GENSCAN 1.0	Date run:  4-Nov-116	Time: 09:29:57

Sequence gi568815597r:20383652_20585379 : 201728 bp : 48.45% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 PlyA -    769    764    6                              -1.95
 1.02 Term -   3330   3259   72  0  0  137   36    65 0.617   4.11
 1.01 Init -   6137   6027  111  2  0   75   78    93 0.439   5.23
 1.00 Prom -  12308  12269   40                              -3.16

 2.00 Prom +  12760  12799   40                              -7.26
 2.01 Init +  14494  14650  157  0  1   78   56   165 0.875  12.38
 2.02 Intr +  16725  16858  134  1  2   79   -4   116 0.549   1.86
 2.03 Intr +  17647  17707   61  0  1   58  110    21 0.385  -0.39
 2.04 Intr +  19913  20111  199  0  1   80   76    81 0.383   4.51
 2.05 Intr +  22177  22246   70  1  1   59   51    58 0.400  -1.62
 2.06 Term +  23022  23144  123  2  0  115   49    35 0.525   0.68
 2.07 PlyA +  23492  23497    6                               1.05

 3.00 Prom +  23873  23912   40                              -1.86
 3.01 Init +  27892  28031  140  0  2   45   49   153 0.960   4.71
 3.02 Intr +  29518  29636  119  1  2   59   70    75 0.628   2.91
 3.03 Intr +  29654  29736   83  0  2   20  110    35 0.590  -1.74
 3.04 Intr +  30005  30136  132  1  0  110   55    62 0.761   5.94
 3.05 Intr +  48648  48782  135  2  0    1   94    86 0.010   1.26
 3.06 Intr +  58562  58618   57  1  0   68  110     9 0.004   0.18
 3.07 Term +  79767  80183  417  2  0  -43   38   996 0.983  76.78
 3.08 PlyA +  81090  81095    6                               1.05

 4.03 PlyA -  81972  81967    6                               1.05
 4.02 Term -  82112  82041   72  2  0  112   55    33 0.738   0.31
 4.01 Init -  83245  83186   60  1  0   98   72    56 0.579   6.40
 4.00 Prom -  96076  96037   40                              -3.96

 5.08 PlyA -  96554  96549    6                               1.05
 5.07 Term - 100068  99998   71  1  2  115   35   147 0.999  10.20
 5.06 Intr - 101881 101563  319  1  1   44   84   530 0.525  43.73
 5.05 Intr - 115211 115101  111  2  0   49   78    74 0.022   3.08
 5.04 Intr - 117768 117063  706  2  1  101   26  1031 0.031  89.66
 5.03 Intr - 118538 118418  121  0  1   24   76   145 0.907   6.45
 5.02 Intr - 119658 119571   88  0  1   98   95    34 0.998   4.64
 5.01 Init - 124373 124254  120  2  0  108   86   232 0.839  23.19
 5.00 Prom - 133775 133736   40                              -5.96

 6.00 Prom + 133923 133962   40                              -8.96
 6.01 Init + 137469 137475    7  2  1   61  114    10 0.226   1.37
 6.02 Intr + 139091 139159   69  0  0   62   58    80 0.108   1.55
 6.03 Term + 142684 143093  410  2  2  -70   42   443 0.096  19.28
 6.04 PlyA + 143166 143171    6                              -0.45

 7.02 PlyA - 143275 143270    6                               1.05
 7.01 Sngl - 150637 150407  231  1  0   82   37   165 0.361   5.91
 7.00 Prom - 161605 161566   40                              -3.56

 8.00 Prom + 165739 165778   40                              -4.06
 8.01 Init + 165827 165943  117  1  0   66   70    41 0.366   0.30
 8.02 Intr + 169230 169281   52  2  1   81  105    47 0.291   4.18
 8.03 Term + 169303 170312 1010  2  2   75   54  1845 0.527 172.07
 8.04 PlyA + 171335 171340    6                               1.05

 9.03 PlyA - 171935 171930    6                               1.05
 9.02 Term - 180293 180070  224  0  2   71   38    85 0.014  -1.12
 9.01 Init - 193200 193143   58  0  1   65   94    55 0.442   5.27

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 117768 117039  730  2  1  101   38  1058 0.965  95.05


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:20383652_20585379|GENSCAN_predicted_peptide_1|60_aa
MVSACRKLSTALGPAVRAAALVRWQSLSAAAASTASAVARCQSGTSRVAMGTTERLRKLP

>gi568815597r:20383652_20585379|GENSCAN_predicted_CDS_1|183_bp
atggtgagtgcttgcagaaagctgtcaacagctcttgggccggctgtgcgcgctgcagct
ctggtacggtggcagtcactcagtgctgccgcggcctccactgcttcggcggtggcccgc
tgccagtctggtaccagccgggttgccatgggaaccactgagcggcttaggaagctgcca
tag

>gi568815597r:20383652_20585379|GENSCAN_predicted_peptide_2|247_aa
MKGENIAQFLAMAGTSDMQNLQQRGRYLGKKKRDPRNDNEDGNDDEDDVGDEASDLPTVP
TSFAQAAWGSQGLKDTDPTPAVSIPLAAVGTVPSDTVINRDTGAQRGTVSCSSKLAAVGC
LDQDAQMRPVTSIPPEKPGRWTPSLLMEKLKPDRPRSLPKSQGKECQRENWTKSCPSLDL
SLPSTWMHMDLHFYTATCVQVYKPMHTEDICASSYQQLYKTTNPSSKEENTPWNEKPPPA
RLALKSF

>gi568815597r:20383652_20585379|GENSCAN_predicted_CDS_2|744_bp
atgaaaggagagaacatagcccagtttctggcaatggctggtacctcagacatgcagaat
ctccagcagaggggcaggtatctgggaaagaaaaagagagaccccaggaatgataatgag
gatggcaatgatgatgaagatgatgttggtgatgaagcctcagacctacccacggttccc
acaagctttgctcaagctgcctggggctcccagggtctgaaggacacagatcccacccca
gctgtgagcatccccctggctgccgtgggcacagtgccttctgacacagtgataaacagg
gatactggggcccagagagggactgtgtcctgctcaagcaagctggcagcagttggatgt
cttgaccaggatgcacagatgagacctgtgacatccatccccccagagaagccaggcagg
tggacaccatcattgttgatggagaagctgaagccagacagacctagaagtttgcccaag
tcccagggcaaggagtgccagcgtgagaactggaccaagtcatgtccctctctggacctc
agtctccccagcacgtggatgcacatggatctgcatttttacacagctacatgtgtgcag
gtgtacaagcccatgcacacagaggatatctgtgcctcaagctatcagcagttatacaag
accacaaacccaagtagcaaggaggaaaacacaccctggaatgagaagccccctcctgct
cgtttagcacttaagagtttttga

>gi568815597r:20383652_20585379|GENSCAN_predicted_peptide_3|360_aa
MWLSWEASPSLPGAGGASCLQVDPSPIIPDDTVTQQLLNKGTISPDGGKTKIQCVQGLSK
VQLRAGGELGPVPRSQDAARAPSVTPWQASLAFDFPSHLASPALDANRTLPCTQPLSDAA
ALAGVTAHTMTRGLLHSHLEASDPGIKDPEGILGKEGNLPGETDTAVPENSFDKQGQQKR
GLVKALVLLSPSLEMPRRYFFLQVSKCIFPNLHKQVLVTIFQLLIFIIITTITTTIIIIT
TTNIITTITIIIITTTITTIITNIIITTTITISTNNSIITNIIITTITIISITISVTIIT
TIAIITTTTTTIIIIITIIITITTTTTIITTTITSTTTIIIIIIIIILFSPKTTLESGCC

>gi568815597r:20383652_20585379|GENSCAN_predicted_CDS_3|1083_bp
atgtggctgagttgggaagcctcaccctccctgcctggggctgggggagcttcctgtctg
caagttgacccttccccaatcatccctgatgacacagtcactcagcaactcctgaacaag
ggcaccatctccccagatggaggaaaaacgaagatccaatgtgtccaaggattgtccaag
gtccaactaagagctggtggcgagctgggaccagtgcccaggtctcaggatgctgcccgg
gcaccatctgtcactccttggcaggcctccctggcctttgactttcccagccacttggcc
agccctgctcttgatgccaaccgcaccctaccctgcacacagcctctctctgatgcagcc
gccctggccggggtcacagctcacaccatgacacggggcctcctgcacagccatcttgag
gcatctgacccaggaatcaaagacccagaagggattctggggaaagagggaaacctccca
ggggagactgatactgctgtccctgagaactcatttgacaagcaagggcagcaaaagcgt
ggcctagtaaaggccttggtgctcctgtccccttctctggaaatgcctaggagatacttc
ttcctccaggtctccaaatgcatctttcccaatcttcacaagcaagtccttgtaaccatt
ttccagctgttaatcttcatcatcattaccaccatcaccaccaccatcatcatcatcacc
accaccaacatcatcaccaccatcaccatcatcatcattaccaccaccatcaccaccatc
atcaccaacatcatcatcaccaccaccatcaccataagcaccaacaacagcatcatcacc
aacatcatcatcaccaccatcaccatcatcagcatcaccatttctgtcaccatcataacc
accatcgccataatcaccaccaccaccactaccataatcatcataattaccatcattatc
accatcaccaccaccaccaccattatcaccaccaccatcacaagcaccaccaccatcatc
atcatcatcatcatcatcatcttgtttagccccaaaaccaccttggaaagtggatgctgt
taa

>gi568815597r:20383652_20585379|GENSCAN_predicted_peptide_4|43_aa
MRTNWNPCLSLVTSNVDAAGTLGCPLLLGTCQPSAPKAPVPLR

>gi568815597r:20383652_20585379|GENSCAN_predicted_CDS_4|132_bp
atgaggacaaactggaacccgtgtctgtctctggtgacctccaacgtcgatgccgctggg
acccttggctgtcccctgcttttgggcacctgccagccgtcagcacctaaagctcctgtg
cctttaagatga

>gi568815597r:20383652_20585379|GENSCAN_predicted_peptide_5|511_aa
MESGGRPSLCQFILLGTTSVVTAALYSVYRQKARVSQELKGAKKVHLGEDLKSILSEAPG
KCVPYAVIEGAVRSVKETLNSQFVENCKGVIQRLTLQEHKMVWNRTTHLWNDCSKIIHQR
TNTVPFDLVPHEDGVDVAVRVLKPLDSVDLGLETVYEKFHPSIQSFTDVIGHYISGERPK
GIQETEEMLKVGATLTGVGELVLDNNSVRLQPPKQGMQYYLSSQDFDSLLQRQESSVRLW
KVLALVFGFATCATLFFILRKQYLQRQERLRLKQMQEEFQEHEAQLLSRAKPEDRESLKS
ACVVCLSSFKSCVFLECGHVCSCTECYRALPEPKKCPICRQAITRCGASEFLSANRNTHK
RCVPQVHRGELVATLEEQAKVGRRPPASRRRHRRSSPRAVPGRPPPAPAPLTLSAAGGDA
GGGGAAAEPPDATMSEVLPYGDEKLSPYGDGGDVGQIFSCRLQDTNNFFGAGQNKRPPKL
GQIGRSKRVVIEDDRIDDVLKNMTDKAPPGV

>gi568815597r:20383652_20585379|GENSCAN_predicted_CDS_5|1536_bp
atggagagcggagggcggccctcgctgtgccagttcatcctcctgggcaccacctctgtg
gtcaccgccgccctgtactccgtgtaccggcagaaggcccgggtctcccaagagctcaag
ggagctaaaaaagttcatttgggtgaagatttaaagagtattctttcagaagctccagga
aaatgcgtgccttatgctgttatagaaggagctgtgcggtctgttaaagaaacgcttaac
agccagtttgtggaaaactgcaagggggtaattcagcggctgacacttcaggagcacaag
atggtgtggaatcgaaccacccacctttggaatgattgctcaaagatcattcatcagagg
accaacacagtgccctttgacctggtgccccacgaggatggcgtggatgtggctgtgcga
gtgctgaagcccctggactcagtggatctgggtctagagactgtgtatgagaagttccac
ccctcgattcagtccttcaccgatgtcatcggccactacatcagcggtgagcggcccaaa
ggcatccaagagaccgaggagatgctgaaggtgggggccaccctcacaggggttggcgaa
ctggtcctggacaacaactctgtccgcctgcagccgcccaaacaaggcatgcagtactat
ctaagcagccaggacttcgacagcctgctgcagaggcaggagtcgagcgtcaggctctgg
aaggtgctggcgctggtttttggctttgccacatgtgccaccctcttcttcattctccgg
aagcagtatctgcagcggcaggagcgcctgcgcctcaagcagatgcaggaggagttccag
gagcatgaggcccagctgctgagccgagccaagcctgaggacagggagagtctgaagagc
gcctgtgtagtgtgtctgagcagcttcaagtcctgcgtctttctggagtgtgggcacgtt
tgttcctgcaccgagtgctaccgcgccttgccagagcccaagaagtgccctatctgcaga
caggcgatcacccggtgtggggccagtgaattcctcagtgctaacaggaacactcacaag
agatgtgttccccaagtccatagaggagaactggtggccacactagaggaacaggcaaaa
gttgggcggcgtcccccggcctctcgccggcgccaccgccgcagcagcccgcgggccgtc
cccggccggccgcccccggccccagcgccgctgaccctgtccgccgcgggcggggacgcg
ggcggaggaggcgccgcggcggagcccccggacgcgaccatgtcggaggtgctgccctac
ggcgacgagaagctgagcccctacggcgacggcggcgacgtgggccagatcttctcctgc
cgcctgcaggacaccaacaacttcttcggcgccgggcagaacaagcggccgcccaagctg
ggccagatcggccggagcaagcgggttgttattgaagatgataggattgatgacgtgctg
aaaaatatgaccgacaaggcacctcctggtgtctaa

>gi568815597r:20383652_20585379|GENSCAN_predicted_peptide_6|161_aa
MAASVPENDRNPVFIKEPAGHLKAAGGQVQIVQSEKNLAATKGIPHLVTNDAGTIRYPGP
LIKVNDIIQIDLDTGKSTDVIKFDTGNLWMVTGGANLGRIGVITNRERHPGSFDVVHVKD
ANSNSFATWLSSIFVIGKGNKTQGKGIHLTTAEETDKRLAA

>gi568815597r:20383652_20585379|GENSCAN_predicted_CDS_6|486_bp
atggcggcctccgttcctgagaacgacaggaaccccgtctttatcaaggagcctgctggt
cacctgaaagctgccggaggccaagtacaaattgtgcaaagtgagaaaaatcttgcggct
acaaaaggaatccctcatctggtaaccaatgatgctggcaccatccgctaccctggtccc
ctcatcaaggtgaatgacatcattcagattgatttggatactggcaagagtaccgatgtc
atcaagtttgatactggtaacctgtggatggtgactggaggtgcgaacctgggaagaatt
ggtgtgattaccaacagagagaggcaccctggatcttttgatgtggttcatgtgaaagat
gccaacagcaacagctttgccacctggctttccagcatttttgttattggcaagggcaac
aaaacccaaggaaagggtatccacctcaccactgctgaagagacagacaagagactggca
gcctaa

>gi568815597r:20383652_20585379|GENSCAN_predicted_peptide_7|76_aa
MVAQVKNFGINLNSSLSFIPFNQSRPIHISSISNCTRDLTRSHHVCCSYLVHATIISYVE
QCSNLLPTLPDLSRRP

>gi568815597r:20383652_20585379|GENSCAN_predicted_CDS_7|231_bp
atggttgctcaggtcaagaactttggcatcaatctcaactcttctctttccttcataccc
tttaaccagtccagacctattcacatcagctctatctccaactgcacccgagatctgact
cgttctcaccatgtctgctgctcctacctggtccacgctaccatcatctcttacgtggag
cagtgcagcaacctcctccctaccctaccggatctgtcccgcagaccctag

>gi568815597r:20383652_20585379|GENSCAN_predicted_peptide_8|392_aa
MGIEATSPGLRKVGQAPERVETFNVQHTCTYGHLISSLLGGGLLRAFPPPVSRQDAAPFA
AAAMLPWRRNKFVLVEDEAKCKAKSLSPGLAYTSLLSSFLRSCPDLLPDWPLERLGRVFR
SRRQKVELNKEDPTYTVWYLGNAVTLHAKGDGCTDDAVGKIWARCGPGGGTKMKLTLGPH
GIRMQPCERSAAGGSGGRRPAHAYLLPRITYCTADGRHPRVFAWVYRHQARHKAVVLRCH
AVLLARAHKARALARLLRQTALAAFSDFKRLQRQSDARHVRQQHLRAGGAAASVPRAPLR
RLLNAKCAYRPPPSERSRGAPRLSSIQEEDEEEEEDDAEEQEGGVPQRERPEVLSLAREL
RTCSLRGAPAPPPPAQPRRWKAGPRERAGQAR

>gi568815597r:20383652_20585379|GENSCAN_predicted_CDS_8|1179_bp
atgggaatagaagccacatcaccaggattaaggaaagtggggcaggctccagagagagta
gagaccttcaatgtgcagcacacatgtacctatggccacttgatctctagcctgctgggc
ggtggacttctgcgcgccttccctcccccggtctcccgacaggacgccgcccctttcgcc
gccgccgcgatgctgccctggagacgtaacaaattcgtgctggtggaggacgaggccaag
tgcaaggcgaagagcctgagtccggggctcgcctacacgtcgctgctctccagcttcctg
cgctcctgcccggacctgctgcccgactggccgctggagcgcttgggccgtgtgttccgc
agccggcgccagaaagtggagctcaacaaggaggacccgacctacaccgtgtggtacctg
ggcaacgccgtcaccctgcacgccaagggcgacggctgcaccgacgacgccgtgggcaag
atctgggctcgctgcgggcctggcgggggcactaagatgaagctgacgctggggccgcac
ggcatccgcatgcagccgtgcgagcgcagcgccgccgggggttcggggggccgcaggccg
gcgcacgcctacctgctgccgcgcatcacctactgcacggcggacgggcgccacccgcgc
gtcttcgcctgggtctaccgccaccaggcgcgccacaaggccgtggtgctgcgctgccac
gctgtgctgctggcgcgggcgcacaaggcgcgcgccctggcccgcctgctccgccagacc
gcgctggcggccttcagcgacttcaagcgcctgcagcgccagagcgacgcgcgccacgtg
cgccagcagcatctccgcgctgggggcgccgccgcctcggtgccccgcgccccactgcgc
cgcctgctcaatgccaagtgcgcctaccggccgccgccgagcgagcgcagccgcggggcg
ccgcgcctcagcagcatccaggaggaggacgaggaggaggaggaggacgacgcggaggag
caagagggaggagtcccccagcgcgagcggccggaggtgctcagcctggcccgggagctg
aggacgtgcagcctgcggggcgccccggcgcccccgccgcccgcgcagccccgccgctgg
aaggccggccccagggagcgggcgggccaggcgcgctga

>gi568815597r:20383652_20585379|GENSCAN_predicted_peptide_9|93_aa
MVFSQVVSVGLIEKQIVEAEGELNTSLRSQAARGNILADIYWPLTAYLAPWATPNPMVVI
PHVCFPKEIRRHPRAQPAIWACVYQWNFGRRLM

>gi568815597r:20383652_20585379|GENSCAN_predicted_CDS_9|282_bp
atggtattcagtcaagtagtcagtgtgggcctcattgagaagcaaatagttgaagcagaa
ggagaacttaatacatctctaaggagtcaagctgccaggggaaacatccttgcagacatc
tactggccactgacagcataccttgctccctgggccacacctaaccccatggttgtcatc
ccccatgtatgcttccccaaggagatcaggagacatcccagggcccagccagccatctgg
gcctgcgtgtatcagtggaattttggcagaaggttgatgtaa