Result of FASTA (omim) for pF1KB7586
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7586, 288 aa
  1>>>pF1KB7586 288 - 288 aa - 288 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8172+/-0.000299; mu= 12.7757+/- 0.019
 mean_var=205.5969+/-40.464, 0's: 0 Z-trim(124.4): 157  B-trim: 517 in 1/57
 Lambda= 0.089447
 statistics sampled from 45877 (46096) to 45877 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.833), E-opt: 0.2 (0.54), width:  16
 Scan time:  8.940

The best scores are:                                      opt bits E(85289)
NP_115887 (OMIM: 300447) rhox homeobox family memb ( 288) 1998 269.3 6.2e-72
XP_005262541 (OMIM: 300447) PREDICTED: rhox homeob ( 166) 1083 150.9 1.6e-36
NP_703149 (OMIM: 300154) homeobox protein ESX1 [Ho ( 406)  402 63.5 7.7e-10
NP_644811 (OMIM: 300446) rhox homeobox family memb ( 184)  273 46.4 4.8e-05
XP_011529583 (OMIM: 300446) PREDICTED: rhox homeob ( 212)  273 46.5 5.3e-05
NP_057391 (OMIM: 604675) paired mesoderm homeobox  ( 253)  273 46.6 5.9e-05
NP_115485 (OMIM: 604529) homeobox protein orthoped ( 325)  273 46.7 6.9e-05
XP_016870292 (OMIM: 604675) PREDICTED: paired meso ( 193)  266 45.5 9.3e-05
NP_620689 (OMIM: 300004,300215,300382,300419,30835 ( 562)  261 45.5 0.00028
NP_008833 (OMIM: 167420,202650) paired mesoderm ho ( 217)  248 43.3  0.0005
NP_073207 (OMIM: 167420,202650) paired mesoderm ho ( 245)  246 43.1 0.00065
XP_006711451 (OMIM: 167420,202650) PREDICTED: pair ( 198)  242 42.4 0.00081
NP_001297089 (OMIM: 106210,120430,136520,148190,16 ( 286)  241 42.5  0.0011
NP_001297090 (OMIM: 106210,120430,136520,148190,16 ( 286)  241 42.5  0.0011
NP_001121084 (OMIM: 106210,120430,136520,148190,16 ( 422)  241 42.7  0.0014
NP_001245394 (OMIM: 106210,120430,136520,148190,16 ( 422)  241 42.7  0.0014
NP_001245393 (OMIM: 106210,120430,136520,148190,16 ( 422)  241 42.7  0.0014
NP_000271 (OMIM: 106210,120430,136520,148190,16555 ( 422)  241 42.7  0.0014
NP_001245392 (OMIM: 106210,120430,136520,148190,16 ( 436)  241 42.8  0.0014
NP_001245391 (OMIM: 106210,120430,136520,148190,16 ( 436)  241 42.8  0.0014
NP_001297087 (OMIM: 106210,120430,136520,148190,16 ( 436)  241 42.8  0.0014
NP_001595 (OMIM: 106210,120430,136520,148190,16555 ( 436)  241 42.8  0.0014
NP_006483 (OMIM: 136760,606014) homeobox protein a ( 343)  236 42.0  0.0019
NP_068745 (OMIM: 605420,609597,613451,615529) home ( 411)  237 42.2   0.002
NP_852126 (OMIM: 122880,148820,193500,268220,60659 ( 403)  234 41.8  0.0026
NP_852125 (OMIM: 122880,148820,193500,268220,60659 ( 407)  234 41.8  0.0026
NP_852122 (OMIM: 122880,148820,193500,268220,60659 ( 479)  234 41.9  0.0028
NP_001120838 (OMIM: 122880,148820,193500,268220,60 ( 483)  234 41.9  0.0029
NP_852123 (OMIM: 122880,148820,193500,268220,60659 ( 484)  234 41.9  0.0029
NP_852124 (OMIM: 122880,148820,193500,268220,60659 ( 505)  234 41.9  0.0029
NP_001297088 (OMIM: 106210,120430,136520,148190,16 ( 401)  227 40.9  0.0048
NP_116142 (OMIM: 605726,610362,610381,613757) reti ( 184)  221 39.7  0.0051
NP_000316 (OMIM: 137600,180500,180550,601542,60422 ( 324)  224 40.4  0.0055
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346)  224 40.4  0.0057
NP_001306003 (OMIM: 605726,610362,610381,613757) r ( 230)  221 39.8  0.0058
NP_002440 (OMIM: 123101,168500,168550,604757) home ( 267)  221 39.9  0.0064
NP_006875 (OMIM: 602504) short stature homeobox pr ( 331)  221 40.0  0.0073
XP_011530329 (OMIM: 137600,180500,180550,601542,60 ( 271)  219 39.7  0.0077
NP_700476 (OMIM: 137600,180500,180550,601542,60422 ( 271)  219 39.7  0.0077
NP_001191328 (OMIM: 137600,180500,180550,601542,60 ( 271)  219 39.7  0.0077
NP_001157150 (OMIM: 602504) short stature homeobox ( 319)  220 39.9  0.0078
XP_011537084 (OMIM: 601527,613456) PREDICTED: ALX  ( 231)  217 39.3  0.0083
NP_006252 (OMIM: 262600,601538) homeobox protein p ( 226)  216 39.2   0.009


>>NP_115887 (OMIM: 300447) rhox homeobox family member 2  (288 aa)
 initn: 1998 init1: 1998 opt: 1998  Z-score: 1412.4  bits: 269.3 E(85289): 6.2e-72
Smith-Waterman score: 1998; 100.0% identity (100.0% similar) in 288 aa overlap (1-288:1-288)

               10        20        30        40        50        60
pF1KB7 MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 KSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGDLEGTSGSDGNVEDSDQSEKEPGQQYSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 KSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGDLEGTSGSDGNVEDSDQSEKEPGQQYSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PQGAVGGLEPGNAQQPNVHAFTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 PQGAVGGLEPGNAQQPNVHAFTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 WFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 WFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSS
              190       200       210       220       230       240

              250       260       270       280        
pF1KB7 SLCFPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFPNV
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 SLCFPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFPNV
              250       260       270       280        

>>XP_005262541 (OMIM: 300447) PREDICTED: rhox homeobox f  (166 aa)
 initn: 1083 init1: 1083 opt: 1083  Z-score: 776.9  bits: 150.9 E(85289): 1.6e-36
Smith-Waterman score: 1083; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159)

               10        20        30        40        50        60
pF1KB7 MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 KSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGDLEGTSGSDGNVEDSDQSEKEPGQQYSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGDLEGTSGSDGNVEDSDQSEKEPGQQYSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PQGAVGGLEPGNAQQPNVHAFTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQI
       :::::::::::::::::::::::::::::::::::::::                     
XP_005 PQGAVGGLEPGNAQQPNVHAFTPLQLQELERIFQREQFPKGGWQEA              
              130       140       150       160                    

              190       200       210       220       230       240
pF1KB7 WFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSS

>>NP_703149 (OMIM: 300154) homeobox protein ESX1 [Homo s  (406 aa)
 initn: 432 init1: 264 opt: 402  Z-score: 297.7  bits: 63.5 E(85289): 7.7e-10
Smith-Waterman score: 409; 33.1% identity (56.4% similar) in 275 aa overlap (20-281:21-271)

                10        20        30        40        50         
pF1KB7  MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEK
                           .: .:..: .  : ::  .  :.::... .:: :: : ..
NP_703 MESLRGYTHSDIGYRSLAVGEDIEEVNDEKLTVTSLMARGGEDEENTRSKPEYGTEAENN
               10        20        30        40        50        60

      60        70        80        90           100       110     
pF1KB7 LKSAGAQGGEEKDGGGEEKDGGGAGVPGHLWE----GDLEGTSGSDGNVEDSDQSEKEPG
       . . :.  ....:     ..:::.  : .  :       :  .     .: ....:. : 
NP_703 VGTEGSVPSDDQD-----REGGGGHEPEQQQEEPPLTKPEQQQEEPPLLELKQEQEEPPQ
               70             80        90       100       110     

         120            130       140       150       160       170
pF1KB7 QQYSRPQGAVG-----GLEPGNAQQPNVHAFTPLQLQELERIFQREQFPSEFLRRRLARS
            :: : :     : .: . ..    ::: .:::::: .:.. :.:.   :.:::  
NP_703 TTVEGPQPAEGPQTAEGPQPPERKRRRRTAFTQFQLQELENFFDESQYPDVVARERLAAR
         120       130       140       150       160       170     

              180       190       200       210       220          
pF1KB7 MNVTELAVQIWFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPL--FISGM
       .:.::  ::.::.::::::.:.::.:: ::             ::.  .. ::  :..: 
NP_703 LNLTEDRVQVWFQNRRAKWKRNQRVLMLRN-------------TATADLAHPLDMFLGGA
         180       190       200                    210       220  

      230       240        250        260       270       280      
pF1KB7 RDDYFWDHSHSSSLCFPM-PPFP-PPSLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFP
          :.   . . .::  . : .: :: ::.: :  :: ::       : :.. .:     
NP_703 ---YYAAPALDPALCVHLVPQLPRPPVLPVPPM--PPRPPMVPMPPRP-PIAPMPPMAPV
               230       240       250         260        270      

                                                                   
pF1KB7 NV                                                          
                                                                   
NP_703 PPGSRMAPVPPGPRMAPVPPWPPMAPVPPWPPMAPVPTGPPMAPVPPGPPMARVPPGPPM
        280       290       300       310       320       330      

>>NP_644811 (OMIM: 300446) rhox homeobox family member 1  (184 aa)
 initn: 250 init1: 213 opt: 273  Z-score: 211.5  bits: 46.4 E(85289): 4.8e-05
Smith-Waterman score: 275; 36.9% identity (61.2% similar) in 160 aa overlap (48-202:23-171)

        20        30        40        50         60          70    
pF1KB7 AVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAG-EKLKSAGAQG--GEEKDGG
                                     : :. :.:.. :   . :: :  :. .  :
NP_644         MARSLVHDTVFYCLSVYQVKISPTPQLGAASSAEGHVGQGAPGLMGNMNPEG
                       10        20        30        40        50  

           80        90       100       110       120       130    
pF1KB7 GEEKDGGGAGVPGHLWEGDLEGTSGSDGNVEDSDQSEKEPGQQYSRPQGAVGGLEPGNAQ
       : ....:     : . ::       . :: :  .: .  : .     :.:. : .: : .
NP_644 GVNHENGMNRDGGMIPEG-------GGGNQEPRQQPQPPPEEP---AQAAMEGPQPEN-M
             60        70               80           90       100  

            140       150       160       170       180       190  
pF1KB7 QPNVH--AFTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRRAKWRRH
       :: ..   :: ::..::: .:.. :.:.   ::.::....:::  :..::.:.::. :::
NP_644 QPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRH
             110       120       130       140       150       160 

            200       210       220       230       240       250  
pF1KB7 QRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSSSLCFPMPPFPPP
       :: ::  : :                                                  
NP_644 QRELMLANELRADPDDCVYIVVD                                     
             170       180                                         

>>XP_011529583 (OMIM: 300446) PREDICTED: rhox homeobox f  (212 aa)
 initn: 250 init1: 213 opt: 273  Z-score: 210.8  bits: 46.5 E(85289): 5.3e-05
Smith-Waterman score: 275; 36.9% identity (61.2% similar) in 160 aa overlap (48-202:51-199)

        20        30        40        50         60          70    
pF1KB7 AVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAG-EKLKSAGAQG--GEEKDGG
                                     : :. :.:.. :   . :: :  :. .  :
XP_011 VQGRSAPAMARSLVHDTVFYCLSVYQVKISPTPQLGAASSAEGHVGQGAPGLMGNMNPEG
               30        40        50        60        70        80

           80        90       100       110       120       130    
pF1KB7 GEEKDGGGAGVPGHLWEGDLEGTSGSDGNVEDSDQSEKEPGQQYSRPQGAVGGLEPGNAQ
       : ....:     : . ::       . :: :  .: .  : .     :.:. : .: : .
XP_011 GVNHENGMNRDGGMIPEG-------GGGNQEPRQQPQPPPEEP---AQAAMEGPQPEN-M
               90              100       110          120          

            140       150       160       170       180       190  
pF1KB7 QPNVH--AFTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRRAKWRRH
       :: ..   :: ::..::: .:.. :.:.   ::.::....:::  :..::.:.::. :::
XP_011 QPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRH
     130       140       150       160       170       180         

            200       210       220       230       240       250  
pF1KB7 QRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSSSLCFPMPPFPPP
       :: ::  : :                                                  
XP_011 QRELMLANELRADPDDCVYIVVD                                     
     190       200       210                                       

>>NP_057391 (OMIM: 604675) paired mesoderm homeobox prot  (253 aa)
 initn: 251 init1: 233 opt: 273  Z-score: 210.0  bits: 46.6 E(85289): 5.9e-05
Smith-Waterman score: 281; 31.7% identity (57.6% similar) in 205 aa overlap (51-253:47-218)

               30        40        50        60        70        80
pF1KB7 DEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKLKSAGAQGGEEKDGGGEEKDG
                                     :. .:::.     ::.. : ..:...: .:
NP_057 PGPPPPPPALGPGDCAQARKNFSVSHLLDLEEVAAAGRLAARPGARA-EAREGAAREPSG
         20        30        40        50        60         70     

               90       100       110       120       130       140
pF1KB7 GGAGVPGHLWEGDLEGTSGSDGNVEDSDQSEKEPGQQYSRPQGAVGGLEPGNAQQPNVHA
       :               .:::..  .:..      :.  .: .           :. :  .
NP_057 G---------------SSGSEAAPQDGECPSPGRGSAAKRKK----------KQRRNRTT
                         80        90       100                 110

              150       160       170       180       190          
pF1KB7 FTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRRAKWRRHQRALMA-R
       :.  ::: :::.:.: ..:. :.:..::: .:..:  ::.::.:::::.::..::..: :
NP_057 FNSSQLQALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFRRNERAMLASR
              120       130       140       150       160       170

     200       210       220       230        240       250        
pF1KB7 NMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYF-WDHSHSSSLCFPMPPFPPPSLPLPL
       .   . . .: .   : :  .::   ...  ::. :  :   :    .::. : :     
NP_057 SASLLKSYSQEA---AIEQPVAPR-PTALSPDYLSWTASSPYST---VPPYSPGSSGPAT
              180          190        200       210          220   

      260       270       280        
pF1KB7 MLLPPMPPAGQAEFGPFPFVIVPSFTFPNV
                                     
NP_057 PGVNMANSIASLRLKAKEFSLHHSQVPTVN
           230       240       250   

>>NP_115485 (OMIM: 604529) homeobox protein orthopedia [  (325 aa)
 initn: 245 init1: 221 opt: 273  Z-score: 208.8  bits: 46.7 E(85289): 6.9e-05
Smith-Waterman score: 273; 30.0% identity (60.6% similar) in 203 aa overlap (58-248:25-224)

        30        40        50        60        70        80       
pF1KB7 MNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKLKSAGAQGGEEKDGGGEEKDGGGAGVP-
                                     : .:   . ::  .: ::.  : .  . : 
NP_115       MLSHADLLDARLGMKDAAELLGHREAVKCRLGVGG--SDPGGHPGDLAPNSDPV
                     10        20        30          40        50  

           90        100       110        120       130       140  
pF1KB7 --GHLWEG-DLEGTSGSDGNVEDSDQS-EKEPGQQYSRPQGAVGGLEPGNAQQPNVHA-F
         . :  : :.  .... ...  : .. .:.:: : . :. . .: . :. .:   .. :
NP_115 EGATLLPGEDITTVGSTPASLAVSAKDPDKQPGPQGG-PNPSQAGQQQGQQKQKRHRTRF
             60        70        80         90       100       110 

             150       160       170       180       190           
pF1KB7 TPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRRAKWRRHQRALMAR--
       :: ::.:::: : . ..:. :.:..::  ...::  ::.::.::::::......  .   
NP_115 TPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKTTNVFRA
             120       130       140       150       160       170 

       200        210       220       230       240        250     
pF1KB7 --NMLPFMAVGQ-PVMVTAAEAITAPLFISGMRDDYFWDHSHSSSLC-FPMPPFPPPSLP
         ..::  .. : :  ..:: :  .  . :   .:  :  .   ..  .:.::       
NP_115 PGTLLPTPGLPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPGVSQLPLPPALGRQQA
             180       190       200       210       220       230 

         260       270       280                                   
pF1KB7 LPLMLLPPMPPAGQAEFGPFPFVIVPSFTFPNV                           
                                                                   
NP_115 MAQSLSQCSLAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGMVPASLPGPSNVSGSP
             240       250       260       270       280       290 

>>XP_016870292 (OMIM: 604675) PREDICTED: paired mesoderm  (193 aa)
 initn: 251 init1: 233 opt: 266  Z-score: 206.4  bits: 45.5 E(85289): 9.3e-05
Smith-Waterman score: 266; 39.3% identity (66.4% similar) in 122 aa overlap (134-253:44-158)

           110       120       130       140       150       160   
pF1KB7 VEDSDQSEKEPGQQYSRPQGAVGGLEPGNAQQPNVHAFTPLQLQELERIFQREQFPSEFL
                                     :. :  .:.  ::: :::.:.: ..:. :.
XP_016 GHRLKVTELGCGEGECPSPGRGSAAKRKKKQRRNRTTFNSSQLQALERVFERTHYPDAFV
            20        30        40        50        60        70   

           170       180       190        200       210       220  
pF1KB7 RRRLARSMNVTELAVQIWFENRRAKWRRHQRALMA-RNMLPFMAVGQPVMVTAAEAITAP
       :..::: .:..:  ::.::.:::::.::..::..: :.   . . .: .   : :  .::
XP_016 REELARRVNLSEARVQVWFQNRRAKFRRNERAMLASRSASLLKSYSQEA---AIEQPVAP
            80        90       100       110       120          130

            230        240       250       260       270       280 
pF1KB7 LFISGMRDDYF-WDHSHSSSLCFPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVP
          ...  ::. :  :   :    .::. : :                            
XP_016 R-PTALSPDYLSWTASSPYST---VPPYSPGSSGPATPGVNMANSIASLRLKAKEFSLHH
               140       150          160       170       180      

              
pF1KB7 SFTFPNV
              
XP_016 SQVPTVN
        190   

>>NP_620689 (OMIM: 300004,300215,300382,300419,308350,30  (562 aa)
 initn: 272 init1: 219 opt: 261  Z-score: 197.8  bits: 45.5 E(85289): 0.00028
Smith-Waterman score: 275; 28.7% identity (49.1% similar) in 275 aa overlap (20-286:225-479)

                          10        20        30        40         
pF1KB7            MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPE
                                     :::.:: . .    .  ::. :..:.   :
NP_620 PGGVTHPEERLGVAGGPGSAPAAGGGTGTEDDEEELLE-DEEDEDEEEELLEDDEEELLE
          200       210       220       230        240       250   

      50        60         70        80           90       100     
pF1KB7 PEQGTAAGEKLKS-AGAQGGEEKDGGGEEKDGGGAGVPGH---LWEGDLEGTSGSDGNVE
        .  .   :  .  ..: :.    ...     ::   : .   :   : :: .: : .: 
NP_620 DDARALLKEPRRCPVAATGAVAAAAAAAVATEGGELSPKEELLLHPEDAEGKDGED-SVC
           260       270       280       290       300        310  

         110       120       130       140       150       160     
pF1KB7 DSDQSEKEPGQQYSRPQGAVGGLEPGNAQQPNVHAFTPLQLQELERIFQREQFPSEFLRR
        :  :..: :    .             :.    .::  ::.:::: ::. ..:. : :.
NP_620 LSAGSDSEEGLLKRK-------------QRRYRTTFTSYQLEELERAFQKTHYPDVFTRE
            320                    330       340       350         

         170       180       190       200       210          220  
pF1KB7 RLARSMNVTELAVQIWFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAI---TAP
       .::  ...::  ::.::.:::::::....:  :..  : .    :. .:   .    ..:
NP_620 ELAMRLDLTEARVQVWFQNRRAKWRKREKA-GAQTHPPGLPFPGPLSATHPLSPYLDASP
     360       370       380        390       400       410        

            230       240        250       260       270       280 
pF1KB7 LFISGMRDDYFWDHSHSSSLC-FPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVP
       .       :  :  . ...   ::  : :: :  ::    :   : : . :        :
NP_620 FPPHHPALDSAWTAAAAAAAAAFPSLPPPPGSASLP----PSGAPLGLSTFLGAAVFRHP
      420       430       440       450           460       470    

                                                                   
pF1KB7 SFTFPNV                                                     
       .:  :                                                       
NP_620 AFISPAFGRLFSTMAPLTSASTAAALLRQPTPAVEGAVASGALADPATAAADRRASSIAA
          480       490       500       510       520       530    

>>NP_008833 (OMIM: 167420,202650) paired mesoderm homeob  (217 aa)
 initn: 309 init1: 230 opt: 248  Z-score: 193.3  bits: 43.3 E(85289): 0.0005
Smith-Waterman score: 259; 36.2% identity (59.1% similar) in 149 aa overlap (97-242:71-204)

         70        80        90       100       110       120      
pF1KB7 GGEEKDGGGEEKDGGGAGVPGHLWEGDLEGTSGSDGNVEDSDQSEKEPGQQYSRPQGAVG
                                     :::::   .:.:: ..:  .. .       
NP_008 DLEEAGDMVAAQADENVGEAGRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRK-------
               50        60        70        80        90          

        130       140       150       160       170       180      
pF1KB7 GLEPGNAQQPNVHAFTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRR
              :. :  .:.  ::: :::.:.: ..:. :.:. ::: .:.::  ::.::.:::
NP_008 -------QRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRR
                  100       110       120       130       140      

        190       200       210       220       230          240   
pF1KB7 AKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHS---HSSSLC
       ::.::..::..: .   ..  .    :::.:   .:       :   :  .   .:::: 
NP_008 AKFRRNERAMLANKNASLLK-SYSGDVTAVEQPIVPRPAPRPTDYLSWGTASPYRSSSLP
        150       160        170       180       190       200     

           250       260       270       280        
pF1KB7 FPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFPNV
                                                    
NP_008 RCCLHEGLHNGF                                 
         210                                        




288 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:51:14 2016 done: Fri Nov  4 08:51:15 2016
 Total Scan time:  8.940 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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