GENSCAN 1.0	Date run:  4-Nov-116	Time: 09:22:08

Sequence gi568815597r:23409883_23630793 : 220911 bp : 49.54% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.31 Intr -   7508   7367  142  0  1   86   66   148 0.783  11.81
 1.30 Intr -   8127   8022  106  0  1   77   66   161 0.970  12.59
 1.29 Intr -   9257   9195   63  2  0  108   75    76 0.960   7.21
 1.28 Intr -  12952  12749  204  1  0   96   43    96 0.937   5.30
 1.27 Intr -  14802  14683  120  0  0   42   89   162 0.354  12.39
 1.26 Intr -  21243  21153   91  2  1   92   74    10 0.321  -0.00
 1.25 Intr -  22036  21814  223  2  1   72   77    95 0.406   3.99
 1.24 Intr -  23390  23195  196  2  1   85   77    93 0.942   6.89
 1.23 Intr -  23811  23543  269  1  2  100   98   166 0.528  16.05
 1.22 Intr -  24487  24372  116  0  2  106   75   180 0.999  18.59
 1.21 Intr -  24736  24651   86  1  2   35   80   110 0.999   3.52
 1.20 Intr -  26146  25969  178  0  1   49   94   192 0.978  15.82
 1.19 Intr -  26772  26678   95  0  2   65   75    65 0.999   1.66
 1.18 Intr -  27162  27029  134  1  2  103   73   164 0.999  16.76
 1.17 Intr -  27438  27248  191  2  2  109   67   252 0.999  24.43
 1.16 Intr -  27715  27542  174  0  0   86   69   191 0.779  16.05
 1.15 Intr -  28952  28858   95  2  2   70  -23   163 0.528   2.16
 1.14 Intr -  29348  29279   70  1  1   65   89    28 0.831  -0.22
 1.13 Intr -  31335  31220  116  0  2   15  114    97 0.693   4.25
 1.12 Intr -  31591  31505   87  1  0   78   60   107 0.991   7.07
 1.11 Intr -  31848  31773   76  2  1   39   92    99 0.990   4.92
 1.10 Intr -  32389  32304   86  1  2   79   58    77 0.989   2.42
 1.09 Intr -  32730  32619  112  2  1   70   94    97 0.992   8.88
 1.08 Intr -  41646  41597   50  0  2  107  101    45 0.982   5.18
 1.07 Intr -  42889  42815   75  1  0   73  109    33 0.888   3.61
 1.06 Intr -  46144  45999  146  2  2  105   81   205 0.955  21.50
 1.05 Intr -  46312  46240   73  1  1   77  111    67 0.999   6.88
 1.04 Intr -  74270  74123  148  1  1   76   78   325 0.082  30.54
 1.03 Intr -  89838  89808   31  1  1   63   95    29 0.004  -1.71
 1.02 Intr -  96303  96203  101  2  2  125   45    59 0.968   5.05
 1.01 Init -  96777  96740   38  0  2   98   80   111 0.982   8.79
 1.00 Prom -  97328  97289   40                              -7.96

 2.09 PlyA -  98987  98982    6                              -0.45
 2.08 Term - 100266  99998  269  1  2   82   48   299 0.934  20.96
 2.07 Intr - 106645 106453  193  1  1  138   96   160 0.995  20.87
 2.06 Intr - 109226 109134   93  2  0   61   78   140 0.913  10.46
 2.05 Intr - 111189 111006  184  2  1   64  -24   189 0.784   5.09
 2.04 Intr - 112174 111955  220  2  1  137   59   473 0.938  46.66
 2.03 Intr - 114606 114501  106  0  1   98   80    29 0.894   2.89
 2.02 Intr - 120314 120248   67  1  1   47   91    32 0.343  -1.69
 2.01 Init - 120911 120568  344  2  2   56   80   242 0.461  14.93
 2.00 Prom - 122482 122443   40                              -3.06

 3.03 PlyA - 122634 122629    6                               1.05
 3.02 Term - 149137 149078   60  1  0   99   41    64 0.494   0.60
 3.01 Init - 149544 149245  300  0  0   90  115   426 0.928  42.75
 3.00 Prom - 154280 154241   40                              -4.26

 4.00 Prom + 172946 172985   40                              -3.56
 4.01 Init + 179182 179246   65  0  2   62   61    57 0.018   1.02
 4.02 Intr + 197550 197619   70  0  1  106   73    72 0.076   6.68
 4.03 Term + 203160 203327  168  2  0   59   47   139 0.939   4.78
 4.04 PlyA + 206138 206143    6                               1.05

 5.03 PlyA - 207652 207647    6                               1.05
 5.02 Term - 209808 209588  221  1  2   37   43   191 0.963   6.70
 5.01 Init - 211249 211186   64  1  1   60   89    19 0.940   0.52
 5.00 Prom - 213624 213585   40                              -8.16

 6.03 PlyA - 213753 213748    6                               1.05
 6.02 Term - 216523 216028  496  0  1   64   38  1605 0.834 147.14
 6.01 Init - 217310 217243   68  2  2   79   84    68 0.547   4.06

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  55044  55117   74  2  2   71   82    79 0.839   6.14


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:23409883_23630793|GENSCAN_predicted_peptide_1|1231_aa
MVATRLASLLAPGFLKGLAAHTLPPTLYISGSNCSPQTSSSSITWKYPSTDPGRENSSTL
APAMPEQFSVAEFLAVTAEDLSSPAGAAAFAAKMPRYRGAALAREEILEGDQAILQRIKK
AVRAIHSSGLGHVENEEQYREAVESLGNSHLSQNSHELSTGFLNLAVFTREVAALFKNLI
QNLNNIVSFPLDSLMKGQLRDGRQDSKKQLEKAWKDYEAKMAKLEKERDRARVTGGIPGE
VAQDMQRERRIFQLHMCEYLLKAGESQMKQGPDFLQSLIKFFHAQHNFFQDGWKAAQSLF
PFIEKLAASVHALHQAQEDELQKLTQLRDSLRGTLQLESREGQEHLSRKNSGCGYSIHQH
QGNKQFGTEKVGFLYKKSDGIRRVWQKRKCGVKYGCLTISHSTINRPPVKLTLLTCQVRP
NPEEKKCFDLVTRECLRVRLVRDTSPCGPSGFGGGSLGSGKASSISVGQKPPSLPTDNRT
YHFQAEDEHECEAWVSVLQNSKDEALSSAFLGEPSAGPGSWGSAGHDGEPHDLTKLLIAE
VKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSEL
LLALNMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCTPEPQRL
WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN
GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE
ELVRTRGGKGPLTLSLSLLSPQPSEPPSLCFWQLEQAQAGTFAFPLHVDYSWVISTEPGS
DSEEDEEEKRCLLKLPAQAHWASGRLDISNKTYETVASLGAATPQGESEDCPPPLPVKNS
SRTLVQGCARHASGDRSEVSSLSSEAPETPESLGSPASSSSLMSPLEPGDPSQAPPNSEE
GLREPPGTSRPSLTSGTTPSEMYLPVRFSSESTRSYRRGARSPEDGPSARQPLPRRNVPA
LLLPLCPSPRRASRANMGQEEELLRIAKKLEKMVARKNTAKATQPSLSGPRVSSSVKWEE
EMVSFGDGFLWKCPELSPEKMQVWPQGPCSMEPVYSHVCAWALGSVWEGALDLLKKLHSC
QMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKA
KKKEKGLECSDWKPEAGLSPPRKKREDPKTS

>gi568815597r:23409883_23630793|GENSCAN_predicted_CDS_1|3693_bp
atggtggccacacgcctggccagcctgctggctcctggcttcctgaaaggtcttgctgcc
cacactctccctcccaccctctacatcagtgggtccaactgtagtcctcagaccagcagc
agcagtatcacctggaaatatccttccacagatcctggaagagagaacagctccacgctc
gcgcccgccatgccggagcagttcagcgtcgccgagttcctggccgtcaccgcggaggac
ctcagctccccggctggggccgccgccttcgccgccaagatgccccggtaccgaggggcg
gcgctggcgcgggaggagatcttggaaggagaccaagccatcctgcagagaataaagaag
gctgtgcgggcaatccatagctccggccttggccatgtggagaatgaagagcagtaccga
gaggccgtggaatccttaggcaacagccacctgtcccagaacagccatgagctgtccaca
ggcttcctaaacttggccgtgttcacccgcgaggttgctgcgctcttcaagaacctgatt
cagaacttgaacaacattgtctctttccccctggacagtctgatgaaggggcagctgagg
gacggtcgacaggattccaaaaaacagctggagaaggcatggaaggactatgaagccaaa
atggccaagctggagaaggagcgcgatcgggccagggtgacaggagggatccctggggag
gtggcccaggacatgcagagagagcggcgcatcttccagctgcacatgtgtgagtatctg
ctcaaagccggggagagccagatgaagcaaggtcctgacttccttcagagcctcatcaag
ttcttccacgcccagcacaactttttccaagatggctggaaggctgcccagagcctgttc
cccttcatcgagaagctggcggcctcagtacatgcactccatcaggcccaggaggacgag
ctacagaagctgacccagctccgggactccctccgagggacactgcagcttgagagcaga
gagggacaggaacacctgagccggaagaactcaggatgtggctatagcatccaccagcac
caaggcaacaagcagtttgggacggagaaagtgggctttctatacaagaaaagtgacgga
attcgaagagtctggcagaaaaggaagtgtggagtcaagtatggctgcctgaccatctca
cacagcacgataaaccggcccccggtgaagctgaccctgctgacgtgccaagtgaggcca
aaccctgaggagaaaaagtgcttcgacctggtgacccgtgagtgcttgagagtccgactt
gtcagggacacatctccatgtggccccagcggctttggtgggggctccctgggctccggg
aaggccagcagcatttctgtgggtcagaagcccccttctctcccgacagacaaccggacg
taccactttcaggcagaggacgagcacgagtgtgaggcgtgggtgtcagtgttgcagaac
agcaaggacgaagccctgagcagcgccttcctcggggagcccagcgctggcccggggtcc
tgggggtccgccggccatgatggggagccgcacgacctcacaaagctgctcatcgcggag
gtgaagagcaggcctgggaatagccagtgctgcgactgcggggctgcagaccccacgtgg
ctcagcaccaacctgggcgtgctcacctgcatccagtgctcgggcgtccaccgcgaactg
ggcgtgcgcttttcgcgcatgcagtcactcaccttggacctgctgggcccctccgagttg
ttgctggccttgaacatgggaaacacgagcttcaatgaggtcatggaggcccagctaccc
tcacacggcggccctaaaccctcagctgagagtgacatgggcacccgcagggactacatt
atggccaagtatgtggagcataggtttgcacgccggtgcacacctgagcctcagcgactc
tggacagccatttgcaacagggacctcctgtcggtactggaggcctttgccaatgggcag
gactttggacagccgctgccagggcctgatgcacaggcacctgaagaactcgtcttgcat
ttggctgtcaaagtcgccaaccaggcttccctgcctctggtggatttcatcatccagaac
ggtggtcacctggatgccaaggctgctgacgggaacacggctctgcactacgcagcactc
tacaaccagcccgactgcctcaagctgctgctgaaggggagagctttggttggcacagta
aatgaagcaggcgagacagctctggacatagccaggaagaagcaccacaaggagtgtgag
gagctggtgaggactcggggaggcaaggggcccctgactctttctctctccctgctgagc
ccccaaccctctgaaccaccaagcctttgtttttggcagctggagcaggcccaggcgggg
acctttgccttccctctacatgtggactactcctgggtaatttccacagagcctggctct
gacagtgaggaggatgaggaagagaagcgctgcttgctgaagctcccggcccaggctcac
tgggccagtgggaggctggacatcagcaacaagacctatgagactgtcgccagcctggga
gcagccacccctcagggcgagagtgaggactgtcccccgcccttgccagtcaaaaactct
tctcggactttggtccaagggtgtgcaagacatgccagtggagatcgttctgaagtctcc
agcctgagttcagaggcccctgagacccctgagagcctgggcagtccagcctcctcctcc
agtctgatgagccccttggaacctggggatcccagccaagccccacccaactctgaagag
ggcctccgagagcccccaggcacctccagacccagcctgacatccgggaccaccccttcg
gagatgtacctccccgtcagattcagctccgagagcactcgctcctatcggcggggggcg
cggagccctgaagatggtccctcagccaggcagcctctgcccagaaggaacgtgccggcc
ctactgctgcccctgtgcccctcgccccgccgggcgtcgcgggccaacatgggccaggaa
gaggagctgctgaggatcgccaaaaagctggagaagatggtggccaggaagaacacggca
aaagccactcaaccttccctttctggacctcgagtttcctcttctgtgaaatgggaagag
gaaatggtgtcttttggagatggattcctgtggaagtgcccagagctgtcccctgaaaag
atgcaagtctggccgcagggtccctgcagcatggagccagtttacagccacgtctgcgcc
tgggctctcggcagtgtctgggaaggggccctggaccttctgaagaagctgcacagctgc
cagatgtccatccagctactacagacaaccaggattggagttgctgttaatggggtccgc
aagcactgctcagacaaggaggtggtgtccttggccaaagtccttatcaaaaactggaag
cggctgctagactcccctggacccccaaaaggagaaaaaggagaggaaagagaaaaggca
aagaagaaggaaaaagggcttgagtgttcagactggaagccagaagcaggcctttctcca
ccaaggaaaaaacgagaagaccccaaaaccagn

>gi568815597r:23409883_23630793|GENSCAN_predicted_peptide_2|491_aa
MLQGPRALASAAGQTPKVVPAMSPTELWPSGLSSPQLCPATATYYTPLYPQTAPPAAAPG
TCLDATPHGPEGQVVRCLPAGRLPVMLGAPTASPYAFPGVGKEGGVPEIQFEWSRNQYWV
PAIVQAKSMAWGHCGTLAKRKLDLEGIGRPVVPEFPTPKGKCIRVDGLPSPKTPKSPGEK
TRYDTSLGLLTKKFIYLLSESEDGVLDLNWAAEVLDVQKRRIYDITNVLEGIQLIRKKAK
NNIQWVGRGMFEDPTRPGKQQQLGQELKELMNTEQALDQLIQSCSLSFKHLTEDKANKRY
PPWLGEGDIRAVGNFKEQTVIAVKAPPQTRLEVPDRTEDNLQIYLKSTQGPIEVYLCPEE
VQEPDSPSEEPLPSTSTLCPSPDSAQPSSSTDPSIMEPTASSVPAPAPTPQQAPPPPSLV
PLEATDSLLELPHPLLQQTEDQFLSPTLACSSPLISFSPSLDQDDYLWGLEAGEGISDLF
DSYDLGDLLIN

>gi568815597r:23409883_23630793|GENSCAN_predicted_CDS_2|1476_bp
atgctgcaagggccccgggccttggcttcggccgctgggcagaccccgaaggtggtgccc
gcgatgagccccacagagctgtggccatccggcctcagcagcccccagctctgcccagct
actgctacctactacacaccgctgtacccgcagacggcgcctcccgcagcggcgccaggc
acctgcctcgacgccactccccacggacccgagggccaagttgtgcgatgcctgccggca
ggccggctgccggtaatgctgggggcccccaccgcttccccctatgcttttccaggtgtg
ggaaaggagggaggggtgcctgagatccagtttgagtggagcagaaaccagtactgggtg
cctgctattgtccaggcaaagagtatggcctggggacactgtgggactttggccaaaagg
aagctggatctggaggggattgggaggcccgtcgtccctgagttcccaacccccaagggg
aagtgcatcagagtggatggcctccccagccccaaaacccccaaatcccccggggagaag
actcggtatgacacttcgctggggctgctcaccaagaagttcatttacctcctgagcgag
tcagaggatggggtcctggacctgaactgggccgctgaggtgctggacgtgcagaagcgg
cgcatctatgacatcaccaacgtgctggaaggcatccagctcatccgcaagaaggccaag
aacaacatccagtgggtaggcaggggaatgtttgaagaccccaccagacctgggaagcag
caacagctggggcaggagctgaaggagctgatgaacacggagcaggccttggaccagctc
atccagagctgctctctgagcttcaagcacctgactgaggacaaggccaacaagagatat
cctccttggttgggggaaggtgatatccgtgctgttggcaactttaaggagcagacagtg
attgccgtcaaggcccctccgcagacgagactggaagtgcccgacaggactgaggacaac
ctgcagatatatctcaagagcacccaagggcccatcgaagtctacctgtgcccagaggag
gtgcaggagccggacagtccttccgaggagcctctcccctctacctccaccctctgcccc
agccctgactctgcccagcccagcagcagcaccgaccctagcatcatggagcccacagca
tcctcagtgccagcaccagcgccaaccccccagcaggccccaccgcctccatccctggtc
cccttggaggctactgacagcctgctggagctgccgcacccactcctgcagcagactgag
gaccagttcctgtccccgaccctggcgtgcagctcccctctgatcagcttctccccatcc
ttggaccaggacgactacctgtggggcttggaggcgggtgagggcatcagcgatctcttc
gactcctacgaccttggggacctgttgattaattga

>gi568815597r:23409883_23630793|GENSCAN_predicted_peptide_3|119_aa
MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR
GTQLSQVEILQRVIDYILDLQVVLAEPAPGPPDGPHLPIQTAELTPELVISNDKRSFCH

>gi568815597r:23409883_23630793|GENSCAN_predicted_CDS_3|360_bp
atgaaggcgctgagcccggtgcgcggctgctacgaggcggtgtgctgcctgtcggaacgc
agtctggccatcgcccggggccgagggaagggcccggcagctgaggagccgctgagcttg
ctggacgacatgaaccactgctactcccgcctgcgggaactggtacccggagtcccgaga
ggcactcagcttagccaggtggaaatcctacagcgcgtcatcgactacattctcgacctg
caggtagtcctggccgagccagcccctggaccccctgatggcccccaccttcccatccag
acagccgagctcactccggaacttgtcatctccaacgacaaaaggagcttttgccactga

>gi568815597r:23409883_23630793|GENSCAN_predicted_peptide_4|100_aa
MQREHGPEPLVRFLRKGMGEVGTYLSTVPDFNGTGSIGGQNIQGYETQIVMITGIVVQNN
TGDDDNTTIMEGAYFHWLNNYPNAHMEGAWGFKKRLLEAG

>gi568815597r:23409883_23630793|GENSCAN_predicted_CDS_4|303_bp
atgcaaagagagcatggcccagagcctttagtgcggtttttgcggaaaggaatgggcgag
gtaggaacatacctgtccacagtccctgacttcaatggcacagggtccattgggggccag
aacattcaaggctatgaaacccagattgttatgattactggtattgttgtccaaaacaat
actggagacgatgacaatacaacaatcatggagggtgcttatttccactggctcaacaat
tatcccaacgcccatatggagggggcctggggcttcaagaagaggcttctcgaggcagga
tga

>gi568815597r:23409883_23630793|GENSCAN_predicted_peptide_5|94_aa
MDWIGKLDEELRSRPHLGQYPGPSPTPTRAHPPRRRRHRLRTCRACCGEARLCCGGGGGG
GGWRGGDADSHSRPYRLLPASPPELRHQALGALP

>gi568815597r:23409883_23630793|GENSCAN_predicted_CDS_5|285_bp
atggattggattggaaagctggatgaggagctgaggagcagacctcacctgggacaatat
ccaggtccctcgcccacgcccacgcgggcgcacccgccgcgccgacgccgccaccggctg
cgcacctgccgcgcttgctgcggggaagccaggctctgctgtggcggcggcggcggcggc
ggcggctggcggggaggagacgcggactcccactcgcggccctatcgcttgctccccgcc
tccccgccagagctgcgccaccaggctctgggcgcgctcccatga

>gi568815597r:23409883_23630793|GENSCAN_predicted_peptide_6|187_aa
MRLEVQELGPAGGTWQVTFPLKGILIIPIIIPIIIIPIIIITITIIPIIIIPITIIPITI
IPTIIIPIITIIPIIIIPITIIPITIIPTIIIPIIIITIIIIPIIITITTIIIIPNITII
IIPIIITITITIIIIPITIITITINITIITITIIPIITIIITITIIPIIIILLLITIIVI
CMEASLY

>gi568815597r:23409883_23630793|GENSCAN_predicted_CDS_6|564_bp
atgaggctggaagtgcaggaacttggaccggcggggggaacctggcaggtcacattccct
ctcaagggaatcctcatcatccccatcatcatccccatcatcatcatccccatcatcatc
atcaccatcaccatcatccccatcatcatcatccccatcaccatcatccccatcaccatc
atccccaccatcatcatccccatcatcaccatcatccccatcatcatcatccccatcacc
atcatccccatcaccatcatccccaccatcatcatccccatcatcatcatcaccatcatc
atcatccccatcatcatcaccatcaccaccatcatcatcatccccaacatcaccatcatc
atcatccccatcatcatcaccatcaccatcaccatcatcatcatccccatcaccatcatc
accatcaccatcaacatcaccatcatcaccatcaccatcatccccatcatcaccatcatc
atcaccatcaccatcatccctatcattatcatcctcctcctgatcaccataattgtcatc
tgcatggaagctagcctatattga