Result of FASTA (omim) for pF1KB7621
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7621, 313 aa
  1>>>pF1KB7621 313 - 313 aa - 313 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.3267+/-0.000375; mu= -1.8846+/- 0.024
 mean_var=441.0163+/-88.307, 0's: 0 Z-trim(126.3): 144  B-trim: 0 in 0/61
 Lambda= 0.061073
 statistics sampled from 51779 (51952) to 51779 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.843), E-opt: 0.2 (0.609), width:  16
 Scan time:  7.770

The best scores are:                                      opt bits E(85289)
NP_001256 (OMIM: 600297) homeobox protein CDX-2 [H ( 313) 2189 205.9 8.5e-53
XP_011533177 (OMIM: 600297) PREDICTED: homeobox pr ( 321) 2157 203.1 6.1e-52
XP_011533179 (OMIM: 600297) PREDICTED: homeobox pr ( 273) 1593 153.4   5e-37
XP_011533178 (OMIM: 600297) PREDICTED: homeobox pr ( 281) 1567 151.1 2.5e-36
XP_011533180 (OMIM: 600297) PREDICTED: homeobox pr ( 204)  923 94.2 2.5e-19
XP_011533181 (OMIM: 600297) PREDICTED: homeobox pr ( 196)  906 92.6 6.8e-19
NP_001795 (OMIM: 600746) homeobox protein CDX-1 [H ( 265)  584 64.4 2.8e-10
NP_005184 (OMIM: 300025) homeobox protein CDX-4 [H ( 284)  453 52.9 8.9e-07
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320)  368 45.5 0.00017
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264)  334 42.4  0.0012
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264)  334 42.4  0.0012
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  334 42.7  0.0017
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  334 42.7  0.0017
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  334 42.7  0.0017
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432)  334 42.7  0.0017
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  334 42.7  0.0017
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  334 42.7  0.0017
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  334 42.7  0.0017
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  334 42.7  0.0017
NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301)  322 41.4  0.0027
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288)  319 41.1  0.0032
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269)  313 40.6  0.0044
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224)  309 40.1   0.005
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224)  309 40.1   0.005
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224)  309 40.1   0.005
NP_078777 (OMIM: 142987) homeobox protein Hox-D1 [ ( 328)  308 40.2  0.0068
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251)  305 39.8  0.0069
NP_005513 (OMIM: 142955,601536) homeobox protein H ( 335)  304 39.9  0.0088


>>NP_001256 (OMIM: 600297) homeobox protein CDX-2 [Homo   (313 aa)
 initn: 2189 init1: 2189 opt: 2189  Z-score: 1068.9  bits: 205.9 E(85289): 8.5e-53
Smith-Waterman score: 2189; 100.0% identity (100.0% similar) in 313 aa overlap (1-313:1-313)

               10        20        30        40        50        60
pF1KB7 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 HHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 VKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 ERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVSGSVPGVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVSGSVPGVL
              250       260       270       280       290       300

              310   
pF1KB7 GPTGGVLNPTVTQ
       :::::::::::::
NP_001 GPTGGVLNPTVTQ
              310   

>>XP_011533177 (OMIM: 600297) PREDICTED: homeobox protei  (321 aa)
 initn: 1597 init1: 1288 opt: 2157  Z-score: 1053.5  bits: 203.1 E(85289): 6.1e-52
Smith-Waterman score: 2157; 97.2% identity (97.2% similar) in 321 aa overlap (1-313:1-321)

               10        20        30        40        50        60
pF1KB7 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 HHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQ
              130       140       150       160       170       180

                      190       200       210       220       230  
pF1KB7 --------VKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKI
               ::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ALTSPSSTVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKI
              190       200       210       220       230       240

            240       250       260       270       280       290  
pF1KB7 WFQNRRAKERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WFQNRRAKERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASV
              250       260       270       280       290       300

            300       310   
pF1KB7 SGSVPGVLGPTGGVLNPTVTQ
        ::::::::::::::::::::
XP_011 PGSVPGVLGPTGGVLNPTVTQ
              310       320 

>>XP_011533179 (OMIM: 600297) PREDICTED: homeobox protei  (273 aa)
 initn: 1586 init1: 1586 opt: 1593  Z-score: 785.7  bits: 153.4 E(85289): 5e-37
Smith-Waterman score: 1593; 95.9% identity (97.5% similar) in 243 aa overlap (1-243:1-240)

               10        20        30        40        50        60
pF1KB7 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 HHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 VKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAK
       :::::::::::::::::::::::::::::::::::::::::::::::: .:  :  : :.
XP_011 VKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSER-LKSGF--RTAE
              190       200       210       220        230         

              250       260       270       280       290       300
pF1KB7 ERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVSGSVPGVL
       .:.                                                         
XP_011 QRRGKSTRRSCSSNSSSSHHSRLRRHHSLPSLSQVL                        
       240       250       260       270                           

>>XP_011533178 (OMIM: 600297) PREDICTED: homeobox protei  (281 aa)
 initn: 1478 init1: 1288 opt: 1567  Z-score: 773.2  bits: 151.1 E(85289): 2.5e-36
Smith-Waterman score: 1567; 92.8% identity (94.4% similar) in 251 aa overlap (1-243:1-248)

               10        20        30        40        50        60
pF1KB7 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 HHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQ
              130       140       150       160       170       180

                      190       200       210       220       230  
pF1KB7 --------VKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKI
               :::::::::::::::::::::::::::::::::::::::::::::::: .: 
XP_011 ALTSPSSTVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSER-LKS
              190       200       210       220       230          

            240       250       260       270       280       290  
pF1KB7 WFQNRRAKERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASV
        :  : :..:.                                                 
XP_011 GF--RTAEQRRGKSTRRSCSSNSSSSHHSRLRRHHSLPSLSQVL                
     240         250       260       270       280                 

>>XP_011533180 (OMIM: 600297) PREDICTED: homeobox protei  (204 aa)
 initn: 904 init1: 904 opt: 923  Z-score: 468.1  bits: 94.2 E(85289): 2.5e-19
Smith-Waterman score: 923; 89.2% identity (91.8% similar) in 158 aa overlap (157-313:47-204)

        130       140       150       160       170        180     
pF1KB7 AAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKP-AQQSLGSQVKTRT
                                     ::::.  .  :  :.  :  : .: :::::
XP_011 YSQLQLYKSKRPLGAVSGHRFLRHCAHARESPGGNAADRGEGHRSASALTSPSSTVKTRT
         20        30        40        50        60        70      

         190       200       210       220       230       240     
pF1KB7 KDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKIN
         80        90       100       110       120       130      

         250       260       270       280       290       300     
pF1KB7 KKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVSGSVPGVLGPTGG
       ::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
XP_011 KKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVPGSVPGVLGPTGG
        140       150       160       170       180       190      

         310   
pF1KB7 VLNPTVTQ
       ::::::::
XP_011 VLNPTVTQ
        200    

>>XP_011533181 (OMIM: 600297) PREDICTED: homeobox protei  (196 aa)
 initn: 898 init1: 898 opt: 906  Z-score: 460.2  bits: 92.6 E(85289): 6.8e-19
Smith-Waterman score: 906; 87.9% identity (91.1% similar) in 157 aa overlap (157-313:47-196)

        130       140       150       160       170       180      
pF1KB7 AAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQVKTRTK
                                     ::::.  .  :  :.       ..::::::
XP_011 YSQLQLYKSKRPLGAVSGHRFLRHCAHARESPGGNAADRGEGHRS-------ASVKTRTK
         20        30        40        50        60                

        190       200       210       220       230       240      
pF1KB7 DKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINK
      70        80        90       100       110       120         

        250       260       270       280       290       300      
pF1KB7 KKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVSGSVPGVLGPTGGV
       :::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::
XP_011 KKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVPGSVPGVLGPTGGV
     130       140       150       160       170       180         

        310   
pF1KB7 LNPTVTQ
       :::::::
XP_011 LNPTVTQ
     190      

>>NP_001795 (OMIM: 600746) homeobox protein CDX-1 [Homo   (265 aa)
 initn: 549 init1: 485 opt: 584  Z-score: 305.4  bits: 64.4 E(85289): 2.8e-10
Smith-Waterman score: 744; 49.3% identity (64.9% similar) in 282 aa overlap (1-274:1-238)

               10        20        30              40        50    
pF1KB7 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNF------VSPPQYPDYGGYHVAAAAAAAAN
       :::.:.::::  .::. .: .. :.:.:: .       .::::::...:         ..
NP_001 MYVGYVLDKDSPVYPGPARPAS-LGLGPQAYGPPAPPPAPPQYPDFSSY---------SH
               10        20         30        40                 50

           60        70         80        90       100       110   
pF1KB7 LDSAQSPGPSWPAAYGAPLREDWNG-YAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADY
       .. : .:  .: : . :: ..:: . :.:: :: ::          :::. .... : :.
NP_001 VEPAPAPPTAWGAPFPAP-KDDWAAAYGPGPAAPAA----------SPAS-LAFGPPPDF
               60         70        80                   90        

           120       130       140       150       160       170   
pF1KB7 HPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKP-
        :   :      :. .:    :::     ::  :.        :::.:: .  ::::.  
NP_001 SPVPAP------PGPGP----GLLAQPLGGPGTPS--------SPGAQRPTPYEWMRRSV
      100                 110       120               130       140

            180       190       200       210       220       230  
pF1KB7 AQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKI
       :  . :.. :::::::::::::::::::::::::::::::::::.::::.:::.::::::
NP_001 AAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKI
              150       160       170       180       190       200

            240       250       260       270       280       290  
pF1KB7 WFQNRRAKERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASV
       :::::::::::.::::   ::::::::::        :  ::                  
NP_001 WFQNRRAKERKVNKKK---QQQQQPPQPPMAHDITATPA-GPSLGGLCPSNTSLLATSSP
              210          220       230        240       250      

            300       310   
pF1KB7 SGSVPGVLGPTGGVLNPTVTQ
                            
NP_001 MPVKEEFLP            
        260                 

>>NP_005184 (OMIM: 300025) homeobox protein CDX-4 [Homo   (284 aa)
 initn: 551 init1: 384 opt: 453  Z-score: 242.7  bits: 52.9 E(85289): 8.9e-07
Smith-Waterman score: 549; 39.9% identity (62.7% similar) in 303 aa overlap (1-293:1-283)

               10        20        30        40        50        60
pF1KB7 MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
       :: : ::.:...:::...   :: . :  . ..    : . . . ::: : .  .   . 
NP_005 MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSP-MPASNFAAAPAFSHYMGYPHM
               10        20        30         40        50         

                   70           80        90       100       110   
pF1KB7 PG--PSWPA--AYGAPL---REDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADY
       :.  : ::.  ..:.:    ::::. : :: ... ... .. ... ::::   . : .::
NP_005 PSMDPHWPSLGVWGSPYSPPREDWSVY-PGPSSTMGTVPVNDVTS-SPAA---FCS-TDY
      60        70        80         90       100           110    

           120       130       140       150       160       170   
pF1KB7 HPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPA
         .  :       .. :. :.:   .: :   :     ::.  ::. .:..   :::: .
NP_005 S-NLGPVGGGTSGSSLPGQAGG---SLVPTDAG-----AAKASSPSRSRHSPYAWMRKTV
            120       130          140            150       160    

           180       190       200       210       220       230   
pF1KB7 QQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIW
       : . :   :::::.::::::::::::::::::: .:::::.::.:::..:::::::::::
NP_005 QVT-G---KTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIW
              170       180       190       200       210       220

           240       250       260       270       280          290
pF1KB7 FQNRRAKERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPL---SPVSSLQA
       ::::::::::. :::..: ...            :   :. . ..:  .   .:.   :.
NP_005 FQNRRAKERKMIKKKISQFENSGGSVQSDSDSISPGELPNTFFTTPSAVRGFQPIEIQQV
              230       240       250       260       270       280

              300       310   
pF1KB7 SVSGSVPGVLGPTGGVLNPTVTQ
        ::                    
NP_005 IVSE                   
                              

>>NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [Homo  (320 aa)
 initn: 314 init1: 275 opt: 368  Z-score: 201.6  bits: 45.5 E(85289): 0.00017
Smith-Waterman score: 377; 32.5% identity (53.9% similar) in 271 aa overlap (20-283:62-319)

                          10        20        30        40         
pF1KB7            MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAA
                                     :.:: .  :      :.     .: .::  
NP_002 ADGGPGGGPGYQQPPAPPTQHLPLQQPQLPHAGG-GREPTASYYAPRTAREPAYPAAALY
              40        50        60         70        80        90

      50        60        70        80        90       100         
pF1KB7 AAAANLDSAQSPGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSS
        : .  :.:   :    :. : : .       :    : :.. ::::..   . ..  . 
NP_002 PAHGAADTAYPYGYRGGASPGRPPQ-------PEQPPAQAKGPAHGLHA---SHVLQPQL
              100       110              120       130          140

     110       120       130       140       150       160         
pF1KB7 PADYHPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWM
       :   .:.  :   :..  :::  :.  . . . .:  :   :    :.  :..  .  ::
NP_002 PPPLQPRAVPPAAPRRCEAAP--ATPGVPAGGSAPACPLLLADKSPLGLKGKEPVVYPWM
              150       160         170       180       190        

     170       180       190       200       210       220         
pF1KB7 RKPAQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQ
       .:   .... . .     . :..:: .: ::::::::..::.: ::. :.: :: :::::
NP_002 KKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQ
      200       210       220       230       240       250        

     230       240          250       260           270       280  
pF1KB7 VKIWFQNRRAKERKINK---KKLQQQQQQQPPQPPP--PPPQPPQ--PQPGPLRSVPEPL
       ::::::::: : .: .:    :...... .    ::     : :.  :.: :  :.: : 
NP_002 VKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGKAQTQSPHLHPHPHPSTSTPVPS
      260       270       280       290       300       310        

            290       300       310   
pF1KB7 SPVSSLQASVSGSVPGVLGPTGGVLNPTVTQ
       :                              
NP_002 SI                             
      320                             

>>NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [Homo  (264 aa)
 initn: 327 init1: 284 opt: 334  Z-score: 186.4  bits: 42.4 E(85289): 0.0012
Smith-Waterman score: 334; 32.6% identity (58.6% similar) in 181 aa overlap (106-284:74-252)

          80        90       100       110       120         130   
pF1KB7 DWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPHHHPHHPAA--APSCA
                                     : ..   . : .  ::::..  .   :.  
NP_705 GFQHHHQELYPPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPL
            50        60        70        80        90       100   

           140       150       160       170       180       190   
pF1KB7 SGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQVKTRTKDKYRVVY
       ::   . .:.::. .  :  .  : ....  .  ::.:   .... . .     . :..:
NP_705 SGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAY
           110       120       130       140       150       160   

           200       210       220       230       240       250   
pF1KB7 TDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQ
       : .: :::::::::.::.: ::. :.: .: :::::.:::::::: : .:   ..: . .
NP_705 TRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKK--DHRLPNTK
           170       180       190       200       210         220 

           260       270       280       290       300       310   
pF1KB7 QQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVSGSVPGVLGPTGGVLNPTVTQ
        .. :     :       ::  ..  .  .:                             
NP_705 VRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL                 
             230       240       250       260                     




313 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:00:12 2016 done: Fri Nov  4 09:00:13 2016
 Total Scan time:  7.770 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]
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