Result of FASTA (ccds) for pF1KB8107
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8107, 222 aa
  1>>>pF1KB8107 222 - 222 aa - 222 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8042+/-0.000727; mu= 8.7929+/- 0.044
 mean_var=110.5962+/-21.965, 0's: 0 Z-trim(112.4): 13  B-trim: 0 in 0/52
 Lambda= 0.121956
 statistics sampled from 13149 (13162) to 13149 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.404), width:  16
 Scan time:  1.980

The best scores are:                                      opt bits E(32554)
CCDS33236.1 CHMP3 gene_id:51652|Hs108|chr2         ( 222) 1385 253.4 8.4e-68
CCDS56128.1 CHMP3 gene_id:100526767|Hs108|chr2     ( 251) 1282 235.3 2.7e-62
CCDS42707.1 CHMP3 gene_id:51652|Hs108|chr2         ( 156)  957 178.0 2.9e-45
CCDS54375.1 CHMP3 gene_id:51652|Hs108|chr2         ( 182)  688 130.7 5.9e-31
CCDS2918.1 CHMP2B gene_id:25978|Hs108|chr3         ( 213)  311 64.4 6.2e-11
CCDS12986.1 CHMP2A gene_id:27243|Hs108|chr19       ( 222)  308 63.9 9.3e-11


>>CCDS33236.1 CHMP3 gene_id:51652|Hs108|chr2              (222 aa)
 initn: 1385 init1: 1385 opt: 1385  Z-score: 1330.7  bits: 253.4 E(32554): 8.4e-68
Smith-Waterman score: 1385; 100.0% identity (100.0% similar) in 222 aa overlap (1-222:1-222)

               10        20        30        40        50        60
pF1KB8 MGLFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MGLFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 IVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKA
              130       140       150       160       170       180

              190       200       210       220  
pF1KB8 PSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLRS
       ::::::::::::::::::::::::::::::::::::::::::
CCDS33 PSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLRS
              190       200       210       220  

>>CCDS56128.1 CHMP3 gene_id:100526767|Hs108|chr2          (251 aa)
 initn: 1282 init1: 1282 opt: 1282  Z-score: 1232.0  bits: 235.3 E(32554): 2.7e-62
Smith-Waterman score: 1282; 100.0% identity (100.0% similar) in 207 aa overlap (16-222:45-251)

                              10        20        30        40     
pF1KB8                MGLFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVK
                                     ::::::::::::::::::::::::::::::
CCDS56 SESVSSTNFSGEMHFYELVEDTKDGIWLVQVNEWSLKIRKEMRVVDRQIRDIQREEEKVK
           20        30        40        50        60        70    

          50        60        70        80        90       100     
pF1KB8 RSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQ
           80        90       100       110       120       130    

         110       120       130       140       150       160     
pF1KB8 KSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEI
          140       150       160       170       180       190    

         170       180       190       200       210       220  
pF1KB8 DRILFEITAGALGKAPSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLRS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DRILFEITAGALGKAPSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLRS
          200       210       220       230       240       250 

>>CCDS42707.1 CHMP3 gene_id:51652|Hs108|chr2              (156 aa)
 initn: 957 init1: 957 opt: 957  Z-score: 926.0  bits: 178.0 E(32554): 2.9e-45
Smith-Waterman score: 957; 100.0% identity (100.0% similar) in 156 aa overlap (67-222:1-156)

         40        50        60        70        80        90      
pF1KB8 IQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLA
                                     ::::::::::::::::::::::::::::::
CCDS42                               MIRSRKAVSKLYASKAHMNSVLMGMKNQLA
                                             10        20        30

        100       110       120       130       140       150      
pF1KB8 VLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEE
               40        50        60        70        80        90

        160       170       180       190       200       210      
pF1KB8 MEEEAEMEIDRILFEITAGALGKAPSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MEEEAEMEIDRILFEITAGALGKAPSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSR
              100       110       120       130       140       150

        220  
pF1KB8 LATLRS
       ::::::
CCDS42 LATLRS
             

>>CCDS54375.1 CHMP3 gene_id:51652|Hs108|chr2              (182 aa)
 initn: 688 init1: 688 opt: 688  Z-score: 669.2  bits: 130.7 E(32554): 5.9e-31
Smith-Waterman score: 1057; 82.0% identity (82.0% similar) in 222 aa overlap (1-222:1-182)

               10        20        30        40        50        60
pF1KB8 MGLFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MGLFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 IVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKI
       :::::::::::                                        :::::::::
CCDS54 IVLAKEMIRSR----------------------------------------KAMQSLVKI
               70                                                80

              130       140       150       160       170       180
pF1KB8 PEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKA
               90       100       110       120       130       140

              190       200       210       220  
pF1KB8 PSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLRS
       ::::::::::::::::::::::::::::::::::::::::::
CCDS54 PSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLRS
              150       160       170       180  

>>CCDS2918.1 CHMP2B gene_id:25978|Hs108|chr3              (213 aa)
 initn: 315 init1: 241 opt: 311  Z-score: 309.7  bits: 64.4 E(32554): 6.2e-11
Smith-Waterman score: 311; 27.5% identity (69.1% similar) in 207 aa overlap (8-210:6-210)

               10        20        30        40        50        60
pF1KB8 MGLFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVC
              ..:   ....: . ..:  .:.. :.   ....:....  .:  :: :.:..:
CCDS29   MASLFKKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEAC
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB8 IVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKI
        ::::.... ::  .. .: .....:.    : . . ...::... ....:.:... .  
CCDS29 KVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDP
       60        70        80        90       100       110        

              130       140           150       160       170      
pF1KB8 PEIQATMRELSKEMMKAGIIEEMLEDT----FESMDDQEEMEEEAEMEIDRILFEITAGA
        .   ::....:: ::  . :::..::    :.. ::.:: .. ... .:.: .::. : 
CCDS29 QKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEIS-GK
      120       130       140       150       160       170        

        180       190       200       210       220  
pF1KB8 LGKAPSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLRS
       ..:::: .. .::      :  ..:. :.. .::            
CCDS29 MAKAPS-AARSLPSASTSKATISDEEIERQLKALGVD         
       180        190       200       210            

>>CCDS12986.1 CHMP2A gene_id:27243|Hs108|chr19            (222 aa)
 initn: 288 init1: 288 opt: 308  Z-score: 306.6  bits: 63.9 E(32554): 9.3e-11
Smith-Waterman score: 308; 27.4% identity (63.0% similar) in 219 aa overlap (3-220:4-212)

                10        20        30        40        50         
pF1KB8  MGLFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDV
          :::.  .: :.::. . .  . . :: .::. . .. .:.:.  ..:  ::.:: :.
CCDS12 MDLLFGR--RKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDA
                 10        20        30        40        50        

      60        70        80        90       100       110         
pF1KB8 CIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVK
         ..::...:.:. : :.   .:....: . ...  .   .: ...  :..: .:.  .:
CCDS12 VRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLK
       60        70        80        90       100       110        

     120       130       140       150       160       170         
pF1KB8 IPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGK
       .:.::  : :. ..     . :::..:....   .:: :::..  ....: :     :: 
CCDS12 LPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDE-----LGL
      120       130       140       150       160       170        

     180       190        200       210       220          
pF1KB8 APSKVTDALPE-PEPPGAMAASEDEEEEEEALEAMQSRLATLRS        
       .   .:: : . :   :.....   .. : :  :. .  : :          
CCDS12 S---LTDELSNLPSTGGSLSVAAGGKKAEAAASALADADADLEERLKNLRRD
              180       190       200       210       220  




222 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:33:09 2016 done: Fri Nov  4 09:33:09 2016
 Total Scan time:  1.980 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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