Result of FASTA (ccds) for pF1KB7721
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7721, 428 aa
  1>>>pF1KB7721 428 - 428 aa - 428 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6102+/-0.000938; mu= 15.4694+/- 0.056
 mean_var=65.4504+/-13.375, 0's: 0 Z-trim(104.8): 28  B-trim: 443 in 1/49
 Lambda= 0.158532
 statistics sampled from 8084 (8109) to 8084 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.626), E-opt: 0.2 (0.249), width:  16
 Scan time:  2.750

The best scores are:                                      opt bits E(32554)
CCDS4264.1 HDAC3 gene_id:8841|Hs108|chr5           ( 428) 2983 691.3 4.8e-199
CCDS360.1 HDAC1 gene_id:3065|Hs108|chr1            ( 482) 1833 428.3 8.1e-120
CCDS43493.2 HDAC2 gene_id:3066|Hs108|chr6          ( 488) 1833 428.3 8.2e-120
CCDS14420.1 HDAC8 gene_id:55869|Hs108|chrX         ( 377) 1048 248.7 7.2e-66
CCDS55449.1 HDAC8 gene_id:55869|Hs108|chrX         ( 286)  753 181.2 1.2e-45
CCDS55451.1 HDAC8 gene_id:55869|Hs108|chrX         ( 256)  725 174.7 8.9e-44
CCDS55450.1 HDAC8 gene_id:55869|Hs108|chrX         ( 146)  312 80.2 1.5e-15
CCDS55452.1 HDAC8 gene_id:55869|Hs108|chrX         ( 158)  312 80.2 1.6e-15
CCDS83163.1 HDAC9 gene_id:9734|Hs108|chr7          (1025)  322 82.8 1.7e-15
CCDS47554.1 HDAC9 gene_id:9734|Hs108|chr7          (1066)  322 82.8 1.8e-15
CCDS47553.1 HDAC9 gene_id:9734|Hs108|chr7          (1069)  322 82.8 1.8e-15
CCDS45696.1 HDAC5 gene_id:10014|Hs108|chr17        (1122)  322 82.8 1.8e-15
CCDS32663.1 HDAC5 gene_id:10014|Hs108|chr17        (1123)  322 82.8 1.8e-15
CCDS14306.1 HDAC6 gene_id:10013|Hs108|chrX         (1215)  321 82.6 2.3e-15
CCDS47555.1 HDAC9 gene_id:9734|Hs108|chr7          (1011)  318 81.9 3.2e-15
CCDS2529.1 HDAC4 gene_id:9759|Hs108|chr2           (1084)  308 79.6 1.6e-14
CCDS41776.1 HDAC7 gene_id:51564|Hs108|chr12        ( 954)  302 78.2 3.8e-14
CCDS81685.1 HDAC7 gene_id:51564|Hs108|chr12        ( 974)  302 78.2 3.9e-14
CCDS8756.2 HDAC7 gene_id:51564|Hs108|chr12         ( 991)  302 78.2 3.9e-14
CCDS14088.1 HDAC10 gene_id:83933|Hs108|chr22       ( 669)  294 76.3 9.9e-14
CCDS54545.1 HDAC10 gene_id:83933|Hs108|chr22       ( 649)  258 68.1 2.9e-11


>>CCDS4264.1 HDAC3 gene_id:8841|Hs108|chr5                (428 aa)
 initn: 2983 init1: 2983 opt: 2983  Z-score: 3686.9  bits: 691.3 E(32554): 4.8e-199
Smith-Waterman score: 2983; 100.0% identity (100.0% similar) in 428 aa overlap (1-428:1-428)

               10        20        30        40        50        60
pF1KB7 MAKTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MAKTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 KICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 FYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 NQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 NQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 RNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 TIFENLKMLNHAPSVQIHDVPADLLTYDRTDEADAEERGPEENYSRPEAPNEFYDGDHDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TIFENLKMLNHAPSVQIHDVPADLLTYDRTDEADAEERGPEENYSRPEAPNEFYDGDHDN
              370       380       390       400       410       420

               
pF1KB7 DKESDVEI
       ::::::::
CCDS42 DKESDVEI
               

>>CCDS360.1 HDAC1 gene_id:3065|Hs108|chr1                 (482 aa)
 initn: 1130 init1: 977 opt: 1833  Z-score: 2264.6  bits: 428.3 E(32554): 8.1e-120
Smith-Waterman score: 1833; 58.8% identity (84.0% similar) in 425 aa overlap (3-421:9-428)

                     10        20        30        40        50    
pF1KB7       MAKTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQAS
               . : :.:: ::::..:: ::::::::. .::.:.:.::::.:: ...:..:.
CCDS36 MAQTQGTRRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN
               10        20        30        40        50        60

           60        70        80        90       100       110    
pF1KB7 QHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQG
        ..: ..::.::: ::. . : ::. ..:... ::::.::::: ::::::.  ::.:. .
CCDS36 AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAS
               70        80        90       100       110       120

          120       130       140       150       160       170    
pF1KB7 ATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHG
       :..::..  :::.::::::::::: ::::::::::::..:::::::: ::::::::::::
CCDS36 AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
              130       140       150       160       170       180

          180       190       200       210       220       230    
pF1KB7 DGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKH
       :::.:::: :::::::::::::.:: :::::. ..:: .:.:: .: ::::::::.::. 
CCDS36 DGVEEAFYTTDRVMTVSFHKYGEYF-PGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
              190       200        210       220       230         

          240       250       260       270       280       290    
pF1KB7 LFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLG
       .:.::...:....::. .:::::.:::. ::::::::.:.::..:::.:::::.:.:.::
CCDS36 IFKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLG
     240       250       260       270       280       290         

          300       310       320       330       340       350    
pF1KB7 GGGYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQY
       :::::.:::::::::::.. ..  : .::::..:::::.::: :: . :. . :::. .:
CCDS36 GGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSN-MTNQNTNEY
     300       310       320       330       340        350        

          360       370       380       390       400              
pF1KB7 LDQIRQTIFENLKMLNHAPSVQIHDVPADLLTYDRTDEADAEERGPEENYS------RPE
       :..:.: .::::.:: :::.::.. .: : .  .  ::   .:  :..  :      :  
CCDS36 LEKIKQRLFENLRMLPHAPGVQMQAIPEDAIPEESGDE---DEDDPDKRISICSSDKRIA
      360       370       380       390          400       410     

      410       420                                                
pF1KB7 APNEFYDGDHDNDKESDVEI                                        
         .:: :......                                               
CCDS36 CEEEFSDSEEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEKTKEEKPEAKGV
         420       430       440       450       460       470     

>>CCDS43493.2 HDAC2 gene_id:3066|Hs108|chr6               (488 aa)
 initn: 1131 init1: 978 opt: 1833  Z-score: 2264.5  bits: 428.3 E(32554): 8.2e-120
Smith-Waterman score: 1833; 58.8% identity (83.8% similar) in 425 aa overlap (3-421:10-429)

                      10        20        30        40        50   
pF1KB7        MAKTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQA
                : : :.:: :.::..:: ::::::::. .::.:.:.::::.:: ...:..:
CCDS43 MAYSQGGGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KB7 SQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQ
       . ..: ..::..:: ::. . : ::. ..:... ::::.::::: ::::::.  ::.:. 
CCDS43 TAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
               70        80        90       100       110       120

           120       130       140       150       160       170   
pF1KB7 GATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHH
       ::..:: .  :.:.::::::::::: ::::::::::::..:::::::: :::::::::::
CCDS43 GAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
              130       140       150       160       170       180

           180       190       200       210       220       230   
pF1KB7 GDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYK
       ::::.:::: :::::::::::::.:: :::::. ..:: .:.:: .: :.::::::.:: 
CCDS43 GDGVEEAFYTTDRVMTVSFHKYGEYF-PGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYG
              190       200        210       220       230         

           240       250       260       270       280       290   
pF1KB7 HLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVL
       ..:.:.:..:...:::. .:::::::::. ::::::::...::..::: ::.::.:::.:
CCDS43 QIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLML
     240       250       260       270       280       290         

           300       310       320       330       340       350   
pF1KB7 GGGGYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQ
       ::::::.:::::::::::.. ..  : .::::..:::::.::: :: . :. . :::. .
CCDS43 GGGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSN-MTNQNTPE
     300       310       320       330       340       350         

           360       370       380       390       400             
pF1KB7 YLDQIRQTIFENLKMLNHAPSVQIHDVPADLLTYDRTDEADAEERGPEENYS------RP
       :...:.: .::::.:: :::.::.. .: : .  :  :: :.:.  :..  :      : 
CCDS43 YMEKIKQRLFENLRMLPHAPGVQMQAIPEDAVHEDSGDE-DGED--PDKRISIRASDKRI
      360       370       380       390        400         410     

       410       420                                               
pF1KB7 EAPNEFYDGDHDNDKESDVEI                                       
          .:: :.. ...                                              
CCDS43 ACDEEFSDSEDEGEGGRRNVADHKKGAKKARIEEDKKETEDKKTDVKEEDKSKDNSGEKT
         420       430       440       450       460       470     

>>CCDS14420.1 HDAC8 gene_id:55869|Hs108|chrX              (377 aa)
 initn: 1038 init1: 882 opt: 1048  Z-score: 1296.0  bits: 248.7 E(32554): 7.2e-66
Smith-Waterman score: 1048; 43.3% identity (75.1% similar) in 342 aa overlap (26-367:35-374)

                    10        20        30        40        50     
pF1KB7      MAKTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQ
                                     :.: ...:::.  :.:.:.: . ::  ::.
CCDS14 EEPADSGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASM
           10        20        30        40        50        60    

          60        70        80        90       100       110     
pF1KB7 HDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGA
       ..:  ::.. :.. ::.::  . .    :.. ...: :::.  :.:.. .   ::.. .:
CCDS14 EEMATFHTDAYLQHLQKVSQEGDDDHPDSIE-YGLGYDCPATEGIFDYAAAIGGATITAA
           70        80        90        100       110       120   

         120       130       140       150       160       170     
pF1KB7 TQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGD
         : . .: .::::.:: ::::: :::::::.:: :.:::.: .   :.::.:.:.::::
CCDS14 QCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGD
           130       140       150       160       170       180   

         180       190       200       210       220       230     
pF1KB7 GVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHL
       ::..:: .:..:::::.::..  :::::::. .::  .:::: .:::..:::.:..: ..
CCDS14 GVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQI
           190       200       210       220       230       240   

         240       250       260       270       280       290     
pF1KB7 FQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGG
        . :...: . ..:  .::: :::... : .  ::..  : :.:..:. ....  :.:::
CCDS14 CESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGG
           250       260       270       280       290       300   

         300       310       320       330       340       350     
pF1KB7 GGYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYL
       :::.. :.:::::: :.... ...: :.:  :.:  ..::..:.   : :  ..:  . .
CCDS14 GGYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCR-PDRNEPHRI
           310       320       330       340       350        360  

         360       370       380       390       400       410     
pF1KB7 DQIRQTIFENLKMLNHAPSVQIHDVPADLLTYDRTDEADAEERGPEENYSRPEAPNEFYD
       .:: . :  :::                                                
CCDS14 QQILNYIKGNLKHVV                                             
            370                                                    

>>CCDS55449.1 HDAC8 gene_id:55869|Hs108|chrX              (286 aa)
 initn: 750 init1: 729 opt: 753  Z-score: 933.3  bits: 181.2 E(32554): 1.2e-45
Smith-Waterman score: 753; 45.0% identity (76.9% similar) in 238 aa overlap (130-367:47-283)

     100       110       120       130       140       150         
pF1KB7 LFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLK
                                     : .::.  . :::::::.:: :.:::.: .
CCDS55 VYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRDEASGFCYLNDAVLGILRLRR
         20        30        40        50        60        70      

     160       170       180       190       200       210         
pF1KB7 YHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCL
          :.::.:.:.::::::..:: .:..:::::.::..  :::::::. .::  .:::: .
CCDS55 KFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSV
         80        90       100       110       120       130      

     220       230       240       250       260       270         
pF1KB7 NVPLRDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGEC
       :::..:::.:..: .. . :...: . ..:  .::: :::... : .  ::..  : :.:
CCDS55 NVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKC
        140       150       160       170       180       190      

     280       290       300       310       320       330         
pF1KB7 VEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLH
       ..:. ....  :.::::::.. :.:::::: :.... ...: :.:  :.:  ..::..:.
CCDS55 LKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLE
        200       210       220       230       240       250      

     340       350       360       370       380       390         
pF1KB7 PDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQIHDVPADLLTYDRTDEADAEERG
          : :  ..:  . ..:: . :  :::                                
CCDS55 ITPSCR-PDRNEPHRIQQILNYIKGNLKHVV                             
        260        270       280                                   

>>CCDS55451.1 HDAC8 gene_id:55869|Hs108|chrX              (256 aa)
 initn: 716 init1: 581 opt: 725  Z-score: 899.4  bits: 174.7 E(32554): 8.9e-44
Smith-Waterman score: 725; 47.6% identity (77.6% similar) in 210 aa overlap (26-235:35-243)

                    10        20        30        40        50     
pF1KB7      MAKTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQ
                                     :.: ...:::.  :.:.:.: . ::  ::.
CCDS55 EEPADSGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASM
           10        20        30        40        50        60    

          60        70        80        90       100       110     
pF1KB7 HDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGA
       ..:  ::.. :.. ::.::  . .    :.. ...: :::.  :.:.. .   ::.. .:
CCDS55 EEMATFHTDAYLQHLQKVSQEGDDDHPDSIE-YGLGYDCPATEGIFDYAAAIGGATITAA
           70        80        90        100       110       120   

         120       130       140       150       160       170     
pF1KB7 TQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGD
         : . .: .::::.:: ::::: :::::::.:: :.:::.: .   :.::.:.:.::::
CCDS55 QCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGD
           130       140       150       160       170       180   

         180       190       200       210       220       230     
pF1KB7 GVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHL
       ::..:: .:..:::::.::..  :::::::. .::  .:::: .:::..:::.:..: ..
CCDS55 GVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQI
           190       200       210       220       230       240   

         240       250       260       270       280       290     
pF1KB7 FQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGG
                                                                   
CCDS55 CERYEPPAPNPGL                                               
           250                                                     

>>CCDS55450.1 HDAC8 gene_id:55869|Hs108|chrX              (146 aa)
 initn: 313 init1: 178 opt: 312  Z-score: 392.8  bits: 80.2 E(32554): 1.5e-15
Smith-Waterman score: 312; 38.9% identity (70.8% similar) in 113 aa overlap (26-138:35-146)

                    10        20        30        40        50     
pF1KB7      MAKTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQ
                                     :.: ...:::.  :.:.:.: . ::  ::.
CCDS55 EEPADSGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASM
           10        20        30        40        50        60    

          60        70        80        90       100       110     
pF1KB7 HDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGA
       ..:  ::.. :.. ::.::  . .    :.. ...: :::.  :.:.. .   ::.. .:
CCDS55 EEMATFHTDAYLQHLQKVSQEGDDDHPDSIE-YGLGYDCPATEGIFDYAAAIGGATITAA
           70        80        90        100       110       120   

         120       130       140       150       160       170     
pF1KB7 TQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGD
         : . .: .::::.:: :::::                                     
CCDS55 QCLIDGMCKVAINWSGGWHHAKK                                     
           130       140                                           

>>CCDS55452.1 HDAC8 gene_id:55869|Hs108|chrX              (158 aa)
 initn: 313 init1: 178 opt: 312  Z-score: 392.3  bits: 80.2 E(32554): 1.6e-15
Smith-Waterman score: 312; 38.9% identity (70.8% similar) in 113 aa overlap (26-138:35-146)

                    10        20        30        40        50     
pF1KB7      MAKTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQ
                                     :.: ...:::.  :.:.:.: . ::  ::.
CCDS55 EEPADSGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASM
           10        20        30        40        50        60    

          60        70        80        90       100       110     
pF1KB7 HDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGA
       ..:  ::.. :.. ::.::  . .    :.. ...: :::.  :.:.. .   ::.. .:
CCDS55 EEMATFHTDAYLQHLQKVSQEGDDDHPDSIE-YGLGYDCPATEGIFDYAAAIGGATITAA
           70        80        90        100       110       120   

         120       130       140       150       160       170     
pF1KB7 TQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGD
         : . .: .::::.:: :::::                                     
CCDS55 QCLIDGMCKVAINWSGGWHHAKKETCVYVALYKAF                         
           130       140       150                                 

>>CCDS83163.1 HDAC9 gene_id:9734|Hs108|chr7               (1025 aa)
 initn: 245 init1: 105 opt: 322  Z-score: 391.7  bits: 82.8 E(32554): 1.7e-15
Smith-Waterman score: 333; 25.8% identity (54.4% similar) in 388 aa overlap (9-359:596-971)

                                     10        20            30    
pF1KB7                       MAKTVAYFYDPDVGNFHYGAG----HPMKPHRLALTHS
                                     ::: . . .   :    :: .  :.    :
CCDS83 SRTHSSPAASVLPHPAMDRPLQPGSATGIAYDPLMLKHQCVCGNSTTHPEHAGRIQSIWS
         570       580       590       600       610       620     

           40        50        60        70        80        90    
pF1KB7 LVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDC
        . . :: .:   ..  .:: ...   ::: . ..:  ..: . : .   .    .::: 
CCDS83 RLQETGLLNKCERIQGRKASLEEIQLVHSEHH-SLLYGTNPLDGQKLDPRIL---LGDDS
         630       640       650        660       670          680 

               100       110          120       130                
pF1KB7 PVF----P-GLFEFCSRYTGASLQ--GATQLN-NKICDIAINWAGGL------------H
         :    : : .   :      :.  ::...  . . ..: . :.:             :
CCDS83 QKFFSSLPCGGLGVDSDTIWNELHSSGAARMAVGCVIELASKVASGELKNGFAVVRPPGH
             690       700       710       720       730       740 

          140       150       160          170       180       190 
pF1KB7 HAKKFEASGFCYVNDIVIGILELLKYH---PRVLYIDIDIHHGDGVQEAFYLTDRVMTVS
       ::..  : :::. :...:   . :. .    ..: .:.:.:::.:.:.:::    .. .:
CCDS83 HAEESTAMGFCFFNSVAI-TAKYLRDQLNISKILIVDLDVHHGNGTQQAFYADPSILYIS
             750        760       770       780       790       800

               200       210       220           230       240     
pF1KB7 FHKY--GNYFFPGTGDMYEVGAESGRYYCLNVPLRDGID----DQSYKHLFQPVINQVVD
       .:.:  :: ::::.:   :::.  :. : .:.    :.:    :  : . :. ... :. 
CCDS83 LHRYDEGN-FFPGSGAPNEVGTGLGEGYNINIAWTGGLDPPMGDVEYLEAFRTIVKPVAK
               810       820       830       840       850         

         250       260         270       280       290        300  
pF1KB7 FYQPTCIVLQCGADSL-G-CDRLGCFNLSIRGHGECVEYVKSFNIPLLVLG-GGGYTVRN
        ..:  .... : :.: :    :: .... .  :. .. . ..    .::.  ::. .  
CCDS83 EFDPDMVLVSAGFDALEGHTPPLGGYKVTAKCFGHLTKQLMTLADGRVVLALEGGHDLTA
     860       870       880       890       900       910         

            310       320        330       340       350       360 
pF1KB7 VARCWTYETSLLVEEAISEEL-PYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQT
       .  : . :.   :.  ...:: : .: . . .:...   ...  :: :.  .:  ..:  
CCDS83 I--CDASEAC--VNALLGNELEPLAEDILHQSPNMNAVISLQKIIEIQS--KYWKSVRMV
     920           930       940       950       960         970   

             370       380       390       400       410       420 
pF1KB7 IFENLKMLNHAPSVQIHDVPADLLTYDRTDEADAEERGPEENYSRPEAPNEFYDGDHDND
                                                                   
CCDS83 AVPRGCALAGAQLQEETETVSALASLTVDVEQPFAQEDSRTAGEPMEEEPAL        
           980       990      1000      1010      1020             

>>CCDS47554.1 HDAC9 gene_id:9734|Hs108|chr7               (1066 aa)
 initn: 245 init1: 105 opt: 322  Z-score: 391.4  bits: 82.8 E(32554): 1.8e-15
Smith-Waterman score: 333; 25.8% identity (54.4% similar) in 388 aa overlap (9-359:637-1012)

                                     10        20            30    
pF1KB7                       MAKTVAYFYDPDVGNFHYGAG----HPMKPHRLALTHS
                                     ::: . . .   :    :: .  :.    :
CCDS47 SRTHSSPAASVLPHPAMDRPLQPGSATGIAYDPLMLKHQCVCGNSTTHPEHAGRIQSIWS
        610       620       630       640       650       660      

           40        50        60        70        80        90    
pF1KB7 LVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDC
        . . :: .:   ..  .:: ...   ::: . ..:  ..: . : .   .    .::: 
CCDS47 RLQETGLLNKCERIQGRKASLEEIQLVHSEHH-SLLYGTNPLDGQKLDPRIL---LGDDS
        670       680       690        700       710          720  

               100       110          120       130                
pF1KB7 PVF----P-GLFEFCSRYTGASLQ--GATQLN-NKICDIAINWAGGL------------H
         :    : : .   :      :.  ::...  . . ..: . :.:             :
CCDS47 QKFFSSLPCGGLGVDSDTIWNELHSSGAARMAVGCVIELASKVASGELKNGFAVVRPPGH
            730       740       750       760       770       780  

          140       150       160          170       180       190 
pF1KB7 HAKKFEASGFCYVNDIVIGILELLKYH---PRVLYIDIDIHHGDGVQEAFYLTDRVMTVS
       ::..  : :::. :...:   . :. .    ..: .:.:.:::.:.:.:::    .. .:
CCDS47 HAEESTAMGFCFFNSVAI-TAKYLRDQLNISKILIVDLDVHHGNGTQQAFYADPSILYIS
            790       800        810       820       830       840 

               200       210       220           230       240     
pF1KB7 FHKY--GNYFFPGTGDMYEVGAESGRYYCLNVPLRDGID----DQSYKHLFQPVINQVVD
       .:.:  :: ::::.:   :::.  :. : .:.    :.:    :  : . :. ... :. 
CCDS47 LHRYDEGN-FFPGSGAPNEVGTGLGEGYNINIAWTGGLDPPMGDVEYLEAFRTIVKPVAK
              850       860       870       880       890       900

         250       260         270       280       290        300  
pF1KB7 FYQPTCIVLQCGADSL-G-CDRLGCFNLSIRGHGECVEYVKSFNIPLLVLG-GGGYTVRN
        ..:  .... : :.: :    :: .... .  :. .. . ..    .::.  ::. .  
CCDS47 EFDPDMVLVSAGFDALEGHTPPLGGYKVTAKCFGHLTKQLMTLADGRVVLALEGGHDLTA
              910       920       930       940       950       960

            310       320        330       340       350       360 
pF1KB7 VARCWTYETSLLVEEAISEEL-PYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQT
       .  : . :.   :.  ...:: : .: . . .:...   ...  :: :.  .:  ..:  
CCDS47 I--CDASEAC--VNALLGNELEPLAEDILHQSPNMNAVISLQKIIEIQS--KYWKSVRMV
                  970       980       990      1000        1010    

             370       380       390       400       410       420 
pF1KB7 IFENLKMLNHAPSVQIHDVPADLLTYDRTDEADAEERGPEENYSRPEAPNEFYDGDHDND
                                                                   
CCDS47 AVPRGCALAGAQLQEETETVSALASLTVDVEQPFAQEDSRTAGEPMEEEPAL        
         1020      1030      1040      1050      1060              




428 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:15:57 2016 done: Fri Nov  4 09:15:57 2016
 Total Scan time:  2.750 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com