GENSCAN 1.0	Date run:  4-Nov-116	Time: 08:57:11

Sequence gi568815595r:45727356_45938052 : 210697 bp : 44.04% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   4698   4796   99  0  0   75  121    43 0.703   5.53
 1.02 Intr +  11223  11316   94  0  1   70  108    21 0.699   2.27
 1.03 Intr +  11426  11518   93  1  0  121   50     5 0.402   0.16
 1.04 Intr +  12232  12289   58  0  1  107  119   -27 0.648   0.76
 1.05 Term +  16178  16314  137  0  2   60   38    85 0.533  -1.12
 1.06 PlyA +  17007  17012    6                               1.05

 2.00 Prom +  18280  18319   40                              -4.96
 2.01 Init +  19642  19722   81  0  0  103   75    87 0.523   8.05
 2.02 Intr +  20353  20524  172  0  1   -4   77   151 0.659   4.32
 2.03 Intr +  20676  20825  150  1  0   83   70    70 0.876   4.83
 2.04 Intr +  24423  24472   50  1  2  110   96   -18 0.245  -0.40
 2.05 Intr +  26467  26603  137  0  2   98  103   -14 0.135   0.47
 2.06 Term +  27032  27074   43  2  1  130   49    41 0.172   1.03
 2.07 PlyA +  29243  29248    6                               1.05

 3.14 PlyA -  29410  29405    6                               1.05
 3.13 Term -  31772  31623  150  2  0  114   50   197 0.996  16.41
 3.12 Intr -  32482  32402   81  1  0   77   69    47 0.619   1.53
 3.11 Intr -  32667  32502  166  2  1   86   70   191 0.948  17.06
 3.10 Intr -  35717  35558  160  0  1   61   78   385 0.958  33.85
 3.09 Intr -  38386  38182  205  1  1   89   76   311 0.999  28.77
 3.08 Intr -  43016  42854  163  1  1   71  107   225 0.955  22.68
 3.07 Intr -  44103  43862  242  0  2   88   74   502 0.675  45.15
 3.06 Intr -  45260  45150  111  2  0  104  102   142 0.998  17.78
 3.05 Intr -  48633  48406  228  0  0  101   81   243 0.933  22.97
 3.04 Intr -  52745  52654   92  0  2  104   99   140 0.421  16.41
 3.03 Intr -  54868  54728  141  2  0   68   96   243 0.990  23.42
 3.02 Intr -  66237  66187   51  1  0  102   81    13 0.215   0.88
 3.01 Init -  69064  68944  121  1  1  106  105   247 0.998  28.55
 3.00 Prom -  69433  69394   40                              -7.06

 4.12 PlyA -  71329  71324    6                               1.05
 4.11 Term -  80021  79841  181  1  1   48   49   101 0.038  -0.72
 4.10 Intr - 100104 100001  104  0  2   26   72   121 0.504   3.27
 4.09 Intr - 101260 101084  177  1  0   63   77   104 0.974   6.92
 4.08 Intr - 105766 105695   72  1  0   93   85    32 0.887   3.00
 4.07 Intr - 106943 106883   61  1  1   88   88    54 0.999   4.14
 4.06 Intr - 108429 108235  195  2  0   79   47   260 0.983  19.53
 4.05 Intr - 110696 110572  125  2  2  125   69    42 0.872   5.38
 4.04 Intr - 114658 114634   25  0  1  107  101    38 0.145   5.03
 4.03 Intr - 127719 127631   89  0  2  100   84     1 0.002  -0.33
 4.02 Intr - 134660 134618   43  1  1   68   75    67 0.025   1.64
 4.01 Init - 146356 146310   47  1  2   96   89    42 0.614   5.25
 4.00 Prom - 162684 162645   40                              -6.56

 5.00 Prom + 163411 163450   40                              -3.36
 5.01 Init + 167579 167599   21  1  0   95   79    22 0.547   1.71
 5.02 Intr + 173455 174394  940  0  1  131   72  1090 0.539 102.45
 5.03 Term + 174777 174976  200  1  2   50   48   150 0.917   4.76
 5.04 PlyA + 176291 176296    6                               1.05

 6.03 PlyA - 176638 176633    6                               1.05
 6.02 Term - 177203 177028  176  0  2   71   47   122 0.758   4.32
 6.01 Init - 178982 178745  238  2  1   64   85   120 0.507   5.63
 6.00 Prom - 181594 181555   40                              -1.66

 7.06 PlyA - 182726 182721    6                               1.05
 7.05 Term - 194485 194410   76  0  1  120   33    75 0.767   2.51
 7.04 Intr - 196410 196301  110  0  2  120   97   242 0.948  27.38
 7.03 Intr - 203926 203716  211  0  1   84  116   289 0.995  30.22
 7.02 Intr - 209188 209093   96  0  0   84   95   111 0.958  10.52
 7.01 Intr - 209359 209245  115  2  1   92   39    52 0.262   0.21

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595r:45727356_45938052|GENSCAN_predicted_peptide_1|160_aa
XYIAFDFHKECKNMRWDRLSILLDQVAEMQDELRTGKRTHLGLIMDGWNSMIRYYKNNFS
DGFRQDSIDLFLGNYSVDELESHSPLSVPRDWKFLALPIIMVVAFSMCIICLLMAGDTWT
ETLAYVLFWGVASIGTFFIILYNGKDFVDAPRLVQKEKID

>gi568815595r:45727356_45938052|GENSCAN_predicted_CDS_1|483_bp
nnatacattgcctttgacttccataaggaatgtaaaaatatgagatgggatcgactaagt
attttattggatcaggtagcagaaatgcaagatgaattaagaactggaaagagaactcat
ttgggacttataatggatggctggaactcaatgatacgatattataagaacaacttttcc
gatggatttagacaagattccatagacttatttcttggaaactattcagtggatgaatta
gaatctcatagtcctttaagtgttccaagggactggaaattcctggctttgcctattatc
atggttgttgccttttcaatgtgcattatctgtttgcttatggctggtgacacttggaca
gaaacactggcctatgtgctcttctggggagttgcaagcattggaacattttttatcatt
ctttacaatggcaaagattttgtcgatgctcccagactggtccagaaagaaaagatagac
tga

>gi568815595r:45727356_45938052|GENSCAN_predicted_peptide_2|210_aa
MGPARNLNPYPRLRGGMARAACTSMEQELNTYRNTLAAERRYSLQVSSELFYHSIKLLFI
LLILHLSTYFILPGHRTRTQDPPNVPSISKLLGTTVFRTGSRGSCLHACLVQLQPCREPA
PMPALGAAYPTAAAGPLYLWVLGLSILIYLPVTGYFHLIHRHLKLHMVKPLLIFTLQASS
VPHFPHLRKWHQHPPSRAFAVAVTSPGQAF

>gi568815595r:45727356_45938052|GENSCAN_predicted_CDS_2|633_bp
atgggcccagcaaggaacctgaacccctaccccagactgcgaggaggcatggccagagcc
gcctgcacgtccatggagcaggagctgaacacttatcggaacaccctggctgcggaaagg
aggtactccctgcaggtctcctctgagctgttctatcactcgataaagctcctcttcatc
ttgctcatcctccacttgtccacatacttcattcttcctggccacaggacaagaactcag
gacccgccaaatgttcctagcatctctaagcttctgggcactaccgtcttccgcactggc
agccgtggaagctgcttgcatgcatgcctggtccagctgcagccttgcagagagcccgca
cccatgccagcacttggagctgcctaccccactgcagcagctggtccgctctacttgtgg
gtgttggggctttctattctcatctatttgccggttactggatatttccacctaattcac
agacatctcaaacttcacatggtcaaaccactcttgatttttactctgcaggccagctct
gttccccactttcctcatctccggaaatggcaccagcatccccccagcagggcctttgca
gttgctgtcacctctcctggacaggccttctag

>gi568815595r:45727356_45938052|GENSCAN_predicted_peptide_3|636_aa
MEKARPLWANSLQFVFACISYAVGLGNVWRFPYLCQMYGGGQARPGMRNVNSEDYIPGSF
LVPYIIMLIVEGMPLLYLELAVGQRMRQGSIGAWRTISPYLSGVGVASVVVSFFLSMYYN
VINAWAFWYLFHSFQDPLPWSVCPLNGNHTGYDEECEKASSTQYFWYRKTLNISPSLQEN
GGVQWEPALCLLLAWLVVYLCILRGTESTGKVVYFTASLPYCVLIIYLIRGLTLHGATNG
LMYMFTPKIEQLANPKAWINAATQIFFSLGLGFGSLIAFASYNEPSNNCQKHAIIVSLIN
SFTSIFASIVTFSIYGFKATFNYENCLKKVSLLLTNTFDLEDGFLTASNLEQVKGYLASA
YPSKYSEMFPQIKNCSLESELDTAVQGTGLAFIVYTEAIKNMEVSQLWSVLYFFMLLMLG
IGSMLGNTAAILTPLTDSKIISSHLPKEAISGLVCLVNCAIGMVFTMEAGNYWFDIFNDY
AATLSLLLIVLVETIAVCYVYGLRRFESDLKAMTGRAVSWYWKVMWAGVSPLLIVSLFVF
YLSDYILTGTLKYQAWDASQGWRWAPMATEKHGPFIFRNQGTISMVWGQLVTKDYPAYAL
AVIGLLVASSTMCIPLAALGTFVQRRLKRGDADPVA

>gi568815595r:45727356_45938052|GENSCAN_predicted_CDS_3|1911_bp
atggagaaagcgcggccgctgtgggccaactcgctacagttcgtgttcgcctgcatctcg
tacgccgtgggcctgggcaacgtgtggcgattcccgtacctgtgccagatgtacggcgga
ggccaggcccggcccggcatgaggaatgttaattctgaagattacattccaggtagtttc
ctggtcccctacatcatcatgcttatcgtggagggaatgccgctcttgtacctggaactg
gctgtggggcagcgcatgcggcagggcagcatcggcgcctggaggaccatcagcccgtac
ctcagtggtgtcggggtcgccagcgtggtggtctctttcttcctctccatgtactacaac
gtcatcaacgcctgggccttctggtacctcttccactccttccaggatcccctgccgtgg
tctgtctgcccactgaatggtaaccacacgggctacgatgaggagtgtgagaaggcgtcc
tccacacagtacttctggtacaggaaaaccctcaatatctcgccgtccctccaggagaac
gggggtgtgcagtgggagccggcgctgtgcctcctcctggcctggctggtggtgtacctg
tgcatcctgcgtggcaccgagtccactggcaaggtggtgtatttcacggcgtcactgccc
tattgcgtgctcatcatctacctcatcaggggcctcacgctccacggagccaccaatggc
ctcatgtacatgttcactcccaagatagagcagctggccaaccccaaggcctggatcaat
gcagccacccagatcttcttctcacttggcctgggcttcggcagcctgatcgccttcgcc
agctacaatgagccatccaacaactgccagaagcacgccatcatcgtgtccctcatcaac
agcttcacctccatatttgccagcattgtcaccttctccatctatggcttcaaggccacc
ttcaattatgaaaactgcttgaagaaggtgagtctgctgctgaccaacacttttgacctt
gaagatggctttttgacagccagcaacctggagcaggtgaagggctacctcgcatctgcc
tacccaagcaaatacagcgagatgttcccgcaaatcaaaaactgcagcttggaatcggag
ctagacacggccgtccagggcactggcctggcattcatcgtctacacagaggccattaaa
aacatggaggtgtcccagctgtggtcggtgctctacttcttcatgctgctgatgctgggc
attgggagcatgctggggaacacagcggccatcctcacccctctgacagacagcaagatc
atctccagccacctgcccaaggaggccatctcaggtctggtgtgccttgtcaactgtgcc
attggcatggtgttcacgatggaggctgggaactactggtttgacatattcaacgactac
gcggccacactgtccctgctgctcatcgtgctggtggagacgattgccgtgtgctacgtg
tacgggctgaggagatttgaaagtgaccttaaggccatgaccggccgagctgtgagctgg
tactggaaggtgatgtgggctggcgtaagcccactgctgattgtcagcctctttgtcttc
tacctgagcgactacatcctcacggggaccctgaagtatcaagcctgggacgcctcccag
ggctggcgctgggcccccatggccactgaaaagcatgggccattcattttccgaaaccag
gggactatttccatggtgtggggccagctcgtgaccaaagattacccggcctatgcactg
gctgtcatcgggctgcttgtggcctcctccaccatgtgcatccccctggcggccctgggg
acttttgttcagcgtcgcctcaagaggggagacgcagaccccgtggcctga

>gi568815595r:45727356_45938052|GENSCAN_predicted_peptide_4|372_aa
MEVFQRKEDFIDELLWKNELHKNDKDNDHQGRQRKSIKLYPTHPLVTFPRSWAKFQEKAL
LPPLPAAMAELGLNEHHQNEVINYMRFARSKRGLRLKTVDSCFQDLKESRLVEDTFTIDE
VSEVLNGLQAVVHSEVESELINTAYTNVLLLRQLFAQAEKWYLKLQTDISELENRELLEQ
VAEFEKAEITSSNKKPILDVTKPKLAPLNEGGTAELLNKDFIKAQDLSNLENTVAALKSE
FQKTLNDKTENQKSLEENLATAKHDLLRVQEQLHMAEKELEKKFQQTAAYRNMKEILTKK
NDQIKDLRKRLAQSVARNRATATQSCSLQLPTQCQFCAAMLPSALASSSSDPGGSLRLVI
FAKYSKLLGIAQ

>gi568815595r:45727356_45938052|GENSCAN_predicted_CDS_4|1119_bp
atggaggtcttccagagaaaagaggactttatagatgagctgttatggaaaaatgagctc
cataagaatgacaaagataatgaccaccagggaaggcagagaaaatccatcaagttgtac
cctacccaccctttggtgacttttccaagaagctgggctaagttccaggagaaagctctg
ctgccgccgctgcctgccgccatggcagagttgggcctaaatgagcaccatcaaaatgaa
gttattaattatatgcgttttgctcgttcaaagagaggcttgagactcaaaactgtagat
tcctgcttccaagacctcaaggagagcaggctggtggaggacaccttcaccatagatgaa
gtctctgaagtcctcaatggattacaagctgtggttcatagtgaggtggaatctgagctc
atcaacactgcctataccaatgtgttacttctgcgacagctgtttgcacaagctgagaag
tggtatcttaagctacagacagacatctctgaacttgaaaaccgagaattattagaacaa
gttgcagaatttgaaaaagcagagattacatcttcaaacaaaaagcccatcttagatgtc
acaaagccaaaacttgctccacttaatgaaggtggaacagcagaactcctaaacaaggat
tttataaaggcccaagacttaagtaacttagaaaacactgtcgctgccttaaagagtgag
tttcagaagacacttaatgacaagacagaaaaccagaagtcactggaggagaatctggcg
acagccaagcacgatctactcagggttcaggagcagctgcacatggctgaaaaggaatta
gaaaagaaatttcagcaaacagcagcttatcgaaacatgaaagagattcttaccaagaag
aatgaccaaatcaaagatctgaggaaaagactggcacaaagtgtagccagaaacagagcc
acagcaacacagagctgtagcctgcagctgccaacccagtgccagttctgtgcagccatg
ttgccttcagctctggccagcagttcctccgatcctggaggctctctgcgtcttgttata
tttgccaaatattctaaattgcttggaatagctcagtga

>gi568815595r:45727356_45938052|GENSCAN_predicted_peptide_5|386_aa
MTPTDFTSPIPNMADDYGSESTSSMEDYVNFNFTDFYCEKNNVRQFASHFLPPLYWLVFI
VGALGNSLVILVYWYCTRVKTMTDMFLLNLAIADLLFLVTLPFWAIAAADQWKFQTFMCK
VVNSMYKMNFYSCVLLIMCISVDRYIAIAQAMRAHTWREKRLLYSKMVCFTIWVLAAALC
IPEILYSQIKEESGIAICTMVYPSDESTKLKSAVLTLKVILGFFLPFVVMACCYTIIIHT
LIQAKKSSKHKALKVTITVLTVFVLSQFPYNCILLVQTIDAYAMFISNCAVSTNIDICFQ
VTQTIAFFHSCLNPVLYVFVGGLRTGTVEHPGFATRRSINAAASGGALGFSPCTVNFCGF
SSHAASSKRGHRSTGCCYRPQKQKVS

>gi568815595r:45727356_45938052|GENSCAN_predicted_CDS_5|1161_bp
atgacacccacagacttcacaagccctattcctaacatggctgatgactatggctctgaa
tccacatcttccatggaagactacgttaacttcaacttcactgacttctactgtgagaaa
aacaatgtcaggcagtttgcgagccatttcctcccacccttgtactggctcgtgttcatc
gtgggtgccttgggcaacagtcttgttatccttgtctactggtactgcacaagagtgaag
accatgaccgacatgttccttttgaatttggcaattgctgacctcctctttcttgtcact
cttcccttctgggccattgctgctgctgaccagtggaagttccagaccttcatgtgcaag
gtggtcaacagcatgtacaagatgaacttctacagctgtgtgttgctgatcatgtgcatc
agcgtggacaggtacattgccattgcccaggccatgagagcacatacttggagggagaaa
aggcttttgtacagcaaaatggtttgctttaccatctgggtattggcagctgctctctgc
atcccagaaatcttatacagccaaatcaaggaggaatccggcattgctatctgcaccatg
gtttaccctagcgatgagagcaccaaactgaagtcagctgtcttgaccctgaaggtcatt
ctggggttcttccttcccttcgtggtcatggcttgctgctataccatcatcattcacacc
ctgatacaagccaagaagtcttccaagcacaaagccctaaaagtgaccatcactgtcctg
accgtctttgtcttgtctcagtttccctacaactgcattttgttggtgcagaccattgac
gcctatgccatgttcatctccaactgtgccgtttccaccaacattgacatctgcttccag
gtcacccagaccatcgccttcttccacagttgcctgaaccctgttctctatgtttttgtg
ggaggactaaggaccggcactgtggagcaccctggctttgccactcgccggagcatcaat
gccgctgcctctggaggagcccttggattttctccatgcactgtgaacttctgtggcttc
agttctcatgctgcctcttccaaaaggggacacagaagcactggctgctgctacagaccg
caaaagcagaaagtttcgtga

>gi568815595r:45727356_45938052|GENSCAN_predicted_peptide_6|137_aa
MVLKILGGIVAVLYTMGPLACSWCPSISAECLGYNETGPMLSAFSEEFCDWRPTTLWISC
IPSVLTHPALGGLLELAAPGLSVTTTMGKEEVIATQLSQELCQLSQDAIRATHKAKALDT
KAGKSIGVQSWSSQFLP

>gi568815595r:45727356_45938052|GENSCAN_predicted_CDS_6|414_bp
atggtgctcaaaattctgggaggtatcgtggctgtcttatacaccatggggcccctggca
tgcagctggtgcccaagcatatctgctgaatgcttaggttataatgagacaggacccatg
ctctcagccttctcagaggagttctgtgactggcgcccaaccacactatggatctcctgc
atacccagtgttcttacccatccagccttaggtgggctcttggaattggcagcccctgga
ctctctgtaacaactacaatgggcaaagaagaagttatagccactcagctctctcaggag
ctgtgtcagctctctcaggatgcaatcagggcaactcacaaggccaaagccttggacacc
aaagctgggaaaagcattggcgtccagtcctggtctagtcagttccttccttga

>gi568815595r:45727356_45938052|GENSCAN_predicted_peptide_7|202_aa
XLPLPTKSARVSVMASMIKGSPMHLDLAACDSKTADPRMDTTSTSLTPEDTEDMPVGQDS
EICLLKSGELMIKVPLTVDEIASFGEGSRELFVRSSTYSLIPITVAEAGLTISWVFSSDP
KSISFSVVFQEAEDTPLDQCKVLIPTTRCNSHKENIQGQLKVRTPGIYMLIFDNTFSRFV
SKKVFYHLTVDRPVIYDGSDFL

>gi568815595r:45727356_45938052|GENSCAN_predicted_CDS_7|609_bp
nccctccctctacccacaaaatctgccagggtctctgtcatggcctctatgattaaagga
tcccccatgcatctggatttggctgcctgtgactccaagactgcggaccccaggatggat
actacatcaacctcgctaacgcctgaggacactgaagacatgcccgtggggcaggattcg
gaaatctgcctgctgaagtctggagaactgatgatcaaagtacccctcacagtggatgag
atcgccagcttcggggagggtagcagggagctgtttgtgaggtccagcacctacagcctg
atccccatcactgtggccgaggcaggcctcaccatcagctgggtcttctcctctgacccc
aagagcatctccttcagtgtggtcttccaggaggccgaggacacaccgctggatcagtgt
aaggtcctcattcccacgacccgatgcaactcccacaaggagaacatccagggccagctc
aaggttcgcacacccggcatctacatgctcatcttcgacaataccttctcaaggtttgtc
tctaaaaaggtattttatcacttgacggttgatcggcctgtgatctacgatggaagtgat
ttcctgtag