKTDRDKYNRISREWTQKYAM   
      120       130       140          

>>NP_871615 (OMIM: 602963) ubiquitin-conjugating enzyme   (147 aa)
 initn: 456 init1: 456 opt: 456  Z-score: 571.0  bits: 111.7 E(85289): 4.6e-25
Smith-Waterman score: 456; 46.5% identity (72.9% similar) in 144 aa overlap (6-149:4-147)

               10        20        30        40        50        60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
            .:: :: . :  .:    .: :  ..  .....: ::.:::..::.: : . .: 
NP_871   MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
       .::.  ::: : :.:::::... : ::::::...::::: :  ::::: .::  ::::::
NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
       60        70        80        90       100       110        

              130       140       150  
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
       :. ..:. .::.. .  . .: ::. :::   
NP_871 LVPEIARIYKTDRDKYNRISREWTQKYAM   
      120       130       140          

>>NP_871620 (OMIM: 602963) ubiquitin-conjugating enzyme   (147 aa)
 initn: 456 init1: 456 opt: 456  Z-score: 571.0  bits: 111.7 E(85289): 4.6e-25
Smith-Waterman score: 456; 46.5% identity (72.9% similar) in 144 aa overlap (6-149:4-147)

               10        20        30        40        50        60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
            .:: :: . :  .:    .: :  ..  .....: ::.:::..::.: : . .: 
NP_871   MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
       .::.  ::: : :.:::::... : ::::::...::::: :  ::::: .::  ::::::
NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
       60        70        80        90       100       110        

              130       140       150  
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
       :. ..:. .::.. .  . .: ::. :::   
NP_871 LVPEIARIYKTDRDKYNRISREWTQKYAM   
      120       130       140          

>>NP_003331 (OMIM: 602963) ubiquitin-conjugating enzyme   (147 aa)
 initn: 456 init1: 456 opt: 456  Z-score: 571.0  bits: 111.7 E(85289): 4.6e-25
Smith-Waterman score: 456; 46.5% identity (72.9% similar) in 144 aa overlap (6-149:4-147)

               10        20        30        40        50        60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
            .:: :: . :  .:    .: :  ..  .....: ::.:::..::.: : . .: 
NP_003   MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
       .::.  ::: : :.:::::... : ::::::...::::: :  ::::: .::  ::::::
NP_003 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
       60        70        80        90       100       110        

              130       140       150  
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
       :. ..:. .::.. .  . .: ::. :::   
NP_003 LVPEIARIYKTDRDKYNRISREWTQKYAM   
      120       130       140          




152 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:37:54 2016 done: Fri Nov  4 09:37:54 2016
 Total Scan time:  4.110 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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