GENSCAN 1.0	Date run:  4-Nov-116	Time: 09:06:02

Sequence gi568815597r:39526510_39739625 : 213116 bp : 48.03% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.18 Intr -   2655   2507  149  1  2  119  114    19 0.025   7.55
 1.17 Intr -  15332  15148  185  1  2   85   91    87 0.311   8.13
 1.16 Intr -  19348  19224  125  1  2   70   99    59 0.306   4.58
 1.15 Intr -  35278  35219   60  1  0   35   86    66 0.125   0.03
 1.14 Intr -  35694  35564  131  1  2   90  105    76 0.988   9.91
 1.13 Intr -  35907  35814   94  0  1  113   92    49 0.983   7.34
 1.12 Intr -  37232  37105  128  0  2   95   94    80 0.974   9.70
 1.11 Intr -  37413  37327   87  1  0   84   21    83 0.426   1.14
 1.10 Intr -  38033  37914  120  0  0   89   97     4 0.751   1.87
 1.09 Intr -  38264  38177   88  2  1   87  100    -4 0.634   0.24
 1.08 Intr -  38869  38597  273  1  0   67   94   205 0.984  16.73
 1.07 Intr -  41337  41242   96  0  0   56   62    94 0.859   3.81
 1.06 Intr -  42430  42293  138  1  0   94  110   101 0.999  13.56
 1.05 Intr -  43180  43086   95  2  2   72  113   145 0.999  15.08
 1.04 Intr -  43493  43354  140  1  2   77  111   131 0.988  14.41
 1.03 Intr -  44840  44725  116  2  2  104   65   271 0.999  25.65
 1.02 Intr -  46077  45884  194  1  2  108   92   205 0.999  22.11
 1.01 Init -  49442  49250  193  2  1   79  113   402 0.985  40.93
 1.00 Prom -  50317  50278   40                              -3.26

 2.00 Prom +  56144  56183   40                              -7.76
 2.01 Init +  58240  58379  140  0  2   57   43   129 0.624   4.91
 2.02 Intr +  69900  70058  159  0  0   56   78   124 0.254   7.30
 2.03 Term +  83075  83156   82  2  1   75   51    86 0.007   0.77
 2.04 PlyA +  88034  88039    6                               1.05

 3.06 PlyA -  92593  92588    6                               1.05
 3.05 Term - 100671  99998  674  1  2  121   49   176 0.273  10.92
 3.04 Intr - 103799 103718   82  2  1  127   80    34 0.718   5.71
 3.03 Intr - 105070 104933  138  1  0   49   83   102 0.216   6.46
 3.02 Intr - 106206 106140   67  2  1  104   84     3 0.169   0.41
 3.01 Init - 113116 113037   80  1  2   85   94   146 0.977  15.43
 3.00 Prom - 129895 129856   40                              -3.66

 4.15 PlyA - 129913 129908    6                              -0.45
 4.14 Term - 132977 132612  366  2  0   82   37   264 0.682  15.30
 4.13 Intr - 134754 134570  185  1  2   68   47   427 0.996  36.11
 4.12 Intr - 136925 136803  123  0  0  106  110   225 0.999  27.06
 4.11 Intr - 139141 139012  130  1  1   95   89   313 0.977  32.37
 4.10 Intr - 139727 139560  168  2  0   83  100   330 0.987  33.84
 4.09 Intr - 142701 142625   77  1  2   94   44    40 0.938  -0.57
 4.08 Intr - 143369 143110  260  1  2   71  -28   185 0.846   2.31
 4.07 Intr - 145596 145378  219  2  0   89   67   144 0.236   9.82
 4.06 Intr - 156224 156031  194  2  2  114   -1   330 0.019  24.99
 4.05 Intr - 157643 157428  216  2  0   76   64   627 0.999  57.80
 4.04 Intr - 158102 157933  170  0  2   89   86   381 0.418  37.67
 4.03 Intr - 164661 164556  106  0  1   87   94    -1 0.013   0.19
 4.02 Intr - 168496 168439   58  0  1   98   70    99 0.422   7.99
 4.01 Init - 177152 177091   62  2  2   86   64    52 0.142   3.32
 4.00 Prom - 201801 201762   40                              -1.66

 5.00 Prom + 211336 211375   40                              -3.16
 5.01 Init + 212392 212422   31  0  1   95   80    61 0.375   6.16

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  89795  89650  146  2  2   67   80   121 0.884   6.94
S.002 Init + 117388 117457   70  0  1   96   58    52 0.854   4.34
S.003 Term - 156224 156027  198  2  0  114   43   346 0.979  30.10
S.004 Init + 164822 164890   69  1  0   47   52   127 0.862   4.05
S.005 Term + 165729 165911  183  2  0  127   47    98 0.939   7.14


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:39526510_39739625|GENSCAN_predicted_peptide_1|804_aa
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEK
HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTT
TQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYK
YASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHS
NLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKGEPTAKKGL
VKSSGVHGHQDWEQAGWLHPNPPAFRRRAHDHREFSLHVHPFKGLGFKGSSFHRIIPQFI
CQGSDFTNHGGTRGKSIYKKKFDDENFIFKHTGPGLRRHGTKCPMAHLALMEASKGQDQH
PLLRRKERAQQVHDVVKLTRGRGR

>gi568815597r:39526510_39739625|GENSCAN_predicted_CDS_1|2412_bp
atgaacgctgcggccagcagctaccccatggcctccctgtacgtgggcgacctgcattcg
gacgtcaccgaggccatgctgtacgaaaagttcagccccgcggggcctgtgctgtccatc
cgggtctgccgcgatatgatcacccgccgctccctgggctatgcctacgtcaacttccag
cagccggccgacgctgagcgggctttggacaccatgaactttgatgtgattaagggaaag
ccaatccgcatcatgtggtctcagagggatccctctttgagaaaatctggtgtgggaaac
gtcttcatcaagaacctggacaaatctatagataacaaggcactttatgatactttttct
gcttttggaaacatactgtcctgcaaggtggtgtgtgatgagaacggctctaagggttat
gcctttgtccacttcgagacccaagaggctgccgacaaggccatcgagaagatgaatggc
atgctcctcaatgaccgcaaagtatttgtgggcagattcaagtctcgcaaagagcgggaa
gctgagcttggagccaaagccaaggaattcaccaatgtttatatcaaaaactttggggaa
gaggtggatgatgagagtctgaaagagctattcagtcagtttggtaagaccctaagtgtc
aaggtgatgagagatcccaatgggaaatccaaaggctttggctttgtgagttacgaaaaa
cacgaggatgccaataaggctgtggaagagatgaatggaaaagaaataagtggtaaaatc
atatttgtaggccgtgcacaaaagaaagtagaacggcaggcagagttaaaacggaaattt
gaacagttgaaacaggagagaattagtcgatatcagggggtgaatctctacattaagaac
ttggatgacactattgatgatgagaaattaaggaaagaattttctccttttggatcaatt
accagtgctaaggtaatgctggaggatggaagaagcaaagggtttggcttcgtctgcttc
tcatctcctgaagaagcaaccaaagcagtcactgagatgaatggacgcattgtgggctcc
aagccactatatgttgccctggcccagaggaaggaagagagaaaggctcacctgaccaac
cagtatatgcaacgagtggctggaatgagagcacttcctgccaatgccatcttaaatcag
ttccagcctgcagcgggtggctactttgtgccagcagtcccacaggctcagggaaggcct
ccatattatacacctaaccagttagcacagatgaggcctaatccacgctggcagcaaggt
gggagacctcaaggcttccaaggaatgccaagtgctatacgccagtctgggcctcgtcca
actcttcgccatctggctccaactggtaatgctccggcctctcgtggcctccctactacc
actcagagagtcgggtctgagtgcccggaccgcttggctatggactttggtggggctggt
gccgcccagcaagggctgactgacagctgccagtctggaggcgttcccacagctgtgcag
aacttagcgccacgcgctgctgttgctgctgctgctccccgggctgttgccccctacaaa
tacgcctccagtgtccgcagccctcatcctgccatacagcctctgcaggcaccccagcct
gcggtccatgtgcaggggcaggagccactgactgcctccatgctggctgcagcacccccc
caggaacagaagcagatgctgggagaacgcttgttcccactcatccaaacaatgcattca
aatctggctgggaagatcacgggaatgctgctggagatagacaactctgagctgctgcac
atgttagagtcccccgagtctctccgctccaaggtggatgaagctgtagcagttctacag
gctcatcatgccaagaaagaagctgcccagaagggagagcccactgctaaaaaaggccta
gtcaaatcctcaggtgtacatggacatcaagattgggaacaagccggctggctgcatcca
aaccctcctgcgttccgacgtcgtgcccatgaccacagagaattttctctacatgtgcac
ccatttaaaggactcggcttcaagggaagcagcttccaccgcattatcccccagttcatt
tgccagggcagtgatttcacaaaccacggtggcaccaggggtaagtccatctacaagaag
aaatttgatgatgaaaactttatcttcaaacacacaggaccaggtctgcgcaggcatggc
actaagtgtcccatggcacatttggccctcatggaggcctcaaaagggcaggaccagcac
cctcttctacggaggaaggaacgggcacagcaggtacatgatgtggtcaaattaacaaga
ggcagaggccgg

>gi568815597r:39526510_39739625|GENSCAN_predicted_peptide_2|126_aa
MTKNQILKAETNVENPSSVEIRGMNEENHNCYSPVQVPRLNTGYKDDPWHVDTTQIVAAP
VELGIASASAFEQGAPRCHFAPGLTNDVADPEQKIEEGGKNALILATVAEGREEWGEDDE
TGPAVK

>gi568815597r:39526510_39739625|GENSCAN_predicted_CDS_2|381_bp
atgaccaagaaccagatattaaaagctgaaacaaatgtggaaaatccatcatctgtggag
atcaggggtatgaacgaggagaatcataactgctattctcctgttcaagtccccaggctg
aacactggctacaaagatgatccctggcatgttgacaccactcagattgtggctgcccct
gtggagttaggaattgcctcggcatcagccttcgaacaaggggctccacgctgtcatttt
gcacctggcctcacaaatgatgtagctgatcctgagcagaagattgaggaaggtggaaag
aatgctctaatactggccacggtcgcagaagggagggaagaatggggcgaggacgatgaa
acagggccagcggtgaagtga

>gi568815597r:39526510_39739625|GENSCAN_predicted_peptide_3|346_aa
MKRPKEPSGSDGESDGPIDVGQEGQLSQMARPLSTPSSSQMQARKKHRGIIEKRRRDRIN
SSLSELRRLVPTAFEKQVCDIADCARGNTVWVADKGSSKLEKAEVLQMTVDHLKMLHATG
GTGFFDARALAVDFRSIGFRECLTEVIRYLGVLEGPSSRADPVRIRLLSHLNSYAAEMEP
SPTPTGPLAFPAWPWSFFHSCPGLPALSNQLAILGRVPSPVLPGVSSPAYPIPALRTAPL
RRATGIILPARRNVLPSRGASSTRRARPLERPATPVPVAPSSRAARSSHIAPLLQSSSPT
PPGPTGSAAYVAVPTPNSSSPGPAGRPAGAMLYHSWVSEITEIGAF

>gi568815597r:39526510_39739625|GENSCAN_predicted_CDS_3|1041_bp
atgaagcgacccaaggagccgagcggctccgacggggagtccgacggacccatcgacgtg
ggccaagagggccagctgagccagatggccaggccgctgtccacccccagctcttcgcag
atgcaagccaggaagaaacacagagggatcatagagaaacggcgtcgagaccgcatcaac
agtagcctttctgaattgcgacgcttggtccccactgcctttgagaaacaggtatgtgac
attgctgattgtgctagaggaaatactgtgtgggtggcagataagggctcttccaagctg
gagaaagccgaggtcttgcagatgacggtggatcacttgaaaatgctccatgccactggt
gggacaggattctttgatgcccgagccctggcagttgacttccggagcattggttttcgg
gagtgcctcactgaggtcatcaggtacctgggggtccttgaagggcccagcagccgtgca
gaccccgtccggattcgccttctctcccacctcaacagctacgcagccgagatggagcct
tcgcccacgcccactggccctttggccttccctgcctggccctggtctttcttccatagc
tgtccagggctgccagccctgagcaaccagctcgccatcctgggaagagtgcccagccct
gtcctccccggtgtctcctctcctgcttaccccatcccagccctccgaaccgctcccctt
cgcagagccacaggcatcatcctgccagcccggaggaatgtgctgcccagtcgaggggca
tcttccacccggagggcccgccccctagagaggccagcgacccctgtgcctgtcgccccc
agcagcagggctgccaggagcagccacatcgctcccctcctgcagtcttcctccccaaca
ccccctggtcctacagggtcggctgcttacgtggctgttcccacccccaactcatcctcc
ccagggccagctgggaggccagcgggagccatgctctaccactcctgggtctctgaaatc
actgaaatcggggctttctga

>gi568815597r:39526510_39739625|GENSCAN_predicted_peptide_4|777_aa
MIVKRRNLYRKPFKELNQQERACSFNNVEQVFAKTPSLRTAAATEEPTPGQETPHLSPGP
WVQRRRQSRLLIPSSGPAMGKTNSKLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCPSGI
LNLEEFQQLYIKFFPYGDASKFAQHAFRTFDKNGDGTIDFREFICALSVTSRGSFEQKLN
WAFEMYDLDGDGRITRLEMLEIIEAIYKMVGTVIMMRMNQDGLTPQQRVDKIFKKMDQDK
DDQITLEEFKEAAKSDPSIVLLLQCDMQNPAPATSASTPPPALAGPGQSRSMEPGQPREP
QEPREPGPGAETAAAPVWEEAKIFYDNLAPKKKPKSVKAMHGKITLGWIGKGESGSKPTS
EKAGASLKRKLDECQCCGLSDAEEGMETGDWGSESISAQNPFPPQAPRNRRAQAQLSVMT
PGSAPDSHAGAISLTLKGRESCQHPGFLELRAPRPKPQNAVTIAVSSRALFRMDEEQQIY
TEQGVEEYVRYQLEHENEPFSPGPAFPFVKALEAVNRRLRELYPDSEDVFDIVLMTNNHA
QVGVRLINSINHYDLFIERFCMTGGNSPICYLKAYHTNLYLSADAEKVREAIDEGIAAAT
IFSPSRDVVVSQSQLRVAFDGDAVLFSDESERIVKAHGLDRFFEHEKAHENKPLAQGPLK
GFLEALGRLQKKFYSKGLRLECPIRTYLVTARSAASSGARALKTLRSWGLETDEALFLAG
APKGPLLEKIRPHIFFDDQMFHVAGAQEMGTVAAHVPYGVAQTPRRTAPAKQAPSAQ

>gi568815597r:39526510_39739625|GENSCAN_predicted_CDS_4|2334_bp
atgattgtaaagaggagaaacctctacagaaaaccattcaaggaacttaatcagcaagaa
agagcctgctccttcaacaacgtggaacaggtgtttgccaagactccaagcctgagaaca
gcggcagcaactgaagagcccacccctgggcaggagaccccccacctcagtccaggccca
tgggtgcagagaaggaggcagagccgcctacttatccccagctcaggccccgccatgggg
aagaccaacagcaagctggcccccgaggtgctggaggaccttgttcagaacactgagttc
agcgagcaggagctgaagcagtggtacaagggcttcctgaaggactgccccagcggcatc
ctcaacctggaggagtttcagcagctctacatcaagttcttcccctacggcgacgcctcc
aagttcgcgcagcacgctttccgcaccttcgacaagaacggcgacggcaccatcgacttc
cgggagttcatctgcgccctgtcggtcacctcccgcggcagcttcgagcagaagctcaac
tgggcctttgagatgtacgacctggacggcgacgggcgcatcacgcgcctggagatgctg
gagatcatcgaggcaatctacaagatggtgggcaccgtgatcatgatgcgcatgaaccag
gacgggctcacgccccagcagcgtgtggacaagatcttcaagaagatggaccaggataag
gacgaccagattacattggaggagttcaaggaggcagccaagagtgacccatccattgtg
ttgctgctgcagtgtgacatgcagaacccagccccagccacctccgcgtctacgccgccg
cctgctctggccgggccgggtcagagccggagcatggaacctgggcagccccgggagccc
caggagccccgcgagcccgggccaggagcggagaccgctgcggccccggtctgggaggaa
gccaagattttctacgacaacctcgcgcccaagaagaaacccaaatcggtaaaagcaatg
cacggaaagatcactctgggatggattggaaagggtgagtccggcagcaaacccaccagt
gagaaggctggtgcctctctgaagaggaagctggatgaatgtcaatgctgtggcctgagt
gatgcagaagaagggatggagactggggactggggcagtgaaagcatcagtgctcaaaat
ccatttcctccccaggcaccaaggaaccggagagctcaggcccagttgtcagtcatgacc
cctggatcagcccctgactctcatgccggagccatcagcctgaccctgaaaggcagagag
agctgccagcaccctggtttcctggagctcagagctcccagacccaagcctcagaatgca
gtcaccatcgctgtgtcctcccgagccttgtttcgcatggacgaggagcagcagatctac
acggagcagggcgtggaggagtacgtgcgctaccagctggaacatgagaacgaacccttc
agtcccgggccagccttcccttttgtgaaggctctggaggccgtgaacaggcggctgcgg
gagctgtaccctgatagtgaggacgtcttcgacatcgtcctcatgactaacaaccatgct
caagtgggtgtccgcctcatcaacagtatcaaccactatgacctgttcatcgagaggttc
tgcatgacaggtgggaacagcccgatctgctacctcaaggcctatcacaccaacctctac
ttgtcagccgatgcggaaaaagtgcgagaagccattgatgaggggatcgcagctgccacc
atcttcagccccagcagggatgtggttgtgtcccagagtcagctgcgcgtggccttcgat
ggggacgccgtgctcttctcggacgagtcggagcgcatcgtcaaggcccacgggctggac
cgattcttcgagcatgagaaggcccacgagaacaaacctctggctcagggccccttaaag
ggctttctggaggcactgggtaggttgcagaagaagttctactccaaaggcctgcggctg
gagtgcccaattcgtacctacttggtgacagcacgcagtgcagccagttccggggcccgg
gctctcaagaccctgcgcagctggggcctggagacagatgaagccttgttccttgctgga
gcgcccaagggccctctccttgagaagatccgcccacacatcttctttgatgaccagatg
ttccatgtggctggggctcaggagatgggcactgtggccgcccatgtgccttatggtgtg
gcacagacaccccggcggactgcacctgcaaagcaggccccatctgcacagtag

>gi568815597r:39526510_39739625|GENSCAN_predicted_peptide_5|11_aa
MATTKRVLYVX

>gi568815597r:39526510_39739625|GENSCAN_predicted_CDS_5|33_bp
atggccaccaccaagcgcgtcttgtacgtggnn